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The map label for this gene is visC [H]

Identifier: 115350484

GI number: 115350484

Start: 481330

End: 482508

Strand: Direct

Name: visC [H]

Synonym: Bamb_0430

Alternate gene names: 115350484

Gene position: 481330-482508 (Clockwise)

Preceding gene: 115350482

Following gene: 115350485

Centisome position: 13.53

GC content: 70.57

Gene sequence:

>1179_bases
ATGCCCGCCATGACTGCCCACCACACCTTCGACGTCGCCGTGGTCGGCGGCGGGCTCGTCGGCAAGACGGCCGCGCTCGC
GCTGACCCAGTCCGGCTACAAGACCGCCTTGCTCGCCCAGCCGGCGGCGCCGCGCCCCGCCGATCTCGCGTTCGACACGC
GCATCTACGCGCTGTCGTCCAGCTCGCAGGCATTGCTGGAGCGGCTGCGGGTCTGGCAGGCGCTCGACCATGGCCGGCTC
GCGCCGGTCTACGACATGCGGGTGTACGGCGACGCGCATGCGGAACTGCATTTCTCCGCCTACCAGGCGTCCGTTCCGCA
ACTCGCCTGGATCGCCGAATCGTCGCTGATCGAGACGTCGCTCGACGCCGCGCTGCGGTTCCAGCCGAACCTCACGTGGT
TCGATGCGCGCGCGCAAGGCTTCGACGTGCGCGACGATGCAGCCGTGCTCACGCTGTCGTCGGGGCAAGTGCTCGAAGCG
GACCTCGTGGTCGGCGCGGACGGCGCGCATTCCTGGGTGCGTTCCCAGATGGGGGCGAGGATCGAGCGGCGCGATTACCG
TCAGACGGGCGTCGTCGCGAACTTCAAGGCATCGCTTCCGCACCGCGAGACCGCCACCCAATGGTTCCGCGACGGCGAGA
TCATCGCGCTGCTGCCGCTGCCGGATGGTCACGTGTCGCTCGTGTGGTCCGCGCACACCGCGCACGCGGACGAACTGCTC
GCGCTCGATCCCGCGCAACTCGCGGCCGAAGTCGAGCGCGTATCGCACGGGCAGCTCGGCACGCTCGAATGCGTGACGCC
GGCCGCCGGTTTCCCGCTCGCGCTGCAGACCGTCGACAAGCTGATCGCCCCGCGCGTCGCGCTCGTCGGCGATGCCGCAC
ACCTGATCCACCCGCTCGCGGGGCAGGGGATGAATCTCGGCTTGCGCGACGTCGCGGCGCTCGCCGATGCGATCGCGAAC
AAGGAATCCTTCCGCAACCTCGGCGACACGGTGCTGCTGCGCCGCTACGAGCGTTCGCGCCGCGAGGACATCCGCGCGCT
GATGGTCGCGACCGACGGGCTGCAGCGGCTGTTCGCGGTGCCCGGCTCGTTCGCGAAGGCGGTGCGCAACGCGGGCATGG
CGTTCGTCGGCGCGCAGCCGCTCGTGAAGCGCTGGCTCGTATCGGCCGCGCTCGGCTGA

Upstream 100 bases:

>100_bases
AACGCCCGATGCGACGGGCCGCCGCGCCGCCGGGCCGGCCCGCGATTCTGCTGATTTCCCGCAAAGTCCGGCCGCGTAAG
GGATTGGCCCCGCGGCTATA

Downstream 100 bases:

>100_bases
TCGAACCTTCGCGCGCCCGGCCTGTCGGACAGGGCTCCGTTACGGCGTACACTGTGACGTGCACTCCGATTGAGCTGAAG
GAACAACAGGATGAAAAAAA

Product: ubiquinone biosynthesis hydroxylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MPAMTAHHTFDVAVVGGGLVGKTAALALTQSGYKTALLAQPAAPRPADLAFDTRIYALSSSSQALLERLRVWQALDHGRL
APVYDMRVYGDAHAELHFSAYQASVPQLAWIAESSLIETSLDAALRFQPNLTWFDARAQGFDVRDDAAVLTLSSGQVLEA
DLVVGADGAHSWVRSQMGARIERRDYRQTGVVANFKASLPHRETATQWFRDGEIIALLPLPDGHVSLVWSAHTAHADELL
ALDPAQLAAEVERVSHGQLGTLECVTPAAGFPLALQTVDKLIAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADAIAN
KESFRNLGDTVLLRRYERSRREDIRALMVATDGLQRLFAVPGSFAKAVRNAGMAFVGAQPLVKRWLVSAALG

Sequences:

>Translated_392_residues
MPAMTAHHTFDVAVVGGGLVGKTAALALTQSGYKTALLAQPAAPRPADLAFDTRIYALSSSSQALLERLRVWQALDHGRL
APVYDMRVYGDAHAELHFSAYQASVPQLAWIAESSLIETSLDAALRFQPNLTWFDARAQGFDVRDDAAVLTLSSGQVLEA
DLVVGADGAHSWVRSQMGARIERRDYRQTGVVANFKASLPHRETATQWFRDGEIIALLPLPDGHVSLVWSAHTAHADELL
ALDPAQLAAEVERVSHGQLGTLECVTPAAGFPLALQTVDKLIAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADAIAN
KESFRNLGDTVLLRRYERSRREDIRALMVATDGLQRLFAVPGSFAKAVRNAGMAFVGAQPLVKRWLVSAALG
>Mature_391_residues
PAMTAHHTFDVAVVGGGLVGKTAALALTQSGYKTALLAQPAAPRPADLAFDTRIYALSSSSQALLERLRVWQALDHGRLA
PVYDMRVYGDAHAELHFSAYQASVPQLAWIAESSLIETSLDAALRFQPNLTWFDARAQGFDVRDDAAVLTLSSGQVLEAD
LVVGADGAHSWVRSQMGARIERRDYRQTGVVANFKASLPHRETATQWFRDGEIIALLPLPDGHVSLVWSAHTAHADELLA
LDPAQLAAEVERVSHGQLGTLECVTPAAGFPLALQTVDKLIAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADAIANK
ESFRNLGDTVLLRRYERSRREDIRALMVATDGLQRLFAVPGSFAKAVRNAGMAFVGAQPLVKRWLVSAALG

Specific function: Not yet known [H]

COG id: COG0654

COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiH/COQ6 family [H]

Homologues:

Organism=Homo sapiens, GI32967305, Length=385, Percent_Identity=28.5714285714286, Blast_Score=122, Evalue=6e-28,
Organism=Homo sapiens, GI32967307, Length=276, Percent_Identity=32.6086956521739, Blast_Score=116, Evalue=3e-26,
Organism=Escherichia coli, GI1789273, Length=390, Percent_Identity=32.8205128205128, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1786883, Length=398, Percent_Identity=34.6733668341709, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1789274, Length=370, Percent_Identity=32.1621621621622, Blast_Score=156, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI25146631, Length=441, Percent_Identity=28.5714285714286, Blast_Score=135, Evalue=3e-32,
Organism=Saccharomyces cerevisiae, GI6321694, Length=462, Percent_Identity=25.7575757575758, Blast_Score=89, Evalue=1e-18,
Organism=Drosophila melanogaster, GI19920760, Length=443, Percent_Identity=29.1196388261851, Blast_Score=138, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002938
- InterPro:   IPR003042
- InterPro:   IPR018168
- InterPro:   IPR010971 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 42164; Mature: 42032

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS01304 UBIH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAMTAHHTFDVAVVGGGLVGKTAALALTQSGYKTALLAQPAAPRPADLAFDTRIYALSS
CCCCCCCCEEEEEEECCCCHHHHHHEEEECCCCCEEEEECCCCCCCCCCEECCEEEEECC
SSQALLERLRVWQALDHGRLAPVYDMRVYGDAHAELHFSAYQASVPQLAWIAESSLIETS
CHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEHHHHCCCCCEEHHHHHHHHHHH
LDAALRFQPNLTWFDARAQGFDVRDDAAVLTLSSGQVLEADLVVGADGAHSWVRSQMGAR
HHHHEEECCCCEEEECCCCCCCCCCCCEEEEECCCCEEEEEEEEECCCHHHHHHHHHCCH
IERRDYRQTGVVANFKASLPHRETATQWFRDGEIIALLPLPDGHVSLVWSAHTAHADELL
HHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCCCCCEE
ALDPAQLAAEVERVSHGQLGTLECVTPAAGFPLALQTVDKLIAPRVALVGDAAHLIHPLA
EECHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCHHEECCHHHHHHHHC
GQGMNLGLRDVAALADAIANKESFRNLGDTVLLRRYERSRREDIRALMVATDGLQRLFAV
CCCCCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGSFAKAVRNAGMAFVGAQPLVKRWLVSAALG
CCHHHHHHHHCCEEEECCHHHHHHHHHHHHCC
>Mature Secondary Structure 
PAMTAHHTFDVAVVGGGLVGKTAALALTQSGYKTALLAQPAAPRPADLAFDTRIYALSS
CCCCCCCEEEEEEECCCCHHHHHHEEEECCCCCEEEEECCCCCCCCCCEECCEEEEECC
SSQALLERLRVWQALDHGRLAPVYDMRVYGDAHAELHFSAYQASVPQLAWIAESSLIETS
CHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEHHHHCCCCCEEHHHHHHHHHHH
LDAALRFQPNLTWFDARAQGFDVRDDAAVLTLSSGQVLEADLVVGADGAHSWVRSQMGAR
HHHHEEECCCCEEEECCCCCCCCCCCCEEEEECCCCEEEEEEEEECCCHHHHHHHHHCCH
IERRDYRQTGVVANFKASLPHRETATQWFRDGEIIALLPLPDGHVSLVWSAHTAHADELL
HHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCCCCCEE
ALDPAQLAAEVERVSHGQLGTLECVTPAAGFPLALQTVDKLIAPRVALVGDAAHLIHPLA
EECHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCHHEECCHHHHHHHHC
GQGMNLGLRDVAALADAIANKESFRNLGDTVLLRRYERSRREDIRALMVATDGLQRLFAV
CCCCCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGSFAKAVRNAGMAFVGAQPLVKRWLVSAALG
CCHHHHHHHHCCEEEECCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on paired donors, with incorporation or reduction of molecular oxygen; With NADH2 or NADPH2 as one donor, and incorporation of one atom of oxygen [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1339425; 9278503 [H]