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The map label for this gene is yrbD [C]

Identifier: 115350389

GI number: 115350389

Start: 380325

End: 380888

Strand: Direct

Name: yrbD [C]

Synonym: Bamb_0334

Alternate gene names: 115350389

Gene position: 380325-380888 (Clockwise)

Preceding gene: 115350388

Following gene: 115350390

Centisome position: 10.69

GC content: 65.96

Gene sequence:

>564_bases
ATGAAAAAGACTGCTCTCGACTTCTGGGTCGGCCTGTTCGTGGTGGTGGGCTTCCTTGCGGTGCTGTTCCTGGCGCTCAA
GGTCGGCAACATGAGCTCGCTGTCCTTTCAGCCGACCTACTCGGTGCGGATGAAATTCGACAACATCGGCGGGCTGAAGC
CGCGCGCGGCCGTGAAGAGCGCCGGCGTCGTGGTCGGCCGCGTGAAGGCGATCGGCTTCGACAGCAATACGTATCAGGCG
CTCGTGACGATCGACGTCGACGGCCAATACCCGTTCCCGAAGGATTCGTCGGCGAAGATCCTGACGTCCGGCCTGCTCGG
CGAGCAGTACATCGGCCTCGATCCGGGCGGTGACACCGAAATGCTGAAGTCGGGCGATACGATCACGATGACGCAGTCGG
CGATCGTGCTCGAGAATCTGATCGGCCAGTTCCTGTACAGCAAGGCGGCCGACGCGGGCGGCGCGAAGCCGGCATCCGGC
GCACCGGCAGCACCGGCAGCACCGGCCGCGCCCGCACCGGTCGCGGTGCCGGCGTCCGCGGTGGCCGGCTCGGCCGCCCA
ATAA

Upstream 100 bases:

>100_bases
GACGGTCGTGTTCGCGTCGCTCGCCGTACTCGGCCTCGATTTCCTGCTGACCGCGCTGATGTTCAGCTAAGCCTCAGCCA
AGCCAAATTTTGGGATGACG

Downstream 100 bases:

>100_bases
CCACACGAGAGAAAGACAAGAGGGAATGACCATGCAGACGATCCGCATCAGGCACGCCGCGCTCGCAGTGGCGGCAGTCG
CCGCGTTGAGCGGTTGCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MKKTALDFWVGLFVVVGFLAVLFLALKVGNMSSLSFQPTYSVRMKFDNIGGLKPRAAVKSAGVVVGRVKAIGFDSNTYQA
LVTIDVDGQYPFPKDSSAKILTSGLLGEQYIGLDPGGDTEMLKSGDTITMTQSAIVLENLIGQFLYSKAADAGGAKPASG
APAAPAAPAAPAPVAVPASAVAGSAAQ

Sequences:

>Translated_187_residues
MKKTALDFWVGLFVVVGFLAVLFLALKVGNMSSLSFQPTYSVRMKFDNIGGLKPRAAVKSAGVVVGRVKAIGFDSNTYQA
LVTIDVDGQYPFPKDSSAKILTSGLLGEQYIGLDPGGDTEMLKSGDTITMTQSAIVLENLIGQFLYSKAADAGGAKPASG
APAAPAAPAAPAPVAVPASAVAGSAAQ
>Mature_187_residues
MKKTALDFWVGLFVVVGFLAVLFLALKVGNMSSLSFQPTYSVRMKFDNIGGLKPRAAVKSAGVVVGRVKAIGFDSNTYQA
LVTIDVDGQYPFPKDSSAKILTSGLLGEQYIGLDPGGDTEMLKSGDTITMTQSAIVLENLIGQFLYSKAADAGGAKPASG
APAAPAAPAAPAPVAVPASAVAGSAAQ

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=181, Percent_Identity=46.9613259668508, Blast_Score=138, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 19096; Mature: 19096

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTALDFWVGLFVVVGFLAVLFLALKVGNMSSLSFQPTYSVRMKFDNIGGLKPRAAVKS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEEECCCCCCCCHHHHHH
AGVVVGRVKAIGFDSNTYQALVTIDVDGQYPFPKDSSAKILTSGLLGEQYIGLDPGGDTE
CCEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCHHHHHCCCCCCEECCCCCCCHH
MLKSGDTITMTQSAIVLENLIGQFLYSKAADAGGAKPASGAPAAPAAPAAPAPVAVPASA
HHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
VAGSAAQ
HCCCCCC
>Mature Secondary Structure
MKKTALDFWVGLFVVVGFLAVLFLALKVGNMSSLSFQPTYSVRMKFDNIGGLKPRAAVKS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEEECCCCCCCCHHHHHH
AGVVVGRVKAIGFDSNTYQALVTIDVDGQYPFPKDSSAKILTSGLLGEQYIGLDPGGDTE
CCEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCHHHHHCCCCCCEECCCCCCCHH
MLKSGDTITMTQSAIVLENLIGQFLYSKAADAGGAKPASGAPAAPAAPAAPAPVAVPASA
HHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
VAGSAAQ
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]