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The map label for this gene is ugpB [H]

Identifier: 115350369

GI number: 115350369

Start: 354980

End: 356314

Strand: Direct

Name: ugpB [H]

Synonym: Bamb_0314

Alternate gene names: 115350369

Gene position: 354980-356314 (Clockwise)

Preceding gene: 115350368

Following gene: 115350370

Centisome position: 9.98

GC content: 65.39

Gene sequence:

>1335_bases
ATGAAGAAGAAGCCTGCGGGGACCACGATTCGCTCGATCGCGCTTGGCGGCGCGCTGATGTTCGGTGTGCAGCATGCGGC
GTTCGCCGCGACGGAGATCCAGTTCTGGCATGCGATGGAGTCGGCGCTCGGCGAGCGCGTAAACGAGCTCGCCACGCAGT
TCAACGCATCGCAGAGCGACTACAAGATCGTGCCGGTCTTCAAGGGCACCTACGACCAGGCGCTCGCGGCAGGCATCGCC
GCCTATCGCAGCGGCAACGCGCCGGCGATCCTCCAGGTCTATGAAGTCGGCACCGCGACGATGATGAAGGCGAAGAAGGC
CGTCGTGCCCGTCTACGACGTGTTCAAGCAGGCCGGCGTGCCGCTCGACGAAAAGGCGTTCGTGCCGACCATCGCGAGCT
ACTACAGCGATGCGAAGACGGGCCATCTCGTGTCGATGCCGTTCAACAGCTCGACGCCGGTGCTGTACTACAACAAGGAC
GCGTTCAAGAAGGCCGGGCTCGATCCGAACCAGCCGCCGAAGACGTGGGCGGACGTGCAGGCCGATGCGGAGAAACTGCG
CAAGTCGGGGATGACCTGCGGCTTCACGACCGGCTGGCAGGGCTGGATCCAGCTCGAGAACTACAGCGTGTGGCACGCGC
TGCCGTTCGCGAGCCGCAACAACGGCTTCGACGGCGCCGACGCGGTGCTCGAATTCAACAAGCCGCAGCAGATCGCCCAC
ATCGCGTTCCTGCAGCAGATGCAGAAGGACGGCACGTTCACGTACGCGGGCCGCAAGGACGAAGCGTCGGCGAAGTTCTA
CAGCGGCGACTGCGGGATCCTGACGACGTCGTCGGGTGCGCTCGCGAACGTGCAGAAATTCGCGAAGTTCAGCTACGGCA
CGGGCATGATGCCGTACGACGCGAACGTGAAGGGCGCACCGCAGAACGCGATCATCGGCGGCGCGAGCCTGTGGGTGCTG
GCCGGCAAGGATCCGGCGACCTACAAGGGCGTCGCGAAATTCCTCGCGTTCCTCGCCTCGCCGCCGGTCGCCGCGAAGTG
GCACCAGGAAACGGGCTACCTGCCGGTCACGACGGCCGCGTACGACCTCACGCGCCAGCAGGGCTTCTATGCGAAGAACC
CGAGCGCGGAAACCGCGATCAAGCAGATGTTGAACAAACCGCCGCTGCCCTACACGAAGGGGCTGCGTCTGGGCAACATG
CCGCAGATCCGCACGGTCGTCGACGAAGAGCTGGAGCAGGTCTGGGCGCAGAAGAAGTCGCCGAAGGACGCGCTCGACTC
GGCCGCCTCGCGCGGCGACGAGCTGCTGCGCCGCTTCGAGAAGTCGGGCGGCTGA

Upstream 100 bases:

>100_bases
AACGACAACTGACTGTCACAAACGATCACTAGACTTCGCCGGTTCAATGGCGACGGGAATGTTGCACACGCTGTTGGTAA
CGTTTTCATAGGAGAGGTCG

Downstream 100 bases:

>100_bases
TCCCGCATCGCGTCCGTGCCGCCGGCCGCCGCCTCGCGCATGCGCGCGGGCCGGCGGCGCGGTTCCCTTTCCGTTTCGCC
TGACCGGATGCCCGCGATGC

Product: glycerol-3-phosphate transporter periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MKKKPAGTTIRSIALGGALMFGVQHAAFAATEIQFWHAMESALGERVNELATQFNASQSDYKIVPVFKGTYDQALAAGIA
AYRSGNAPAILQVYEVGTATMMKAKKAVVPVYDVFKQAGVPLDEKAFVPTIASYYSDAKTGHLVSMPFNSSTPVLYYNKD
AFKKAGLDPNQPPKTWADVQADAEKLRKSGMTCGFTTGWQGWIQLENYSVWHALPFASRNNGFDGADAVLEFNKPQQIAH
IAFLQQMQKDGTFTYAGRKDEASAKFYSGDCGILTTSSGALANVQKFAKFSYGTGMMPYDANVKGAPQNAIIGGASLWVL
AGKDPATYKGVAKFLAFLASPPVAAKWHQETGYLPVTTAAYDLTRQQGFYAKNPSAETAIKQMLNKPPLPYTKGLRLGNM
PQIRTVVDEELEQVWAQKKSPKDALDSAASRGDELLRRFEKSGG

Sequences:

>Translated_444_residues
MKKKPAGTTIRSIALGGALMFGVQHAAFAATEIQFWHAMESALGERVNELATQFNASQSDYKIVPVFKGTYDQALAAGIA
AYRSGNAPAILQVYEVGTATMMKAKKAVVPVYDVFKQAGVPLDEKAFVPTIASYYSDAKTGHLVSMPFNSSTPVLYYNKD
AFKKAGLDPNQPPKTWADVQADAEKLRKSGMTCGFTTGWQGWIQLENYSVWHALPFASRNNGFDGADAVLEFNKPQQIAH
IAFLQQMQKDGTFTYAGRKDEASAKFYSGDCGILTTSSGALANVQKFAKFSYGTGMMPYDANVKGAPQNAIIGGASLWVL
AGKDPATYKGVAKFLAFLASPPVAAKWHQETGYLPVTTAAYDLTRQQGFYAKNPSAETAIKQMLNKPPLPYTKGLRLGNM
PQIRTVVDEELEQVWAQKKSPKDALDSAASRGDELLRRFEKSGG
>Mature_444_residues
MKKKPAGTTIRSIALGGALMFGVQHAAFAATEIQFWHAMESALGERVNELATQFNASQSDYKIVPVFKGTYDQALAAGIA
AYRSGNAPAILQVYEVGTATMMKAKKAVVPVYDVFKQAGVPLDEKAFVPTIASYYSDAKTGHLVSMPFNSSTPVLYYNKD
AFKKAGLDPNQPPKTWADVQADAEKLRKSGMTCGFTTGWQGWIQLENYSVWHALPFASRNNGFDGADAVLEFNKPQQIAH
IAFLQQMQKDGTFTYAGRKDEASAKFYSGDCGILTTSSGALANVQKFAKFSYGTGMMPYDANVKGAPQNAIIGGASLWVL
AGKDPATYKGVAKFLAFLASPPVAAKWHQETGYLPVTTAAYDLTRQQGFYAKNPSAETAIKQMLNKPPLPYTKGLRLGNM
PQIRTVVDEELEQVWAQKKSPKDALDSAASRGDELLRRFEKSGG

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=416, Percent_Identity=70.9134615384615, Blast_Score=644, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48214; Mature: 48214

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKPAGTTIRSIALGGALMFGVQHAAFAATEIQFWHAMESALGERVNELATQFNASQSD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
YKIVPVFKGTYDQALAAGIAAYRSGNAPAILQVYEVGTATMMKAKKAVVPVYDVFKQAGV
EEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCHHHHHHHHCCC
PLDEKAFVPTIASYYSDAKTGHLVSMPFNSSTPVLYYNKDAFKKAGLDPNQPPKTWADVQ
CCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCHHHHHCCCCCCCCCCCHHHHH
ADAEKLRKSGMTCGFTTGWQGWIQLENYSVWHALPFASRNNGFDGADAVLEFNKPQQIAH
HHHHHHHHCCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCHHEEECCCCHHHHH
IAFLQQMQKDGTFTYAGRKDEASAKFYSGDCGILTTSSGALANVQKFAKFSYGTGMMPYD
HHHHHHHHHCCCEEECCCCCCCCCEEECCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCC
ANVKGAPQNAIIGGASLWVLAGKDPATYKGVAKFLAFLASPPVAAKWHQETGYLPVTTAA
CCCCCCCCCCEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEHHCCCCCEEEEHHH
YDLTRQQGFYAKNPSAETAIKQMLNKPPLPYTKGLRLGNMPQIRTVVDEELEQVWAQKKS
HHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
PKDALDSAASRGDELLRRFEKSGG
CHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKKPAGTTIRSIALGGALMFGVQHAAFAATEIQFWHAMESALGERVNELATQFNASQSD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
YKIVPVFKGTYDQALAAGIAAYRSGNAPAILQVYEVGTATMMKAKKAVVPVYDVFKQAGV
EEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCHHHHHHHHCCC
PLDEKAFVPTIASYYSDAKTGHLVSMPFNSSTPVLYYNKDAFKKAGLDPNQPPKTWADVQ
CCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCHHHHHCCCCCCCCCCCHHHHH
ADAEKLRKSGMTCGFTTGWQGWIQLENYSVWHALPFASRNNGFDGADAVLEFNKPQQIAH
HHHHHHHHCCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCHHEEECCCCHHHHH
IAFLQQMQKDGTFTYAGRKDEASAKFYSGDCGILTTSSGALANVQKFAKFSYGTGMMPYD
HHHHHHHHHCCCEEECCCCCCCCCEEECCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCC
ANVKGAPQNAIIGGASLWVLAGKDPATYKGVAKFLAFLASPPVAAKWHQETGYLPVTTAA
CCCCCCCCCCEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEHHCCCCCEEEEHHH
YDLTRQQGFYAKNPSAETAIKQMLNKPPLPYTKGLRLGNMPQIRTVVDEELEQVWAQKKS
HHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
PKDALDSAASRGDELLRRFEKSGG
CHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]