Click here to switch to the map view.

The map label for this gene is boxA

Identifier: 11500019

GI number: 11500019

Start: 625264

End: 627201

Strand: Reverse

Name: boxA

Synonym: AF0693m

Alternate gene names: 11500019

Gene position: 627201-625264 (Counterclockwise)

Preceding gene: 11498301

Following gene: 11498298

Centisome position: 28.79

GC content: 50.52

Gene sequence:

>1938_bases
ATGGAAATGTGGATACTGGACTGCGCGCCTTCGGGAAGGGGGATTGACCTCTGGATCAAGAAGGAGAACGGAAAAGTTGT
CAGGAGAAGTTTCAGGTTTGAAAATTACTTTTTTCTGCATTTTCCCGACAGAGCTCTCCACGTTGAGCTTTTAGAGGCTC
TGGAAACTCGCTACAAAGTTGAGGAGTGCACTTTCAAAACAATTTACGGTGAAATTGAAGGATACAGAATTTACGCCGGG
AGGAAGGTTGCGGAGATGATAGAGAGGCAGGCAAAGGATGCTAAGCTCTTCAACGTTGACGTTAGGCTGGAGCAGAAATT
CATGGCCAGAAAAAGGATTTTTCCGTGCTCTCACGTTCTCGAAGACGTTTCGGAAAGGTTTGAGGCTGACTTCGACCTGC
CGTTTGAAGTTCTAAGGGTGGGTGTTAAGGGAGATGTCTTCAAACCCGAGGTCGAGGAGATGAGCATAAACGGGAAGAGA
ATTGAGGGCAGCGAGAAAGAGCTGTTAGAGGAGCTTTCCGGTGCGATGGAGGACATGAATCCCGACATCGTTGTGATGGA
GGATGCGGATTTCTGGATGCAGCATCTCGGCTTGAAGGCGATGAGCAGAACCGGAAGATTTCGGAAGCTCTCTCAGAAGG
TTTACTGGAGCTACGGCAGGGCGAGATACAGAAAGCAGGCCCTGATACCGGAGGGAAGAGTTCTCATAGACTCGAACTCC
TTCAACTTCAGGGAGGGTGGGCTTAGGGGAGTTCTACTCGCCTCAAGGATATCCGCCATATCCCCAAACCACGCATCCCG
AATCACACCCGGCTCGCTCATCTCGCTTTACGAGGTCTTTGAGGCGCTGATGAGGGGCATTGCGGTGCCATTCAGAAAGA
GCGACGCTGAGAGGGTTAAGAGCATCGAGGAGCTGAGATTCTCGGACAGAGGCGGGATGATTTTCCAGCCCGAACCCGGA
ATTTACGAGAACGTCTGGCAGCTCGACTTCACGTCCATGTATCCGTCGATAATTGTGAAGCACAATCTCTCACCAGAGAG
CATCGGAAAGGAGGGGAGGGGATTCCTGGCGGAGGTGCTCGAGCCCCTTCTCAGGCTGAGGATAAAGACGAAGAGCCTTA
AGAGGAAGGATTCCCGCTATGCGGGAGTGGACTCAATTCTCAAGTGGATGCTCGTCACTTGCTTCGGCTACACCGGCTAC
AGAAACGCCAAGTTCGGCAGAATAGAGGTTCACGAGGAGATAAACAGAATCGGAAGAGAAATTCTTATAAAAACAAAGGA
AATTGCGGAGGAGCTAGGCTTTAAGGTTCTTCACGGGATAGTTGACTGCTTGTGGGTTAGGGGTGAAGACATCGGCAGCT
TCCAGGCGAGGGTTGAGGAGGAAACGGGCCTGCTGACCGAGGTGGAGAAGTTCGACTGGATAGTCTTTCTTCCGATGAAG
GACGGCAGTGGAGCGTACAACCGCTATTACGGCAGGCTGAGCAGCGGAGAGATGAAGCTCAGGGGGGTTATGGCTAGAAG
GCGTGACGTACCGGAGTACGTGAAAAGAATGCAGAGGGAGTGCTTTGATGTTATGAAAAGAGCAAGAAGCGCTGGCGAGC
TTCTCAGGCTTTTCCCCGAGCTGAGACGGATTTACGAGAGATATGCCGAGAACATAAGAAGGGCGAGGCCTGAGGAAATG
ATTATCAGAAAGGTTGTTGGAAAGGCGGAATACGGAAAAAAGCTGCTGGAATCTTCGGCAATCAGAGAGTACAGAAAGGC
AGGAATTGAAATCAAGCCAGGGATGGTTGTGGAATACGTGGTTGCTGACTCCAAGAGGAAGGTCGTCAGTGTGAGGAACC
ACTCGTATTTTGACGTCAGATACTACAGAAAACTGCTCGATAAAGCGTGGGAGGAGCTGAGCTGGTTTTTAAAGTCATCT
CATCAAGAATTTGATTAG

Upstream 100 bases:

>100_bases
GGCATGGTCAGGAAGCACAGCAGCGAGGCGTTTTACACCTTCGATGACCCACTGGAAGCGGCGATCTTCTCCGTGCTTGT
TGAGCTCCTGAAGGAGCTTG

Downstream 100 bases:

>100_bases
AATCGAGGCAAAAACAATGGTGCCGTAGGCAGTTCCTGCAAGAAGGAAAAGCATTGCAGCAGGAAAGGCCTTGAATGAGG
AGGTGATAAGGAAGGCAGTC

Product: DNA polymerase I

Products: NA

Alternate protein names: DNA polymerase B2; DNA polymerase II [H]

Number of amino acids: Translated: 645; Mature: 645

Protein sequence:

>645_residues
MEMWILDCAPSGRGIDLWIKKENGKVVRRSFRFENYFFLHFPDRALHVELLEALETRYKVEECTFKTIYGEIEGYRIYAG
RKVAEMIERQAKDAKLFNVDVRLEQKFMARKRIFPCSHVLEDVSERFEADFDLPFEVLRVGVKGDVFKPEVEEMSINGKR
IEGSEKELLEELSGAMEDMNPDIVVMEDADFWMQHLGLKAMSRTGRFRKLSQKVYWSYGRARYRKQALIPEGRVLIDSNS
FNFREGGLRGVLLASRISAISPNHASRITPGSLISLYEVFEALMRGIAVPFRKSDAERVKSIEELRFSDRGGMIFQPEPG
IYENVWQLDFTSMYPSIIVKHNLSPESIGKEGRGFLAEVLEPLLRLRIKTKSLKRKDSRYAGVDSILKWMLVTCFGYTGY
RNAKFGRIEVHEEINRIGREILIKTKEIAEELGFKVLHGIVDCLWVRGEDIGSFQARVEEETGLLTEVEKFDWIVFLPMK
DGSGAYNRYYGRLSSGEMKLRGVMARRRDVPEYVKRMQRECFDVMKRARSAGELLRLFPELRRIYERYAENIRRARPEEM
IIRKVVGKAEYGKKLLESSAIREYRKAGIEIKPGMVVEYVVADSKRKVVSVRNHSYFDVRYYRKLLDKAWEELSWFLKSS
HQEFD

Sequences:

>Translated_645_residues
MEMWILDCAPSGRGIDLWIKKENGKVVRRSFRFENYFFLHFPDRALHVELLEALETRYKVEECTFKTIYGEIEGYRIYAG
RKVAEMIERQAKDAKLFNVDVRLEQKFMARKRIFPCSHVLEDVSERFEADFDLPFEVLRVGVKGDVFKPEVEEMSINGKR
IEGSEKELLEELSGAMEDMNPDIVVMEDADFWMQHLGLKAMSRTGRFRKLSQKVYWSYGRARYRKQALIPEGRVLIDSNS
FNFREGGLRGVLLASRISAISPNHASRITPGSLISLYEVFEALMRGIAVPFRKSDAERVKSIEELRFSDRGGMIFQPEPG
IYENVWQLDFTSMYPSIIVKHNLSPESIGKEGRGFLAEVLEPLLRLRIKTKSLKRKDSRYAGVDSILKWMLVTCFGYTGY
RNAKFGRIEVHEEINRIGREILIKTKEIAEELGFKVLHGIVDCLWVRGEDIGSFQARVEEETGLLTEVEKFDWIVFLPMK
DGSGAYNRYYGRLSSGEMKLRGVMARRRDVPEYVKRMQRECFDVMKRARSAGELLRLFPELRRIYERYAENIRRARPEEM
IIRKVVGKAEYGKKLLESSAIREYRKAGIEIKPGMVVEYVVADSKRKVVSVRNHSYFDVRYYRKLLDKAWEELSWFLKSS
HQEFD
>Mature_645_residues
MEMWILDCAPSGRGIDLWIKKENGKVVRRSFRFENYFFLHFPDRALHVELLEALETRYKVEECTFKTIYGEIEGYRIYAG
RKVAEMIERQAKDAKLFNVDVRLEQKFMARKRIFPCSHVLEDVSERFEADFDLPFEVLRVGVKGDVFKPEVEEMSINGKR
IEGSEKELLEELSGAMEDMNPDIVVMEDADFWMQHLGLKAMSRTGRFRKLSQKVYWSYGRARYRKQALIPEGRVLIDSNS
FNFREGGLRGVLLASRISAISPNHASRITPGSLISLYEVFEALMRGIAVPFRKSDAERVKSIEELRFSDRGGMIFQPEPG
IYENVWQLDFTSMYPSIIVKHNLSPESIGKEGRGFLAEVLEPLLRLRIKTKSLKRKDSRYAGVDSILKWMLVTCFGYTGY
RNAKFGRIEVHEEINRIGREILIKTKEIAEELGFKVLHGIVDCLWVRGEDIGSFQARVEEETGLLTEVEKFDWIVFLPMK
DGSGAYNRYYGRLSSGEMKLRGVMARRRDVPEYVKRMQRECFDVMKRARSAGELLRLFPELRRIYERYAENIRRARPEEM
IIRKVVGKAEYGKKLLESSAIREYRKAGIEIKPGMVVEYVVADSKRKVVSVRNHSYFDVRYYRKLLDKAWEELSWFLKSS
HQEFD

Specific function: This polymerase is devoid of exonuclease activity [H]

COG id: COG0417

COG function: function code L; DNA polymerase elongation subunit (family B)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DNA polymerase type-B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006172
- InterPro:   IPR006134
- InterPro:   IPR023211 [H]

Pfam domain/function: PF00136 DNA_pol_B [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 75331; Mature: 75331

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMWILDCAPSGRGIDLWIKKENGKVVRRSFRFENYFFLHFPDRALHVELLEALETRYKV
CCEEEEECCCCCCCEEEEEECCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
EECTFKTIYGEIEGYRIYAGRKVAEMIERQAKDAKLFNVDVRLEQKFMARKRIFPCSHVL
HHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHCCCCHHHHH
EDVSERFEADFDLPFEVLRVGVKGDVFKPEVEEMSINGKRIEGSEKELLEELSGAMEDMN
HHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
PDIVVMEDADFWMQHLGLKAMSRTGRFRKLSQKVYWSYGRARYRKQALIPEGRVLIDSNS
CCEEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
FNFREGGLRGVLLASRISAISPNHASRITPGSLISLYEVFEALMRGIAVPFRKSDAERVK
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
SIEELRFSDRGGMIFQPEPGIYENVWQLDFTSMYPSIIVKHNLSPESIGKEGRGFLAEVL
HHHHHHHCCCCCEEECCCCCHHHHHHHCCHHHHCCHHEEECCCCHHHCCCCCCHHHHHHH
EPLLRLRIKTKSLKRKDSRYAGVDSILKWMLVTCFGYTGYRNAKFGRIEVHEEINRIGRE
HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHH
ILIKTKEIAEELGFKVLHGIVDCLWVRGEDIGSFQARVEEETGLLTEVEKFDWIVFLPMK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHCCEEEEEEEC
DGSGAYNRYYGRLSSGEMKLRGVMARRRDVPEYVKRMQRECFDVMKRARSAGELLRLFPE
CCCCCHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRRIYERYAENIRRARPEEMIIRKVVGKAEYGKKLLESSAIREYRKAGIEIKPGMVVEYV
HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEE
VADSKRKVVSVRNHSYFDVRYYRKLLDKAWEELSWFLKSSHQEFD
ECCCCCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEMWILDCAPSGRGIDLWIKKENGKVVRRSFRFENYFFLHFPDRALHVELLEALETRYKV
CCEEEEECCCCCCCEEEEEECCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
EECTFKTIYGEIEGYRIYAGRKVAEMIERQAKDAKLFNVDVRLEQKFMARKRIFPCSHVL
HHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHCCCCHHHHH
EDVSERFEADFDLPFEVLRVGVKGDVFKPEVEEMSINGKRIEGSEKELLEELSGAMEDMN
HHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
PDIVVMEDADFWMQHLGLKAMSRTGRFRKLSQKVYWSYGRARYRKQALIPEGRVLIDSNS
CCEEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
FNFREGGLRGVLLASRISAISPNHASRITPGSLISLYEVFEALMRGIAVPFRKSDAERVK
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
SIEELRFSDRGGMIFQPEPGIYENVWQLDFTSMYPSIIVKHNLSPESIGKEGRGFLAEVL
HHHHHHHCCCCCEEECCCCCHHHHHHHCCHHHHCCHHEEECCCCHHHCCCCCCHHHHHHH
EPLLRLRIKTKSLKRKDSRYAGVDSILKWMLVTCFGYTGYRNAKFGRIEVHEEINRIGRE
HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHH
ILIKTKEIAEELGFKVLHGIVDCLWVRGEDIGSFQARVEEETGLLTEVEKFDWIVFLPMK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHCCEEEEEEEC
DGSGAYNRYYGRLSSGEMKLRGVMARRRDVPEYVKRMQRECFDVMKRARSAGELLRLFPE
CCCCCHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRRIYERYAENIRRARPEEMIIRKVVGKAEYGKKLLESSAIREYRKAGIEIKPGMVVEYV
HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEE
VADSKRKVVSVRNHSYFDVRYYRKLLDKAWEELSWFLKSSHQEFD
ECCCCCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8332474; 11427726 [H]