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The map label for this gene is rpl10e

Identifier: 11498937

GI number: 11498937

Start: 1197169

End: 1197693

Strand: Reverse

Name: rpl10e

Synonym: AF1339

Alternate gene names: 11498937

Gene position: 1197693-1197169 (Counterclockwise)

Preceding gene: 11498938

Following gene: 11498936

Centisome position: 54.98

GC content: 52.76

Gene sequence:

>525_bases
ATGGCAAGAAAACCAGCGAGAATGTGGCGAAGGCTTGAAAGGCCATACACAAGAACCGAGTACATCGATGGTGCTCCGGG
AACAAGAGTCAGAATGTTCGACATGGGTAACAAGAGCGCTGACTTCCCGGTTATGCTCACACTCGTTGCCAAGGAGGCAG
TGCAAATCAGGGAGAATGCACTGGAAGCTGCGAGAGTCGTTGCCAACAAGTACGTTTCGAGGAGGGCAGGAGCGAGCAAC
TACAAGCTCAAGCTCCGAATCTTCCCGCACCACATCCTGAGGGAGCACAAGATGGCTGTGGGTGCTGGAGCGGACAGAAT
TTCACAGGGTATGAGGGCAGCTTTTGGCAAGCCAGTAGGCAGGGCTGCAAGAGTAAAGCCGGGAACGAAGATTATGAGCG
TGTGGGTTAAGCCAGAGCACTTCGAGATTGCAAAGGAAGCTTTGAGAAGGGCGGCAATGAAGATGCCCACTCCCACGAAA
ATTGTGGTTGAGAAGGGTCACGAACTGCTGAAGGGCAAGATTTGA

Upstream 100 bases:

>100_bases
AGGCCAAGAGCGGAGTATGTGGGGGAGAAGGAGAAGAAGTTCATCCCTCTGTCGAAAAGGTGACGAAACCTTTATTTGAC
ATGCTGAGGTGGTGGGGAAC

Downstream 100 bases:

>100_bases
GTAAAGTTTTTTTGATTCAAATCAACTTTTTCTGATGCCTTCATTGATGGTAGGTGGAACCACCAGCAGCGCAGGCAAGA
GTTTGCTCGCTGCTGCTTTT

Product: 50S ribosomal protein L10e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MARKPARMWRRLERPYTRTEYIDGAPGTRVRMFDMGNKSADFPVMLTLVAKEAVQIRENALEAARVVANKYVSRRAGASN
YKLKLRIFPHHILREHKMAVGAGADRISQGMRAAFGKPVGRAARVKPGTKIMSVWVKPEHFEIAKEALRRAAMKMPTPTK
IVVEKGHELLKGKI

Sequences:

>Translated_174_residues
MARKPARMWRRLERPYTRTEYIDGAPGTRVRMFDMGNKSADFPVMLTLVAKEAVQIRENALEAARVVANKYVSRRAGASN
YKLKLRIFPHHILREHKMAVGAGADRISQGMRAAFGKPVGRAARVKPGTKIMSVWVKPEHFEIAKEALRRAAMKMPTPTK
IVVEKGHELLKGKI
>Mature_173_residues
ARKPARMWRRLERPYTRTEYIDGAPGTRVRMFDMGNKSADFPVMLTLVAKEAVQIRENALEAARVVANKYVSRRAGASNY
KLKLRIFPHHILREHKMAVGAGADRISQGMRAAFGKPVGRAARVKPGTKIMSVWVKPEHFEIAKEALRRAAMKMPTPTKI
VVEKGHELLKGKI

Specific function: Unknown

COG id: COG0197

COG function: function code J; Ribosomal protein L16/L10E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10e family

Homologues:

Organism=Homo sapiens, GI223890243, Length=169, Percent_Identity=42.603550295858, Blast_Score=139, Evalue=1e-33,
Organism=Homo sapiens, GI18152783, Length=169, Percent_Identity=42.603550295858, Blast_Score=137, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI17533037, Length=169, Percent_Identity=39.6449704142012, Blast_Score=129, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6323104, Length=169, Percent_Identity=43.7869822485207, Blast_Score=142, Evalue=3e-35,
Organism=Drosophila melanogaster, GI221513696, Length=169, Percent_Identity=42.603550295858, Blast_Score=140, Evalue=5e-34,
Organism=Drosophila melanogaster, GI221513692, Length=169, Percent_Identity=42.603550295858, Blast_Score=140, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL10_ARCFU (O28930)

Other databases:

- EMBL:   AE000782
- PIR:   B69417
- RefSeq:   NP_070168.1
- ProteinModelPortal:   O28930
- SMR:   O28930
- GeneID:   1484565
- GenomeReviews:   AE000782_GR
- KEGG:   afu:AF1339
- NMPDR:   fig|224325.1.peg.1329
- TIGR:   AF_1339
- HOGENOM:   HBG512729
- OMA:   YTRREYI
- ProtClustDB:   PRK04199
- BioCyc:   AFUL224325:AF_1339-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00448
- InterPro:   IPR001197
- InterPro:   IPR016180
- InterPro:   IPR022981
- InterPro:   IPR018255
- PANTHER:   PTHR11726
- PIRSF:   PIRSF005590
- TIGRFAMs:   TIGR00279

Pfam domain/function: PF00252 Ribosomal_L16; SSF54686 Ribosomal_L10e/L16

EC number: NA

Molecular weight: Translated: 19645; Mature: 19513

Theoretical pI: Translated: 11.62; Mature: 11.62

Prosite motif: PS01257 RIBOSOMAL_L10E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKPARMWRRLERPYTRTEYIDGAPGTRVRMFDMGNKSADFPVMLTLVAKEAVQIRENA
CCCCHHHHHHHHHCCCCHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
LEAARVVANKYVSRRAGASNYKLKLRIFPHHILREHKMAVGAGADRISQGMRAAFGKPVG
HHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
RAARVKPGTKIMSVWVKPEHFEIAKEALRRAAMKMPTPTKIVVEKGHELLKGKI
CCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHCCCC
>Mature Secondary Structure 
ARKPARMWRRLERPYTRTEYIDGAPGTRVRMFDMGNKSADFPVMLTLVAKEAVQIRENA
CCCHHHHHHHHHCCCCHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
LEAARVVANKYVSRRAGASNYKLKLRIFPHHILREHKMAVGAGADRISQGMRAAFGKPVG
HHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
RAARVKPGTKIMSVWVKPEHFEIAKEALRRAAMKMPTPTKIVVEKGHELLKGKI
CCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475