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Identifier: 11498349

GI number: 11498349

Start: 662506

End: 662922

Strand: Reverse

Name: Not Available

Synonym: AF0743

Alternate gene names: 11498349

Gene position: 662922-662506 (Counterclockwise)

Preceding gene: 11498350

Following gene: 11498346

Centisome position: 30.43

GC content: 45.56

Gene sequence:

>417_bases
ATGGAAGAGGGCATTACGAGAATCGGTGTGAGCCTGCCGAAAAATCTCTTAGACGAGTTTGATAGGATAATATCCACCAG
AGGTTACTCCTCAAGAAGTGAAGCCATCAGAGATGCAATAAGGACGTATATAACCGAGTACAGGTGGCTTGAGAGCGAAA
AAGGGGAGATTGTGGGCGTTCTTGTGGTGCTCTACGACCATCACGTAAAGGGCGTTAGCGATTTACTGATCGACTTGCAG
CACGATTTTCATGAAATAATCACCTCAAGCACGCACATACACCTCAACGAGGACCAGTGTCTTGAGATGATACTGGTTAA
GGGCAAAATGGAGAGAATAAAAGTGCTCGTTGACAAAATCTCAGCCGCAAGAGGCGTTATGAACGTCAAACTGATCTCTG
CGGTTAAGAAGGTTTAG

Upstream 100 bases:

>100_bases
ACTTGCATGGAATCTTTGATTTAATTTTGTATTGAAAATTTTAAAACTCGGATTTGCCGCAAACGAATACTTTTTTATAA
ATTTCCGAACGAAGTTATGC

Downstream 100 bases:

>100_bases
GAATCGTAGCTTGCATCCCCTCTGCAAATCAGAAACACCGCTGCGTACTCGGGCAGTTTAACTCTTCCCGGGTAAATCTT
CCCGCTGAAGTCCCCGATGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MEEGITRIGVSLPKNLLDEFDRIISTRGYSSRSEAIRDAIRTYITEYRWLESEKGEIVGVLVVLYDHHVKGVSDLLIDLQ
HDFHEIITSSTHIHLNEDQCLEMILVKGKMERIKVLVDKISAARGVMNVKLISAVKKV

Sequences:

>Translated_138_residues
MEEGITRIGVSLPKNLLDEFDRIISTRGYSSRSEAIRDAIRTYITEYRWLESEKGEIVGVLVVLYDHHVKGVSDLLIDLQ
HDFHEIITSSTHIHLNEDQCLEMILVKGKMERIKVLVDKISAARGVMNVKLISAVKKV
>Mature_138_residues
MEEGITRIGVSLPKNLLDEFDRIISTRGYSSRSEAIRDAIRTYITEYRWLESEKGEIVGVLVVLYDHHVKGVSDLLIDLQ
HDFHEIITSSTHIHLNEDQCLEMILVKGKMERIKVLVDKISAARGVMNVKLISAVKKV

Specific function: Transcriptional regulator (Potential)

COG id: COG0864

COG function: function code K; Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transcriptional regulatory CopG/NikR family

Homologues:

Organism=Escherichia coli, GI1789892, Length=105, Percent_Identity=32.3809523809524, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NIKR_ARCFU (O29515)

Other databases:

- EMBL:   AE000782
- PIR:   G69342
- RefSeq:   NP_069577.1
- ProteinModelPortal:   O29515
- SMR:   O29515
- GeneID:   1483960
- GenomeReviews:   AE000782_GR
- KEGG:   afu:AF0743
- NMPDR:   fig|224325.1.peg.736
- TIGR:   AF_0743
- HOGENOM:   HBG646378
- OMA:   DEHNCLE
- ProtClustDB:   CLSK2746574
- BioCyc:   AFUL224325:AF_0743-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_00476
- InterPro:   IPR013321
- InterPro:   IPR002145
- InterPro:   IPR022988
- InterPro:   IPR010985
- InterPro:   IPR014864
- Gene3D:   G3DSA:1.10.1220.10
- Gene3D:   G3DSA:3.30.70.1150

Pfam domain/function: PF08753 NikR_C; PF01402 RHH_1; SSF47598 Met_repress_like

EC number: NA

Molecular weight: Translated: 15730; Mature: 15730

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEGITRIGVSLPKNLLDEFDRIISTRGYSSRSEAIRDAIRTYITEYRWLESEKGEIVGV
CCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LVVLYDHHVKGVSDLLIDLQHDFHEIITSSTHIHLNEDQCLEMILVKGKMERIKVLVDKI
HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
SAARGVMNVKLISAVKKV
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEEGITRIGVSLPKNLLDEFDRIISTRGYSSRSEAIRDAIRTYITEYRWLESEKGEIVGV
CCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LVVLYDHHVKGVSDLLIDLQHDFHEIITSSTHIHLNEDQCLEMILVKGKMERIKVLVDKI
HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
SAARGVMNVKLISAVKKV
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475