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Identifier: 11498139

GI number: 11498139

Start: 480565

End: 481263

Strand: Reverse

Name: Not Available

Synonym: AF0528

Alternate gene names: 11498139

Gene position: 481263-480565 (Counterclockwise)

Preceding gene: 11498145

Following gene: 11498138

Centisome position: 22.09

GC content: 48.07

Gene sequence:

>699_bases
ATGTACTATACAAGAATCACGCAAATTGAGCGATTAACTGACGAGGTGGCTACACTGTACTTCAGTATCAGCCTGCGGTC
TTACCCCGGTCAGTTCGTAATGGTTTACGTTCCGGGTTGTGAGGAAATACCACTCAGCCTATCCTCCTCAAATTCGGTAA
CGGTGAAGGCCGTTGGCGAGACCACCGCAAGTCTGATTAATGCAAAAGAGGGGCAGTATGTCGGTGTAAGGGGTGCGTTC
GGCAGCGCCTTCACGCCATCAAAGCGCGCCCTTATCGTTGCGGGGGGTATTGGAATTGCACCAATGAAGTATCTTTACGA
GTACCTGATGAAATGCGGCTCAAAAGTGAGTGTTGTTTATGGCGAGAGAACCGCCAAAAACTTATTTTGGCTTGATAAAT
TTGACAGAATCACGGTTACAACCGAGGACGGAAGTTTTGGTTTAAAGGGAACCGTTTTAGATGCCCTAAAGCTTGAAAAG
CTCGATGAATACGAAAAAATCTACGTTTGCGGAAGCGAGGGGATGCTGAGAGCAACATACGACTTTTTGAAGGAGAGGGA
TGCACTTGACAAGGCTGAGTTCTCGCTTGAAAGGTACATGAGGTGCGGCATTGGTGTTTGTGGCTCTTGCGTGATAGAGA
ATGGTCTGAGAGTTTGCGCTGATGGGCCGGTTTTTAATGCCTCCGAACTGCCGTGGTAA

Upstream 100 bases:

>100_bases
TTATGGTAAAAGCATTGCAACTTAGTTGCAATCAAACTAAACAATTAACTGTTTAAGATTTTCCGAATATCTTTATAAAT
GTTGCTGTCGAGGCGGGGGC

Downstream 100 bases:

>100_bases
CAATATTTAAATTCACTGAAATAGGAAGGGAGAAGGATGAAAGAAAAGAGGCTAATCATAAAGAGAAGTGGTTATCCTTC
TAAGGGCGAGATTGTCATAG

Product: cytochrome-c3 hydrogenase, subunit gamma

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MYYTRITQIERLTDEVATLYFSISLRSYPGQFVMVYVPGCEEIPLSLSSSNSVTVKAVGETTASLINAKEGQYVGVRGAF
GSAFTPSKRALIVAGGIGIAPMKYLYEYLMKCGSKVSVVYGERTAKNLFWLDKFDRITVTTEDGSFGLKGTVLDALKLEK
LDEYEKIYVCGSEGMLRATYDFLKERDALDKAEFSLERYMRCGIGVCGSCVIENGLRVCADGPVFNASELPW

Sequences:

>Translated_232_residues
MYYTRITQIERLTDEVATLYFSISLRSYPGQFVMVYVPGCEEIPLSLSSSNSVTVKAVGETTASLINAKEGQYVGVRGAF
GSAFTPSKRALIVAGGIGIAPMKYLYEYLMKCGSKVSVVYGERTAKNLFWLDKFDRITVTTEDGSFGLKGTVLDALKLEK
LDEYEKIYVCGSEGMLRATYDFLKERDALDKAEFSLERYMRCGIGVCGSCVIENGLRVCADGPVFNASELPW
>Mature_232_residues
MYYTRITQIERLTDEVATLYFSISLRSYPGQFVMVYVPGCEEIPLSLSSSNSVTVKAVGETTASLINAKEGQYVGVRGAF
GSAFTPSKRALIVAGGIGIAPMKYLYEYLMKCGSKVSVVYGERTAKNLFWLDKFDRITVTTEDGSFGLKGTVLDALKLEK
LDEYEKIYVCGSEGMLRATYDFLKERDALDKAEFSLERYMRCGIGVCGSCVIENGLRVCADGPVFNASELPW

Specific function: Is responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+)

COG id: COG0543

COG function: function code HC; 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding FR-type domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PYRK_ARCFU (O29722)

Other databases:

- EMBL:   AE000782
- PIR:   H69315
- RefSeq:   NP_069364.1
- ProteinModelPortal:   O29722
- SMR:   O29722
- GeneID:   1483745
- GenomeReviews:   AE000782_GR
- KEGG:   afu:AF0528
- NMPDR:   fig|224325.1.peg.523
- TIGR:   AF_0528
- HOGENOM:   HBG730970
- OMA:   RYMKCGI
- ProtClustDB:   CLSK2746473
- BioCyc:   AFUL224325:AF_0528-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01211_A
- InterPro:   IPR012165
- InterPro:   IPR019480
- InterPro:   IPR017927
- InterPro:   IPR001433
- InterPro:   IPR017938
- PIRSF:   PIRSF006816

Pfam domain/function: PF10418 DHODB_Fe-S_bind; PF00175 NAD_binding_1; SSF63380 Riboflavin_synthase_like_b-brl

EC number: NA

Molecular weight: Translated: 25640; Mature: 25640

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS00197 2FE2S_FER_1; PS51384 FAD_FR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYYTRITQIERLTDEVATLYFSISLRSYPGQFVMVYVPGCEEIPLSLSSSNSVTVKAVGE
CCCCHHHHHHHHHHHHEEEEEEEEEECCCCCEEEEEECCCCCCCEEECCCCCEEEEECCC
TTASLINAKEGQYVGVRGAFGSAFTPSKRALIVAGGIGIAPMKYLYEYLMKCGSKVSVVY
HHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEE
GERTAKNLFWLDKFDRITVTTEDGSFGLKGTVLDALKLEKLDEYEKIYVCGSEGMLRATY
CCCCCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
DFLKERDALDKAEFSLERYMRCGIGVCGSCVIENGLRVCADGPVFNASELPW
HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEECCCCCCCCCCCC
>Mature Secondary Structure
MYYTRITQIERLTDEVATLYFSISLRSYPGQFVMVYVPGCEEIPLSLSSSNSVTVKAVGE
CCCCHHHHHHHHHHHHEEEEEEEEEECCCCCEEEEEECCCCCCCEEECCCCCEEEEECCC
TTASLINAKEGQYVGVRGAFGSAFTPSKRALIVAGGIGIAPMKYLYEYLMKCGSKVSVVY
HHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEE
GERTAKNLFWLDKFDRITVTTEDGSFGLKGTVLDALKLEKLDEYEKIYVCGSEGMLRATY
CCCCCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
DFLKERDALDKAEFSLERYMRCGIGVCGSCVIENGLRVCADGPVFNASELPW
HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475