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Identifier: 11498137

GI number: 11498137

Start: 479549

End: 479728

Strand: Reverse

Name: Not Available

Synonym: AF0526

Alternate gene names: NA

Gene position: 479728-479549 (Counterclockwise)

Preceding gene: 11498138

Following gene: 11498136

Centisome position: 22.02

GC content: 47.22

Gene sequence:

>180_bases
ATGAAGGTTTTGATGCGAAAGTGCGGAAAATGCGGAAGGTACACGCTGAAGGAGAGATGTCCTGTGTGCGGTGAGAGGAC
TCACATGCCAATCCCACCGAGATTTTCGATTGAAGACCCTTACGGTAAGTACAGGAGAAAGTTGAGGAAGGAAATTGGAT
TTTTCAGCTTTCGGAGGTGA

Upstream 100 bases:

>100_bases
ATTACAAAACCGCCGAAAACGTTTTGAAGAAGGCCACAGAAAATGTACTGAAAGCGATCAAAAAGCTTGGTGGAGAGGGC
AACTTCATCAGGGAAGCGGC

Downstream 100 bases:

>100_bases
ATGAATGTTAGAAAAGGTTGATGTAAGATTTTTGAAATCCCCGGAGGAGGTGGGGCTTGAAAACCCCGTCTTCATAGAGG
GGCTTCCCGGCATTGGGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 59; Mature: 59

Protein sequence:

>59_residues
MKVLMRKCGKCGRYTLKERCPVCGERTHMPIPPRFSIEDPYGKYRRKLRKEIGFFSFRR

Sequences:

>Translated_59_residues
MKVLMRKCGKCGRYTLKERCPVCGERTHMPIPPRFSIEDPYGKYRRKLRKEIGFFSFRR
>Mature_59_residues
MKVLMRKCGKCGRYTLKERCPVCGERTHMPIPPRFSIEDPYGKYRRKLRKEIGFFSFRR

Specific function: Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA

COG id: COG2260

COG function: function code J; Predicted Zn-ribbon RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NOP10 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NOP10_ARCFU (O29724)

Other databases:

- EMBL:   AE000782
- PIR:   F69315
- RefSeq:   NP_069362.1
- ProteinModelPortal:   O29724
- SMR:   O29724
- GeneID:   1483743
- GenomeReviews:   AE000782_GR
- KEGG:   afu:AF0526
- NMPDR:   fig|224325.1.peg.521
- TIGR:   AF_0526
- HOGENOM:   HBG498094
- OMA:   KYGKYRR
- ProtClustDB:   CLSK2746471
- BioCyc:   AFUL224325:AF_0526-MONOMER
- HAMAP:   MF_00803
- InterPro:   IPR007264

Pfam domain/function: PF04135 Nop10p

EC number: NA

Molecular weight: Translated: 7155; Mature: 7155

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.8 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
11.9 %Cys+Met (Translated Protein)
6.8 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
11.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLMRKCGKCGRYTLKERCPVCGERTHMPIPPRFSIEDPYGKYRRKLRKEIGFFSFRR
CCHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKVLMRKCGKCGRYTLKERCPVCGERTHMPIPPRFSIEDPYGKYRRKLRKEIGFFSFRR
CCHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475