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Identifier: 11497857

GI number: 11497857

Start: 216526

End: 216945

Strand: Reverse

Name: Not Available

Synonym: AF0241

Alternate gene names: 11497857

Gene position: 216945-216526 (Counterclockwise)

Preceding gene: 11497861

Following gene: 11497854

Centisome position: 9.96

GC content: 49.29

Gene sequence:

>420_bases
ATGATTCTGAAACCCATAGGAGTTGTTAAATCGCCATTCAAAACTCAAAACGATGCCCCAAGACAGGGGAGGTTCTCCGA
TGCGGTTTCGGAGATAGCCATCTTTGATGAATACGCTGATGGATTGCACAAAATTGAGAACTTACGCCATATCATCGTGC
TTTACTGGATGGATAAAGCCAGCAGAGATAAGCTGAGAGTTGTGCCACCCGGAGAGACCGAAGAGAGGGGTGTCTTCACC
ACCCGCTCTCCGAGCAGGCCGAATCCGATTGGACTCTGCGTTGTGGAGATTCTTGAGGTTGAGAGGAATAGACTGAAGGT
CAGATGGCTTGACGCTCTCGACGGCTCTCCGGTTATCGACATCAAGAAGTATTCTCCCGAGATCGACTGCGTCAATCAGC
TTGAAGGTCAACAACCCTAA

Upstream 100 bases:

>100_bases
ATCGGCCAGAGCCTCGTTGCGTAACCGCCCGCCATTATTATGACTTTCATCGTGCTGTCTTTGTTCAAAAAGAATAAAAA
GCTTTTGAGGGAGTCAAAAT

Downstream 100 bases:

>100_bases
ATGCCTCTACATCCACCAGTCCCAGGTCCGTGAGCTTCAGCTTGGGTATAACGGGTAAGGCGATGAAGGATAGGGTGATA
ACTGGGGACTTCAGCCTGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MILKPIGVVKSPFKTQNDAPRQGRFSDAVSEIAIFDEYADGLHKIENLRHIIVLYWMDKASRDKLRVVPPGETEERGVFT
TRSPSRPNPIGLCVVEILEVERNRLKVRWLDALDGSPVIDIKKYSPEIDCVNQLEGQQP

Sequences:

>Translated_139_residues
MILKPIGVVKSPFKTQNDAPRQGRFSDAVSEIAIFDEYADGLHKIENLRHIIVLYWMDKASRDKLRVVPPGETEERGVFT
TRSPSRPNPIGLCVVEILEVERNRLKVRWLDALDGSPVIDIKKYSPEIDCVNQLEGQQP
>Mature_139_residues
MILKPIGVVKSPFKTQNDAPRQGRFSDAVSEIAIFDEYADGLHKIENLRHIIVLYWMDKASRDKLRVVPPGETEERGVFT
TRSPSRPNPIGLCVVEILEVERNRLKVRWLDALDGSPVIDIKKYSPEIDCVNQLEGQQP

Specific function: Unknown

COG id: COG1720

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0066 (virR) family

Homologues:

Organism=Homo sapiens, GI118600979, Length=137, Percent_Identity=34.3065693430657, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI1786393, Length=132, Percent_Identity=39.3939393939394, Blast_Score=80, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24586408, Length=135, Percent_Identity=36.2962962962963, Blast_Score=84, Evalue=3e-17,
Organism=Drosophila melanogaster, GI45552503, Length=135, Percent_Identity=36.2962962962963, Blast_Score=84, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y241_ARCFU (O29998)

Other databases:

- EMBL:   AE000782
- PIR:   A69280
- RefSeq:   NP_069079.1
- PDB:   2NV4
- PDBsum:   2NV4
- ProteinModelPortal:   O29998
- SMR:   O29998
- GeneID:   1483452
- GenomeReviews:   AE000782_GR
- KEGG:   afu:AF0241
- NMPDR:   fig|224325.1.peg.238
- TIGR:   AF_0241
- HOGENOM:   HBG419053
- OMA:   FIGRIRT
- ProtClustDB:   CLSK687823
- BioCyc:   AFUL224325:AF_0241-MONOMER
- InterPro:   IPR001378
- TIGRFAMs:   TIGR00104

Pfam domain/function: PF01980 UPF0066

EC number: NA

Molecular weight: Translated: 15809; Mature: 15809

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS01318 UPF0066

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILKPIGVVKSPFKTQNDAPRQGRFSDAVSEIAIFDEYADGLHKIENLRHIIVLYWMDKA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCC
SRDKLRVVPPGETEERGVFTTRSPSRPNPIGLCVVEILEVERNRLKVRWLDALDGSPVID
CCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCEEE
IKKYSPEIDCVNQLEGQQP
EECCCCCCCHHHHCCCCCC
>Mature Secondary Structure
MILKPIGVVKSPFKTQNDAPRQGRFSDAVSEIAIFDEYADGLHKIENLRHIIVLYWMDKA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCC
SRDKLRVVPPGETEERGVFTTRSPSRPNPIGLCVVEILEVERNRLKVRWLDALDGSPVID
CCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCEEE
IKKYSPEIDCVNQLEGQQP
EECCCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475