Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 11497691

GI number: 11497691

Start: 68830

End: 71109

Strand: Reverse

Name: Not Available

Synonym: AF0071

Alternate gene names: 11497691

Gene position: 71109-68830 (Counterclockwise)

Preceding gene: 11497692

Following gene: 11497690

Centisome position: 3.26

GC content: 39.34

Gene sequence:

>2280_bases
ATGGTGATTAAAGCCTTTCGCAAATTAACAGGCCATAGTCCATACGAATATCAAAAGGAAGCAATGGATAATTTACTGGA
GGGAAAATCCCTGATTATTAGAGCGCCGACCGGTGCCGGAAAAACTGAAGCATCTTTAATTCCTTTTATTTATGGCCTCA
ATGACTACTTACCACCTCAGTTGATTTATTCGCTTCCGACAAGAACTTTAGTGGAAAGTATTGGCGAACGTGCTATTAAG
TATGCTTCATTCAAAAAACTAAGAGTAGCAATTCATCATGGCAAAAAGGCAACAAGTAGCCTTTTCGAGGAGGATATTAT
TGTCACAACAATCGATCAGACTGCTGGGGCATATTTGAGCGTTCCCTTAAGCATGCCAAAAAGGTGGGGAAACATTTTTG
TAGGTGGTATTGCATCAGCTCTGACCGTTTTTGATGAAGTACACACTCTTGACCCAGAAAAAGGTCTTCAAACTGCTGCA
GCAATCGCTATGCAATCTGCAAAACTTGGCCTTCCTTCAATCATAATGTCTGCTACTCTACCAGATGTTTTCATTGAACG
TGTCAAGGAAAGAATAGAGAAAAATGGAGGTAAAGTCGAGATTATGGACGTGAAGAATGAATCAGAAATCAAATCGAGGA
GAAATCGAAAAGTTGAACTTATAAATAGACCTGATGAAATGTTAACGGCAGATACTGTTCTAAAGGAGGCTGAGAACTGC
AGAAAACTTGTTGTAGTTGTTAACACTGTCGAACGAGCACAAAACCTGTACCTCGATCTAAGGAAGAAAATAGACTATCC
CATTTTTCTCCTGCATTCCAGATATCTAGAAAAAGATCGGGCAGAAAAGGAGAAATCCTTTGAAAAAGTATTCGGTAAGA
ATGGTAAAGGCGAGTGTATATTTATCTCTACACAAGTAATAGAAGTAGGAATGGATATCTCATCTCCAATAATTCTGTCA
GAAGTTGCTCCAATTGATGCACTGATACAAAGGGCTGGGAGATGTGCAAGGTGGGGTGGCAATGGAGAATTTCACGTTTT
TGGGCTCGCCAGAGACAGTAGCAATCCATATGCTCCATATCTTAAAGAGCTAATCGAGAGTACAATAACTGAAATCAGGA
GTAAAGGGGATTTTCCTTTAGATTGGCAAACTGAACTCCAACTCGTCAACAATGTACTTTCAAGTCATTTTGAGTTTTTC
ATGGATTCGAAGTTTTTCTACCAGAGACTTGGGGAACTTGCAAGAGCTGTTTATGAAGGTAGTAAGGCAAAGGTGGAGCA
GAACGTTAGAGAAATTTTTTCGTGTGATATTACACTTCATGAAAATCCTGACACTCTAGAACCAGAGGAAATCTTGGCAC
TGCCGAGAATACGTGTTGATGCGCGAGTTTTAAGTGGTAAAGTTGAGAAGCTTGCGGAGTTAGGCATAAAAACATACAAA
CTAGAAGAAAATCCGGTAATTGGAGATTATGAAAGCAAATACACGCTAGTACTTGTAAAAAGTAAAGAAGATGTAACCCC
ATTTCAACTTTATGTTCTGAGTGGTGCTTGCTATTCTCCAGAAGTCGGGCTTGTGCTTGGCAAATCTGCTCCTAATGCAA
TCAAATCCTTTGAGCCCGATAAACTGAAACTTAAAGGTATTAAAAGCCAAGCTGATTATAAACTTGAGAAAGAGAGTTGG
GTTGAACACGCAAAGAACTCTCTATGGGTACTCGACTGCTACCTAATTCCTCGTTATTACTATGTTATCAAAAATTTCGC
TGATTACTTCGGGTACGAGTATAATGAGTTTGTCAATCTTATTAAATGCATAACGGCACTACATGATCTGGGCAAATTAA
ACATAAATTGGCAGGAGAAAGTAGGATGGAATGGCAAAATACCTTTAGCCCATTCAGATGAAAGTGACGTCAGAAAATTG
CCCCCACACGCAACTGTTTCTGCAAAAGCCTTGCAACCTTATTTAGAAAGTTTATTTGATGACGCAGGTGTATTCAAAGC
ATTCTATTTGGCAATTGCTCATCACCACGGACCGTGGGCGAGAGAATACAAAGAATACCGTCTAATTCCAGAATTCAACA
AATTCATTGAGGAGGTCTGGAGCGTTCCGAAAGAGTTGATTAAAGTCCATGATTCAGCCAATAGGCTTGATTTTACGTAC
TTAAATGTAGCTGATGAGAATGAGGCTTACAGACTTTATGGTTTGCTTTCTAAATTGATAAGAATTTCAGACAGACTTGC
TACTGGAGGTGCAAGTTATGAATCGATATTTTCTGCCTAA

Upstream 100 bases:

>100_bases
TATGGCGAATCTAATGAGCTTAGGTTTACCGGTAACTGGTTTATTGATGCAGGGATTTTGGGGTTTGTTAATTTGATGGA
GGGAATTTACAGGGGGATTT

Downstream 100 bases:

>100_bases
AACTGGCTGGGAGTTTTTTGATGTATCAAGGGCCTATGGAGTGGGGGTTATCGTGCATACACTGAGCGGAGACGCAGTTG
TAAGCGACATGGGTGGATTA

Product: ATP-dependent RNA helicase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 759; Mature: 759

Protein sequence:

>759_residues
MVIKAFRKLTGHSPYEYQKEAMDNLLEGKSLIIRAPTGAGKTEASLIPFIYGLNDYLPPQLIYSLPTRTLVESIGERAIK
YASFKKLRVAIHHGKKATSSLFEEDIIVTTIDQTAGAYLSVPLSMPKRWGNIFVGGIASALTVFDEVHTLDPEKGLQTAA
AIAMQSAKLGLPSIIMSATLPDVFIERVKERIEKNGGKVEIMDVKNESEIKSRRNRKVELINRPDEMLTADTVLKEAENC
RKLVVVVNTVERAQNLYLDLRKKIDYPIFLLHSRYLEKDRAEKEKSFEKVFGKNGKGECIFISTQVIEVGMDISSPIILS
EVAPIDALIQRAGRCARWGGNGEFHVFGLARDSSNPYAPYLKELIESTITEIRSKGDFPLDWQTELQLVNNVLSSHFEFF
MDSKFFYQRLGELARAVYEGSKAKVEQNVREIFSCDITLHENPDTLEPEEILALPRIRVDARVLSGKVEKLAELGIKTYK
LEENPVIGDYESKYTLVLVKSKEDVTPFQLYVLSGACYSPEVGLVLGKSAPNAIKSFEPDKLKLKGIKSQADYKLEKESW
VEHAKNSLWVLDCYLIPRYYYVIKNFADYFGYEYNEFVNLIKCITALHDLGKLNINWQEKVGWNGKIPLAHSDESDVRKL
PPHATVSAKALQPYLESLFDDAGVFKAFYLAIAHHHGPWAREYKEYRLIPEFNKFIEEVWSVPKELIKVHDSANRLDFTY
LNVADENEAYRLYGLLSKLIRISDRLATGGASYESIFSA

Sequences:

>Translated_759_residues
MVIKAFRKLTGHSPYEYQKEAMDNLLEGKSLIIRAPTGAGKTEASLIPFIYGLNDYLPPQLIYSLPTRTLVESIGERAIK
YASFKKLRVAIHHGKKATSSLFEEDIIVTTIDQTAGAYLSVPLSMPKRWGNIFVGGIASALTVFDEVHTLDPEKGLQTAA
AIAMQSAKLGLPSIIMSATLPDVFIERVKERIEKNGGKVEIMDVKNESEIKSRRNRKVELINRPDEMLTADTVLKEAENC
RKLVVVVNTVERAQNLYLDLRKKIDYPIFLLHSRYLEKDRAEKEKSFEKVFGKNGKGECIFISTQVIEVGMDISSPIILS
EVAPIDALIQRAGRCARWGGNGEFHVFGLARDSSNPYAPYLKELIESTITEIRSKGDFPLDWQTELQLVNNVLSSHFEFF
MDSKFFYQRLGELARAVYEGSKAKVEQNVREIFSCDITLHENPDTLEPEEILALPRIRVDARVLSGKVEKLAELGIKTYK
LEENPVIGDYESKYTLVLVKSKEDVTPFQLYVLSGACYSPEVGLVLGKSAPNAIKSFEPDKLKLKGIKSQADYKLEKESW
VEHAKNSLWVLDCYLIPRYYYVIKNFADYFGYEYNEFVNLIKCITALHDLGKLNINWQEKVGWNGKIPLAHSDESDVRKL
PPHATVSAKALQPYLESLFDDAGVFKAFYLAIAHHHGPWAREYKEYRLIPEFNKFIEEVWSVPKELIKVHDSANRLDFTY
LNVADENEAYRLYGLLSKLIRISDRLATGGASYESIFSA
>Mature_759_residues
MVIKAFRKLTGHSPYEYQKEAMDNLLEGKSLIIRAPTGAGKTEASLIPFIYGLNDYLPPQLIYSLPTRTLVESIGERAIK
YASFKKLRVAIHHGKKATSSLFEEDIIVTTIDQTAGAYLSVPLSMPKRWGNIFVGGIASALTVFDEVHTLDPEKGLQTAA
AIAMQSAKLGLPSIIMSATLPDVFIERVKERIEKNGGKVEIMDVKNESEIKSRRNRKVELINRPDEMLTADTVLKEAENC
RKLVVVVNTVERAQNLYLDLRKKIDYPIFLLHSRYLEKDRAEKEKSFEKVFGKNGKGECIFISTQVIEVGMDISSPIILS
EVAPIDALIQRAGRCARWGGNGEFHVFGLARDSSNPYAPYLKELIESTITEIRSKGDFPLDWQTELQLVNNVLSSHFEFF
MDSKFFYQRLGELARAVYEGSKAKVEQNVREIFSCDITLHENPDTLEPEEILALPRIRVDARVLSGKVEKLAELGIKTYK
LEENPVIGDYESKYTLVLVKSKEDVTPFQLYVLSGACYSPEVGLVLGKSAPNAIKSFEPDKLKLKGIKSQADYKLEKESW
VEHAKNSLWVLDCYLIPRYYYVIKNFADYFGYEYNEFVNLIKCITALHDLGKLNINWQEKVGWNGKIPLAHSDESDVRKL
PPHATVSAKALQPYLESLFDDAGVFKAFYLAIAHHHGPWAREYKEYRLIPEFNKFIEEVWSVPKELIKVHDSANRLDFTY
LNVADENEAYRLYGLLSKLIRISDRLATGGASYESIFSA

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: NA

Molecular weight: Translated: 86005; Mature: 86005

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIKAFRKLTGHSPYEYQKEAMDNLLEGKSLIIRAPTGAGKTEASLIPFIYGLNDYLPPQ
CHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCHH
LIYSLPTRTLVESIGERAIKYASFKKLRVAIHHGKKATSSLFEEDIIVTTIDQTAGAYLS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEECCCCCCEEE
VPLSMPKRWGNIFVGGIASALTVFDEVHTLDPEKGLQTAAAIAMQSAKLGLPSIIMSATL
ECCCCCHHHCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCC
PDVFIERVKERIEKNGGKVEIMDVKNESEIKSRRNRKVELINRPDEMLTADTVLKEAENC
HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCC
RKLVVVVNTVERAQNLYLDLRKKIDYPIFLLHSRYLEKDRAEKEKSFEKVFGKNGKGECI
CEEEEEHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
FISTQVIEVGMDISSPIILSEVAPIDALIQRAGRCARWGGNGEFHVFGLARDSSNPYAPY
EEEEEEHEECCCCCCCCHHHHCCCHHHHHHHCCCEECCCCCCCEEEEEEEECCCCCCHHH
LKELIESTITEIRSKGDFPLDWQTELQLVNNVLSSHFEFFMDSKFFYQRLGELARAVYEG
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
SKAKVEQNVREIFSCDITLHENPDTLEPEEILALPRIRVDARVLSGKVEKLAELGIKTYK
CHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEE
LEENPVIGDYESKYTLVLVKSKEDVTPFQLYVLSGACYSPEVGLVLGKSAPNAIKSFEPD
ECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCEEECCCCCHHHHCCCCC
KLKLKGIKSQADYKLEKESWVEHAKNSLWVLDCYLIPRYYYVIKNFADYFGYEYNEFVNL
CEEEECCCCCCCCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHH
IKCITALHDLGKLNINWQEKVGWNGKIPLAHSDESDVRKLPPHATVSAKALQPYLESLFD
HHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHC
DAGVFKAFYLAIAHHHGPWAREYKEYRLIPEFNKFIEEVWSVPKELIKVHDSANRLDFTY
CHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LNVADENEAYRLYGLLSKLIRISDRLATGGASYESIFSA
EEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
>Mature Secondary Structure
MVIKAFRKLTGHSPYEYQKEAMDNLLEGKSLIIRAPTGAGKTEASLIPFIYGLNDYLPPQ
CHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCHH
LIYSLPTRTLVESIGERAIKYASFKKLRVAIHHGKKATSSLFEEDIIVTTIDQTAGAYLS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEEEEECCCCCCEEE
VPLSMPKRWGNIFVGGIASALTVFDEVHTLDPEKGLQTAAAIAMQSAKLGLPSIIMSATL
ECCCCCHHHCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCC
PDVFIERVKERIEKNGGKVEIMDVKNESEIKSRRNRKVELINRPDEMLTADTVLKEAENC
HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCC
RKLVVVVNTVERAQNLYLDLRKKIDYPIFLLHSRYLEKDRAEKEKSFEKVFGKNGKGECI
CEEEEEHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
FISTQVIEVGMDISSPIILSEVAPIDALIQRAGRCARWGGNGEFHVFGLARDSSNPYAPY
EEEEEEHEECCCCCCCCHHHHCCCHHHHHHHCCCEECCCCCCCEEEEEEEECCCCCCHHH
LKELIESTITEIRSKGDFPLDWQTELQLVNNVLSSHFEFFMDSKFFYQRLGELARAVYEG
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
SKAKVEQNVREIFSCDITLHENPDTLEPEEILALPRIRVDARVLSGKVEKLAELGIKTYK
CHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEE
LEENPVIGDYESKYTLVLVKSKEDVTPFQLYVLSGACYSPEVGLVLGKSAPNAIKSFEPD
ECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCEEECCCCCHHHHCCCCC
KLKLKGIKSQADYKLEKESWVEHAKNSLWVLDCYLIPRYYYVIKNFADYFGYEYNEFVNL
CEEEECCCCCCCCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHH
IKCITALHDLGKLNINWQEKVGWNGKIPLAHSDESDVRKLPPHATVSAKALQPYLESLFD
HHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHC
DAGVFKAFYLAIAHHHGPWAREYKEYRLIPEFNKFIEEVWSVPKELIKVHDSANRLDFTY
CHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LNVADENEAYRLYGLLSKLIRISDRLATGGASYESIFSA
EEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]