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The map label for this gene is ybhS [H]

Identifier: 114800421

GI number: 114800421

Start: 1567881

End: 1569017

Strand: Direct

Name: ybhS [H]

Synonym: HNE_1535

Alternate gene names: 114800421

Gene position: 1567881-1569017 (Clockwise)

Preceding gene: 114797777

Following gene: 114799431

Centisome position: 42.32

GC content: 59.72

Gene sequence:

>1137_bases
ATGCAACTGTCGCGGCTTCCTGCTCCTGTGCGTCGAGCCTTCTCGCTTGCGCGAAAGGAAACATTCCAGATTTTTCGTGA
CCCTTCTTCGATCCTGATCGCGTTCGTGCTACCGCTTATCCTTCTCCTTCTGTTCGGGTTCGGAATATCGCTCGATGCCA
ATTCGATCCGGATTGGCATCGTGGTACAGGACGCACGCACCGATGCGCGCAGTCTTGTCCAGGCATTTGAAGGTTCCGAC
TATTTCGAAACCGTCACGGCCTTCGACCAGGCGGCGCTTGAGCCGGGCCTTGTATCCGGTCAGCTGCGCGGCCTCGTCAT
CATTCCGCCGGACTTCACCGAACGCCTGCGCAGGCGCGACCCGGCCCCCATCGAGATCCTGACCGACGGCTCGCAGCCCA
ATACCGCTCAGTTCGTCGCGAACTATGCCCAGGGAGTCTACAGCGTATGGCAGGCACGCCGGCTCGCAGACGCGGCCCTG
CCAGTCCCGGCGGCGATAACCCCGCAACCCCGCTTCTGGTTCAATGCCGAACTGACCAGTCGCTACAATCTCGTGCCGGG
GTCCACGGCAGTTGTGATGACCATCATCGGCACATTGTTGACGGCGCTGGTAATCGCCCGCGAATGGGAGCGCGGCACCA
TGGAAGCGGTCCTTGCCACACCGGTGAGCCGGGTAGAATTATTGGTGTCAAAGATCTTGCCTTATTTTCTGCTGGGCATG
AGCTCTCTGGTGCTGTGCACCCTGGCAGCGGTATTCGTTTTTGATGTCCCGTTCCGAGGCTCGGTCTTTGCGCTTGCAGC
GGTTGCCGCAGCTTTCCTGGTGCCCGCCCTTGGTCAGGGATTGCTGATCTCCGCGGCGACCAAGAACCAGTTTGTTGCGG
CTCAGCTGGCGCTTTTCACAGGCTTCCTGCCGGCAACGTTGCTATCGGGGTTTATCTTCGAAATCAGCGCGATGCCGCTG
CCGATCCGCACGGTCACCACCTTTATCCCGGCGCGTTATTTCGTGAGCAGTTTGCAGACACTGTTTCTGGCAGGGGATGT
CTGGTCGGTTCTATGGCCAGCGATCCTGAAGATGCTGGCCGTCGGCACCTTTTTCCTGATGCTGACATGGCTGGCTACGC
CGAAGCGGATCGCCTGA

Upstream 100 bases:

>100_bases
CGTTGAAGGCGAGCTGTGCCAATCCAAACGGCTCGAGCGTGACCATGGAAGAAGCATTTATCGAGCTGGTTGCGCGATCT
GAAAAACAAGAGGCCGCCTG

Downstream 100 bases:

>100_bases
CATGTGGCGGCGCTTGCTTGCTCTGATCATCAAGGAGATGCTCGCCATTTGGCGTGATCCCAAGGGGCGCGCGGTGATCC
TTGTGCCCCCCCTTCTTCAA

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MQLSRLPAPVRRAFSLARKETFQIFRDPSSILIAFVLPLILLLLFGFGISLDANSIRIGIVVQDARTDARSLVQAFEGSD
YFETVTAFDQAALEPGLVSGQLRGLVIIPPDFTERLRRRDPAPIEILTDGSQPNTAQFVANYAQGVYSVWQARRLADAAL
PVPAAITPQPRFWFNAELTSRYNLVPGSTAVVMTIIGTLLTALVIAREWERGTMEAVLATPVSRVELLVSKILPYFLLGM
SSLVLCTLAAVFVFDVPFRGSVFALAAVAAAFLVPALGQGLLISAATKNQFVAAQLALFTGFLPATLLSGFIFEISAMPL
PIRTVTTFIPARYFVSSLQTLFLAGDVWSVLWPAILKMLAVGTFFLMLTWLATPKRIA

Sequences:

>Translated_378_residues
MQLSRLPAPVRRAFSLARKETFQIFRDPSSILIAFVLPLILLLLFGFGISLDANSIRIGIVVQDARTDARSLVQAFEGSD
YFETVTAFDQAALEPGLVSGQLRGLVIIPPDFTERLRRRDPAPIEILTDGSQPNTAQFVANYAQGVYSVWQARRLADAAL
PVPAAITPQPRFWFNAELTSRYNLVPGSTAVVMTIIGTLLTALVIAREWERGTMEAVLATPVSRVELLVSKILPYFLLGM
SSLVLCTLAAVFVFDVPFRGSVFALAAVAAAFLVPALGQGLLISAATKNQFVAAQLALFTGFLPATLLSGFIFEISAMPL
PIRTVTTFIPARYFVSSLQTLFLAGDVWSVLWPAILKMLAVGTFFLMLTWLATPKRIA
>Mature_378_residues
MQLSRLPAPVRRAFSLARKETFQIFRDPSSILIAFVLPLILLLLFGFGISLDANSIRIGIVVQDARTDARSLVQAFEGSD
YFETVTAFDQAALEPGLVSGQLRGLVIIPPDFTERLRRRDPAPIEILTDGSQPNTAQFVANYAQGVYSVWQARRLADAAL
PVPAAITPQPRFWFNAELTSRYNLVPGSTAVVMTIIGTLLTALVIAREWERGTMEAVLATPVSRVELLVSKILPYFLLGM
SSLVLCTLAAVFVFDVPFRGSVFALAAVAAAFLVPALGQGLLISAATKNQFVAAQLALFTGFLPATLLSGFIFEISAMPL
PIRTVTTFIPARYFVSSLQTLFLAGDVWSVLWPAILKMLAVGTFFLMLTWLATPKRIA

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=368, Percent_Identity=47.8260869565217, Blast_Score=359, Evalue=1e-100,
Organism=Escherichia coli, GI48994943, Length=369, Percent_Identity=28.9972899728997, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1787010, Length=358, Percent_Identity=27.0949720670391, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI226510979, Length=393, Percent_Identity=24.1730279898219, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 41199; Mature: 41199

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLSRLPAPVRRAFSLARKETFQIFRDPSSILIAFVLPLILLLLFGFGISLDANSIRIGI
CCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
VVQDARTDARSLVQAFEGSDYFETVTAFDQAALEPGLVSGQLRGLVIIPPDFTERLRRRD
EEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHCCC
PAPIEILTDGSQPNTAQFVANYAQGVYSVWQARRLADAALPVPAAITPQPRFWFNAELTS
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCC
RYNLVPGSTAVVMTIIGTLLTALVIAREWERGTMEAVLATPVSRVELLVSKILPYFLLGM
CEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
SSLVLCTLAAVFVFDVPFRGSVFALAAVAAAFLVPALGQGLLISAATKNQFVAAQLALFT
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
GFLPATLLSGFIFEISAMPLPIRTVTTFIPARYFVSSLQTLFLAGDVWSVLWPAILKMLA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGTFFLMLTWLATPKRIA
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQLSRLPAPVRRAFSLARKETFQIFRDPSSILIAFVLPLILLLLFGFGISLDANSIRIGI
CCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
VVQDARTDARSLVQAFEGSDYFETVTAFDQAALEPGLVSGQLRGLVIIPPDFTERLRRRD
EEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHCCC
PAPIEILTDGSQPNTAQFVANYAQGVYSVWQARRLADAALPVPAAITPQPRFWFNAELTS
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCC
RYNLVPGSTAVVMTIIGTLLTALVIAREWERGTMEAVLATPVSRVELLVSKILPYFLLGM
CEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
SSLVLCTLAAVFVFDVPFRGSVFALAAVAAAFLVPALGQGLLISAATKNQFVAAQLALFT
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
GFLPATLLSGFIFEISAMPLPIRTVTTFIPARYFVSSLQTLFLAGDVWSVLWPAILKMLA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGTFFLMLTWLATPKRIA
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]