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The map label for this gene is yafK [H]

Identifier: 114800403

GI number: 114800403

Start: 449505

End: 450266

Strand: Reverse

Name: yafK [H]

Synonym: HNE_0455

Alternate gene names: 114800403

Gene position: 450266-449505 (Counterclockwise)

Preceding gene: 114800491

Following gene: 114798380

Centisome position: 12.15

GC content: 62.2

Gene sequence:

>762_bases
ATGAGCCCACGCCCGAAATATCGCCGTCGACCGCAGCCCAATATCTTTGCGATCCTGATCGCGATGCTGGCGTTCCTGTG
CCTGCCGGCCCTGCTCGCCTTTGCCCATGCCGATACTGTTCCGGAAACGGCGCGGTCCCGCGCGGCCTATGCGGCGCAAG
CGGAGCCGCTGAAAGCGGCGCTGGCGGAAAAGGGATTGGCACTGGGCAGCCCCGTATTCCTTCAGATTACCAAAGAGCCC
GCGGAGCTGACGGCCTATGTTCAGGATACAGAGGGCAAGTTTCAGCCCTTCCGGACCTGGCCTGTCTGCGCGGTTTCAGG
CGACCTCGGCCCGAAAATACGCGAGGGCGACCATCAGGCGCCGGAGGGCTTTTACAAGGTGACGGCCGGGCAGATGAACC
CGGCTTCAAGTTTTCACCTCTCGTTCAATCTGGGCTATCCCAATGCCTTTGACCGGGCCAATGACCGCACAGGTAGCTTC
CTGATGGTGCACGGATCCTGCGCCTCGGTGGGGTGTTTTGCGATGACGGATGAAGGGATCGAGGAAATCTGGACGCTGAT
GCAGGCCGCGTTTGAGGGCGGGCAGAAAGCGGTGGACGTGCACATCTTCCCCTTCCCCATGACGCAGCAGGCTATGGCAG
GGCGCGAAGCCAGCCCGCATGCTGCTTTCTGGGAGAGCCTGAAGCCGGCCTGGAACAAATTCTCCGCGAGCGGTGAAGTG
CCCACCGTGAGCGTTCGCGACGGTGCCTATCAGGTGCGGTGA

Upstream 100 bases:

>100_bases
AACGGCGCCTTAATGCCTGCCTTTCGGACATTTAACCAAAAATCCCGCCGCTTCCCAGAAGCCGCCCGGCTTCAGCCACA
TTCGGGATGAAGTTGGGCGC

Downstream 100 bases:

>100_bases
GCCCAGTAGGGCGAGATAGGCAGGCCGCCGTAAAGCTCCTCAAAGCGCATCCGCGTGCCGGTGTTGATGCCTTCAGGCGG
CAGCTTTGGATCGATCCATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MSPRPKYRRRPQPNIFAILIAMLAFLCLPALLAFAHADTVPETARSRAAYAAQAEPLKAALAEKGLALGSPVFLQITKEP
AELTAYVQDTEGKFQPFRTWPVCAVSGDLGPKIREGDHQAPEGFYKVTAGQMNPASSFHLSFNLGYPNAFDRANDRTGSF
LMVHGSCASVGCFAMTDEGIEEIWTLMQAAFEGGQKAVDVHIFPFPMTQQAMAGREASPHAAFWESLKPAWNKFSASGEV
PTVSVRDGAYQVR

Sequences:

>Translated_253_residues
MSPRPKYRRRPQPNIFAILIAMLAFLCLPALLAFAHADTVPETARSRAAYAAQAEPLKAALAEKGLALGSPVFLQITKEP
AELTAYVQDTEGKFQPFRTWPVCAVSGDLGPKIREGDHQAPEGFYKVTAGQMNPASSFHLSFNLGYPNAFDRANDRTGSF
LMVHGSCASVGCFAMTDEGIEEIWTLMQAAFEGGQKAVDVHIFPFPMTQQAMAGREASPHAAFWESLKPAWNKFSASGEV
PTVSVRDGAYQVR
>Mature_252_residues
SPRPKYRRRPQPNIFAILIAMLAFLCLPALLAFAHADTVPETARSRAAYAAQAEPLKAALAEKGLALGSPVFLQITKEPA
ELTAYVQDTEGKFQPFRTWPVCAVSGDLGPKIREGDHQAPEGFYKVTAGQMNPASSFHLSFNLGYPNAFDRANDRTGSFL
MVHGSCASVGCFAMTDEGIEEIWTLMQAAFEGGQKAVDVHIFPFPMTQQAMAGREASPHAAFWESLKPAWNKFSASGEVP
TVSVRDGAYQVR

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1786418, Length=185, Percent_Identity=44.8648648648649, Blast_Score=182, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 27556; Mature: 27424

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPRPKYRRRPQPNIFAILIAMLAFLCLPALLAFAHADTVPETARSRAAYAAQAEPLKAA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHH
LAEKGLALGSPVFLQITKEPAELTAYVQDTEGKFQPFRTWPVCAVSGDLGPKIREGDHQA
HHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
PEGFYKVTAGQMNPASSFHLSFNLGYPNAFDRANDRTGSFLMVHGSCASVGCFAMTDEGI
CCCEEEEECCCCCCCCEEEEEEECCCCCHHCCCCCCCCCEEEEECCCCCCEEEEECHHHH
EEIWTLMQAAFEGGQKAVDVHIFPFPMTQQAMAGREASPHAAFWESLKPAWNKFSASGEV
HHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC
PTVSVRDGAYQVR
CEEEECCCCEECC
>Mature Secondary Structure 
SPRPKYRRRPQPNIFAILIAMLAFLCLPALLAFAHADTVPETARSRAAYAAQAEPLKAA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHH
LAEKGLALGSPVFLQITKEPAELTAYVQDTEGKFQPFRTWPVCAVSGDLGPKIREGDHQA
HHHCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
PEGFYKVTAGQMNPASSFHLSFNLGYPNAFDRANDRTGSFLMVHGSCASVGCFAMTDEGI
CCCEEEEECCCCCCCCEEEEEEECCCCCHHCCCCCCCCCEEEEECCCCCCEEEEECHHHH
EEIWTLMQAAFEGGQKAVDVHIFPFPMTQQAMAGREASPHAAFWESLKPAWNKFSASGEV
HHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC
PTVSVRDGAYQVR
CEEEECCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]