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The map label for this gene is ompW [C]

Identifier: 114800389

GI number: 114800389

Start: 161673

End: 162353

Strand: Reverse

Name: ompW [C]

Synonym: HNE_0173

Alternate gene names: 114800389

Gene position: 162353-161673 (Counterclockwise)

Preceding gene: 114799802

Following gene: 114797610

Centisome position: 4.38

GC content: 58.44

Gene sequence:

>681_bases
ATGAAAAATCTCCTGATGGCCGCCCTGATGACCGGCTCAACATTCATCGGACTAGCCGGCACGGCCGCAGCGGAAGACAA
TCCCTGGATGGTCCGCGCACGCGTCATCGGCGTCATGCCGGACGAGGCTGGCGCCTTGTCAGTCGGGGGCTCCCGGCTTC
AGGGCGGCGTCGACATCGGCGATCAGTATGTGCCCGAACTCGACATCACCTACTTCTTTAACAGGAACATTGCCGCCGAG
CTTATTCTCGGTGTTACGCCCCACGACGTGAAGGCAACCAAGGTCACTGTACCCGGCGCGCTGACCGATGCCACAATAGA
CCTTGGCGATGTCTGGCTTTTGCCGCCGACCCTGACCCTGCAGTATCACTTCCAGAACGGTACCCGTTTCAAGCCGTATG
TCGGCGCCGGCATCAACGCGACATTCTTCTTCAACGAGGAGGAAGGCCCGGTTGCGGACGGCATCGATTACGATCCAAGC
TTTGGCCCTGCCCTACAGGTCGGTTTTGATTATGATCTGGACGGCGAAGAAGGCGGCTGGGCGCTCAATGCCGACATCAA
GAAGATCTGGATCAACACGGATGTAACGGTGGATTTCTCCACGGCTCTGGGCGCGGCCGTAAACGCTGACGTCGATATTG
ATCCGCTCGTTGTGGGCATTGGTCTCGGCTACAAATTCTGA

Upstream 100 bases:

>100_bases
GCCGCGCGTCCCGCAGCCGCGCGGCAAACTGATCAATTTCACCTTTTATTTCCACGCATTAGCAGTTCCCTATCCTTCAA
ATTAACCGCGGATTTCTACC

Downstream 100 bases:

>100_bases
TCTGGCCACGGTCAGAACAGGCAATACCCGCCTCTCAACCCAACCCCCGGTGGCTATTGCCTGCCGAGAACGCCGCGCCC
CCGTTCGGGACGCGGCGTTT

Product: putative outer membrane protein OmpW

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MKNLLMAALMTGSTFIGLAGTAAAEDNPWMVRARVIGVMPDEAGALSVGGSRLQGGVDIGDQYVPELDITYFFNRNIAAE
LILGVTPHDVKATKVTVPGALTDATIDLGDVWLLPPTLTLQYHFQNGTRFKPYVGAGINATFFFNEEEGPVADGIDYDPS
FGPALQVGFDYDLDGEEGGWALNADIKKIWINTDVTVDFSTALGAAVNADVDIDPLVVGIGLGYKF

Sequences:

>Translated_226_residues
MKNLLMAALMTGSTFIGLAGTAAAEDNPWMVRARVIGVMPDEAGALSVGGSRLQGGVDIGDQYVPELDITYFFNRNIAAE
LILGVTPHDVKATKVTVPGALTDATIDLGDVWLLPPTLTLQYHFQNGTRFKPYVGAGINATFFFNEEEGPVADGIDYDPS
FGPALQVGFDYDLDGEEGGWALNADIKKIWINTDVTVDFSTALGAAVNADVDIDPLVVGIGLGYKF
>Mature_226_residues
MKNLLMAALMTGSTFIGLAGTAAAEDNPWMVRARVIGVMPDEAGALSVGGSRLQGGVDIGDQYVPELDITYFFNRNIAAE
LILGVTPHDVKATKVTVPGALTDATIDLGDVWLLPPTLTLQYHFQNGTRFKPYVGAGINATFFFNEEEGPVADGIDYDPS
FGPALQVGFDYDLDGEEGGWALNADIKKIWINTDVTVDFSTALGAAVNADVDIDPLVVGIGLGYKF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=234, Percent_Identity=32.9059829059829, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 24048; Mature: 24048

Theoretical pI: Translated: 3.92; Mature: 3.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLLMAALMTGSTFIGLAGTAAAEDNPWMVRARVIGVMPDEAGALSVGGSRLQGGVDIG
CCHHEEEHHHCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCEEEECCCCCCCCCCCC
DQYVPELDITYFFNRNIAAELILGVTPHDVKATKVTVPGALTDATIDLGDVWLLPPTLTL
CCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCCCEEECCCEEEECCEEEE
QYHFQNGTRFKPYVGAGINATFFFNEEEGPVADGIDYDPSFGPALQVGFDYDLDGEEGGW
EEEECCCCEECCEECCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCE
ALNADIKKIWINTDVTVDFSTALGAAVNADVDIDPLVVGIGLGYKF
EEECCEEEEEEECCEEEEEHHHCCEEEECCCCCCEEEEEEECCCCC
>Mature Secondary Structure
MKNLLMAALMTGSTFIGLAGTAAAEDNPWMVRARVIGVMPDEAGALSVGGSRLQGGVDIG
CCHHEEEHHHCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCEEEECCCCCCCCCCCC
DQYVPELDITYFFNRNIAAELILGVTPHDVKATKVTVPGALTDATIDLGDVWLLPPTLTL
CCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCCCEEECCCEEEECCEEEE
QYHFQNGTRFKPYVGAGINATFFFNEEEGPVADGIDYDPSFGPALQVGFDYDLDGEEGGW
EEEECCCCEECCEECCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCE
ALNADIKKIWINTDVTVDFSTALGAAVNADVDIDPLVVGIGLGYKF
EEECCEEEEEEECCEEEEEHHHCCEEEECCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]