| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is yleA [C]
Identifier: 114800325
GI number: 114800325
Start: 3661527
End: 3662804
Strand: Reverse
Name: yleA [C]
Synonym: HNE_3527
Alternate gene names: 114800325
Gene position: 3662804-3661527 (Counterclockwise)
Preceding gene: 114799327
Following gene: 114799634
Centisome position: 98.86
GC content: 65.1
Gene sequence:
>1278_bases ATGGCTGATACCGCCCCGCCTTCCAGCCCGACCGTCATCACGCTCGGATGCCGCCTCAACACCTACGAGTCCGAGGTGAT GCGCCGCCATGCCCATGCGGCAGGGCTGGGCGACGCTGTCATCATCAACACCTGCGCGGTCACCTCCGAAGCCGTGCGCG GCGCCCGTCAGGCCATCCGCCGGGCGGCTCGCGACAATCCTGGCGCGCCGATCCTCGTCACCGGTTGCGCCGCCCAGACC GACCCGGAGGCCTTCGCGGCGATGCCGGAGGTTACCCGCGTCATCGGCAATCACGACAAGATGAAAGCCGAGACATGGAA ACCCGCAGACCTGCTCGGCGGGGAAGAGAAGATCCGCGTCAACGACATCATGAGCGTGCGCGAAACCGCCGCCCATCTGA TCGACGGCATGGAAGGCCGGGCGCGGGCCTATGTGCAGGTCCAGAACGGCTGCGACCATCGTTGCACCTTCTGCATCATT CCCTATGGCCGCGGAAACTCCCGCTCGGTTCCGGCAGGGGAAGTGGTGGCCCAGGTGCGCGCCCTCGCTGCCAGCGGGCA TTATGAGGTCGTGCTGACGGGCGTGGACCTCACCAGCTGGGGCGCAGACCTTCCAGGGACGCCCGAGCTCGGTAATCTCG TCCAGCGCATCCTGAAGCTTGTGCCCGAACTCCGCGCGCTGCGAATTTCCTCCATCGACGCGATCGAGATGGATGATGCC CTCATCGAAGCGCTCGCCGATCCGCGCGTGGCGCCGTATCTGCACCTCTCGCTGCAGCATGGCGATAATCTTATCCTCAA GCGGATGAAACGCCGCCATAGCCGCGATCAGGCCATTCAGCTTACAGAGCGTCTTCGCGCCATGCGGCCGGACATTGCTC TGGGGGCGGACATAATCGCCGGTTTCCCGACCGAGACCGAGGCGCACTTTGAAAACTCCCTCCGCCTCATTGATGAGTGC GGTCTCTCCTTCCTGCATGCCTTCCCCTACAGCCCGCGCCCCGGCACGCCGGCAGCCAAGATGCCCCAGCTGGCAAAGCC GCTGATCAAGGACCGCGCCGCGCGTTTGCGGGCAGCGGGCGAAGCCGCGCTCCTCCGGCATTTTGAACGCCATCTCGGTC AGGTGCGCCTGGCATTGATTGAACGCGATACCGCCGCCCGCCTACCCGATTTCACCCAGGTCAAACTCAGTCGCGCGGCA GGGGAGGGTGGACGGATGACGCCTGTGCAGATAACCGGCCATGACGGCAAGCAGCTTCTGGGAACACCCCTTTCATGA
Upstream 100 bases:
>100_bases GCACGGGCGCCTGCCAGGGTCCGGGCTGAGGCGTCCGGCTGAGGCAAAACAGGCGTATCCGCTTGCAATTGGGTCTCATC GGCGCGATCTGACGGGGCTT
Downstream 100 bases:
>100_bases TCCTCTGGTTCGGCAAGAAGAAGAAACTCGACGAGGCCAAAGCCGCCGGCGAGGTAATGAAAGCGCCGGAATTGAGCGCG GAAGAAATCGCCGCGCAGGA
Product: tRNA-i(6)A37 thiotransferase enzyme MiaB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 425; Mature: 424
Protein sequence:
>425_residues MADTAPPSSPTVITLGCRLNTYESEVMRRHAHAAGLGDAVIINTCAVTSEAVRGARQAIRRAARDNPGAPILVTGCAAQT DPEAFAAMPEVTRVIGNHDKMKAETWKPADLLGGEEKIRVNDIMSVRETAAHLIDGMEGRARAYVQVQNGCDHRCTFCII PYGRGNSRSVPAGEVVAQVRALAASGHYEVVLTGVDLTSWGADLPGTPELGNLVQRILKLVPELRALRISSIDAIEMDDA LIEALADPRVAPYLHLSLQHGDNLILKRMKRRHSRDQAIQLTERLRAMRPDIALGADIIAGFPTETEAHFENSLRLIDEC GLSFLHAFPYSPRPGTPAAKMPQLAKPLIKDRAARLRAAGEAALLRHFERHLGQVRLALIERDTAARLPDFTQVKLSRAA GEGGRMTPVQITGHDGKQLLGTPLS
Sequences:
>Translated_425_residues MADTAPPSSPTVITLGCRLNTYESEVMRRHAHAAGLGDAVIINTCAVTSEAVRGARQAIRRAARDNPGAPILVTGCAAQT DPEAFAAMPEVTRVIGNHDKMKAETWKPADLLGGEEKIRVNDIMSVRETAAHLIDGMEGRARAYVQVQNGCDHRCTFCII PYGRGNSRSVPAGEVVAQVRALAASGHYEVVLTGVDLTSWGADLPGTPELGNLVQRILKLVPELRALRISSIDAIEMDDA LIEALADPRVAPYLHLSLQHGDNLILKRMKRRHSRDQAIQLTERLRAMRPDIALGADIIAGFPTETEAHFENSLRLIDEC GLSFLHAFPYSPRPGTPAAKMPQLAKPLIKDRAARLRAAGEAALLRHFERHLGQVRLALIERDTAARLPDFTQVKLSRAA GEGGRMTPVQITGHDGKQLLGTPLS >Mature_424_residues ADTAPPSSPTVITLGCRLNTYESEVMRRHAHAAGLGDAVIINTCAVTSEAVRGARQAIRRAARDNPGAPILVTGCAAQTD PEAFAAMPEVTRVIGNHDKMKAETWKPADLLGGEEKIRVNDIMSVRETAAHLIDGMEGRARAYVQVQNGCDHRCTFCIIP YGRGNSRSVPAGEVVAQVRALAASGHYEVVLTGVDLTSWGADLPGTPELGNLVQRILKLVPELRALRISSIDAIEMDDAL IEALADPRVAPYLHLSLQHGDNLILKRMKRRHSRDQAIQLTERLRAMRPDIALGADIIAGFPTETEAHFENSLRLIDECG LSFLHAFPYSPRPGTPAAKMPQLAKPLIKDRAARLRAAGEAALLRHFERHLGQVRLALIERDTAARLPDFTQVKLSRAAG EGGRMTPVQITGHDGKQLLGTPLS
Specific function: Unknown
COG id: COG0621
COG function: function code J; 2-methylthioadenine synthetase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 MTTase N-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI93277076, Length=467, Percent_Identity=24.8394004282655, Blast_Score=144, Evalue=2e-34, Organism=Homo sapiens, GI28872782, Length=366, Percent_Identity=23.224043715847, Blast_Score=108, Evalue=1e-23, Organism=Homo sapiens, GI28872784, Length=366, Percent_Identity=23.224043715847, Blast_Score=108, Evalue=1e-23, Organism=Escherichia coli, GI1786882, Length=360, Percent_Identity=29.7222222222222, Blast_Score=156, Evalue=2e-39, Organism=Escherichia coli, GI1787057, Length=402, Percent_Identity=27.8606965174129, Blast_Score=151, Evalue=7e-38, Organism=Caenorhabditis elegans, GI17553146, Length=365, Percent_Identity=27.3972602739726, Blast_Score=137, Evalue=8e-33, Organism=Caenorhabditis elegans, GI71996771, Length=295, Percent_Identity=28.4745762711864, Blast_Score=123, Evalue=1e-28, Organism=Drosophila melanogaster, GI21356207, Length=420, Percent_Identity=29.2857142857143, Blast_Score=148, Evalue=7e-36, Organism=Drosophila melanogaster, GI19922432, Length=365, Percent_Identity=29.041095890411, Blast_Score=145, Evalue=5e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR020612 - InterPro: IPR013848 - InterPro: IPR006467 - InterPro: IPR007197 [H]
Pfam domain/function: PF04055 Radical_SAM; PF00919 UPF0004 [H]
EC number: NA
Molecular weight: Translated: 46083; Mature: 45951
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: PS01278 UPF0004
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADTAPPSSPTVITLGCRLNTYESEVMRRHAHAAGLGDAVIINTCAVTSEAVRGARQAIR CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHH RAARDNPGAPILVTGCAAQTDPEAFAAMPEVTRVIGNHDKMKAETWKPADLLGGEEKIRV HHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCEEEH NDIMSVRETAAHLIDGMEGRARAYVQVQNGCDHRCTFCIIPYGRGNSRSVPAGEVVAQVR HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH ALAASGHYEVVLTGVDLTSWGADLPGTPELGNLVQRILKLVPELRALRISSIDAIEMDDA HHHCCCCEEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH LIEALADPRVAPYLHLSLQHGDNLILKRMKRRHSRDQAIQLTERLRAMRPDIALGADIIA HHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHCCHHHC GFPTETEAHFENSLRLIDECGLSFLHAFPYSPRPGTPAAKMPQLAKPLIKDRAARLRAAG CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC EAALLRHFERHLGQVRLALIERDTAARLPDFTQVKLSRAAGEGGRMTPVQITGHDGKQLL HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHCC GTPLS CCCCC >Mature Secondary Structure ADTAPPSSPTVITLGCRLNTYESEVMRRHAHAAGLGDAVIINTCAVTSEAVRGARQAIR CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHH RAARDNPGAPILVTGCAAQTDPEAFAAMPEVTRVIGNHDKMKAETWKPADLLGGEEKIRV HHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCEEEH NDIMSVRETAAHLIDGMEGRARAYVQVQNGCDHRCTFCIIPYGRGNSRSVPAGEVVAQVR HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHH ALAASGHYEVVLTGVDLTSWGADLPGTPELGNLVQRILKLVPELRALRISSIDAIEMDDA HHHCCCCEEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH LIEALADPRVAPYLHLSLQHGDNLILKRMKRRHSRDQAIQLTERLRAMRPDIALGADIIA HHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHCCHHHC GFPTETEAHFENSLRLIDECGLSFLHAFPYSPRPGTPAAKMPQLAKPLIKDRAARLRAAG CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC EAALLRHFERHLGQVRLALIERDTAARLPDFTQVKLSRAAGEGGRMTPVQITGHDGKQLL HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHCC GTPLS CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]