Click here to switch to the map view.

The map label for this gene is focD [H]

Identifier: 114800318

GI number: 114800318

Start: 71056

End: 73308

Strand: Direct

Name: focD [H]

Synonym: HNE_0088

Alternate gene names: 114800318

Gene position: 71056-73308 (Clockwise)

Preceding gene: 114799312

Following gene: 114797879

Centisome position: 1.92

GC content: 63.69

Gene sequence:

>2253_bases
ATGGCGGCACGGGCGGCGCCTGAAACCGGGACCGCGCCTGCCGATGTCATGGCGGAAACCCTGTCTCTCCTGGTAGAGGC
GCGCATCAATGGCGCGCCGGTGGCGGGGCTTGTTGCGCTTGATCTGCTGGCGGACGGGTGCGTGCGGATCGAAACTGGTC
CGCTGCGAAATGCCGGACTCTATTCTGAGAATGCGCCGGCCGTTTGCCTCCAGTCCCTGGCGGGTATCGACTACAGTCTC
GATCAAGGTGCCGCGCAGCTCGATATTTATGCCGCCCGCGCCCCGCCGCCCCGGCGGGTTGTGTTTGATCGCCAGCAATT
TGCAAAGCCGCTGTCAGGTGTGATGGGCGGCTATGGCCTGTCGGCCCAGCGGGTTCATGACGGATCGGATGAACGCGTCA
ATGCGTTCGGAGACCTTTCCCTGACGCTGCATACCCCCCATGGCCGGCTGCAGAATGAGATGGTTGCCACGTATGATGAT
GGGGAAGGGCAGGCGCAACGTCTGCTGACGGTTTACGAGCGGGATTTTCCCGGCAGCTTTACCCGGCTCAGCGTTGGAGA
CAGTTTCACCCGCGCGCCGCGCTGGGGGCGCCTTACCGCCATTGCCGGTGTGCAGTATGGCACGGACTTCTCGATGGACC
CCAACGACAGCTGGCGCCCTTACCGGACTTTCCAGGCATTGCTGCGCCAGCAGTCGGAGGTCGATGTCCGGGTCAATGGC
GTCGTGCGGCAAAAACAGAGTGTCGCGCCCGGCTACACTGATTTTGAGATCAGCCCGGAAGCCGGCCTCAATGAAGTCGA
AGTCACCATCCAGGAAGCCAATGGGCTCAGCCGCATTGAGGACTACAGCTTCTTTTCCTCTCCGGAGGTTCTGGCCGCAG
GGGTTACAGACTATTCGGTCAGCCTCGGTGTGCCACGGCGGTTCACCGGAATCTCCGCCACATATGACGACCAGATTGTT
GCCAACGGTCTGGTCCGGCGCGGCCTGAGTGACCGGCTAACGGCGGAAGCCTACTCCGAACTTGGTCATGGCGGCGGGCT
CTTGGGCGGGGGAAGCCAGATTACAGCCGGGAAGGTTGGTGTACTGAGCCTGTCAGCCGGGCTCAGCCGGAATGAGGCAG
GCCATACCGGCCACATCGTCTCAGCGGGGTTTGAACGTAATACGCGCCGCGGCTCGTTTCAGCTGCAGGCGCGCTTTGCC
GATCCGCAGTATTCTGATGCGGCCTCTGCCTTGGGCGCCCCGTTCCCAGATCGCTCGATCCGCGCCAGTGGTGGCATCTA
TACGCCGGCCGGTTCTCTGCGCGCGTCCTTTGTCGATGAAGAAGACGGCGTTCTCAGTGATCGGCGGTTCCTCTCTGTCG
GATGGGAAAAGCCGCTGCGGGGAGACCGCTTCTCCTTCTCGGCCACGGCGTATCAGGACTTCGCCCGCAGCGAGACCGGA
TTTGCCATCGCGCTGCGGGCAAGCTTCGGTGCCTACAATGCCGGTAGCAGCTATCAGTCTGCCCGCGGGCAGGAGGCGTC
CAGCGTGCAGGTCAGCCGGTCGCGCATGCCGGGGGAGCGCGTCCAATGGGCAATGCGCGCCGCAGATGGCGGGGCAGGGG
CCGTTTACCAGGGCGACCTCGCCGCCGATCTTGGTGTCGCCGATCTCGTGCTTAATGGCGGGGTATATGGCGAAACCAAC
CAGCTCATGGCGGGGGTGCGCGGCGGATTTGCCGTCACGCCGGGCGCGCGGTCGCTGCATCGCCAGACAACTGGGGCCAG
CGCAATCGTGCGGATACCGGAGCTCAAAGGTCTGCCAATTTACAAGGACAACCGCATTGTCGCCGTCACCGGTCAGAACG
GCATCGCCGTGATCCCGGATGTGCGCCCCTATGAGGTCAATACGCTCAGCCTGCGCCCCGAAGATGTCCCGCTGGAATAT
GAGGTGAGCGACTTCAACGCCCGATTTGTTCCCCGGCGCGGCGTGTCGGAGGTTCGCTTCGATGTTCGCCGCGAAACGGT
CCTTGCCTTTACCGTAGTGGCGGAAGGGGGCGCCCCCCTGGCGCCCGGCAGCCGGGTGGAGCTCCTTCGCTCGGGGCTTG
TCTGCCCTGTCGGGCTGGAGGGGCGCGTTTACTGTTCGGTGGCAGAAGAGAGCGACATTGTTGCCGTCACCACTCCGGCG
GGAAGGTTCATTCAGCCGGTTGCCGCTGTGCGGAGCAGTGGAGAAATGCAGCTGCGGCCTGAAGGCCGGGTCGAAATGGC
AGGAATTGACTGA

Upstream 100 bases:

>100_bases
CTGTAGGCGGCGCGTCCTATTCAGCGCTGCTCAGTCCAGAGAGGTGAACCGCGCGCAGAGATCCGGTCTCGCGGCGGTCT
TTCTGTTGATGAGCGCTGCG

Downstream 100 bases:

>100_bases
ATGTGGCGCCTGATTGTCCTGGTTTTGTCCTTATTTGTCCTGGTTTGTCCGGCTTTGGCGCAATCGTGCACGGTTTCGTC
CACCCCGTTGAGCTTTACGC

Product: fimbrial usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 750; Mature: 749

Protein sequence:

>750_residues
MAARAAPETGTAPADVMAETLSLLVEARINGAPVAGLVALDLLADGCVRIETGPLRNAGLYSENAPAVCLQSLAGIDYSL
DQGAAQLDIYAARAPPPRRVVFDRQQFAKPLSGVMGGYGLSAQRVHDGSDERVNAFGDLSLTLHTPHGRLQNEMVATYDD
GEGQAQRLLTVYERDFPGSFTRLSVGDSFTRAPRWGRLTAIAGVQYGTDFSMDPNDSWRPYRTFQALLRQQSEVDVRVNG
VVRQKQSVAPGYTDFEISPEAGLNEVEVTIQEANGLSRIEDYSFFSSPEVLAAGVTDYSVSLGVPRRFTGISATYDDQIV
ANGLVRRGLSDRLTAEAYSELGHGGGLLGGGSQITAGKVGVLSLSAGLSRNEAGHTGHIVSAGFERNTRRGSFQLQARFA
DPQYSDAASALGAPFPDRSIRASGGIYTPAGSLRASFVDEEDGVLSDRRFLSVGWEKPLRGDRFSFSATAYQDFARSETG
FAIALRASFGAYNAGSSYQSARGQEASSVQVSRSRMPGERVQWAMRAADGGAGAVYQGDLAADLGVADLVLNGGVYGETN
QLMAGVRGGFAVTPGARSLHRQTTGASAIVRIPELKGLPIYKDNRIVAVTGQNGIAVIPDVRPYEVNTLSLRPEDVPLEY
EVSDFNARFVPRRGVSEVRFDVRRETVLAFTVVAEGGAPLAPGSRVELLRSGLVCPVGLEGRVYCSVAEESDIVAVTTPA
GRFIQPVAAVRSSGEMQLRPEGRVEMAGID

Sequences:

>Translated_750_residues
MAARAAPETGTAPADVMAETLSLLVEARINGAPVAGLVALDLLADGCVRIETGPLRNAGLYSENAPAVCLQSLAGIDYSL
DQGAAQLDIYAARAPPPRRVVFDRQQFAKPLSGVMGGYGLSAQRVHDGSDERVNAFGDLSLTLHTPHGRLQNEMVATYDD
GEGQAQRLLTVYERDFPGSFTRLSVGDSFTRAPRWGRLTAIAGVQYGTDFSMDPNDSWRPYRTFQALLRQQSEVDVRVNG
VVRQKQSVAPGYTDFEISPEAGLNEVEVTIQEANGLSRIEDYSFFSSPEVLAAGVTDYSVSLGVPRRFTGISATYDDQIV
ANGLVRRGLSDRLTAEAYSELGHGGGLLGGGSQITAGKVGVLSLSAGLSRNEAGHTGHIVSAGFERNTRRGSFQLQARFA
DPQYSDAASALGAPFPDRSIRASGGIYTPAGSLRASFVDEEDGVLSDRRFLSVGWEKPLRGDRFSFSATAYQDFARSETG
FAIALRASFGAYNAGSSYQSARGQEASSVQVSRSRMPGERVQWAMRAADGGAGAVYQGDLAADLGVADLVLNGGVYGETN
QLMAGVRGGFAVTPGARSLHRQTTGASAIVRIPELKGLPIYKDNRIVAVTGQNGIAVIPDVRPYEVNTLSLRPEDVPLEY
EVSDFNARFVPRRGVSEVRFDVRRETVLAFTVVAEGGAPLAPGSRVELLRSGLVCPVGLEGRVYCSVAEESDIVAVTTPA
GRFIQPVAAVRSSGEMQLRPEGRVEMAGID
>Mature_749_residues
AARAAPETGTAPADVMAETLSLLVEARINGAPVAGLVALDLLADGCVRIETGPLRNAGLYSENAPAVCLQSLAGIDYSLD
QGAAQLDIYAARAPPPRRVVFDRQQFAKPLSGVMGGYGLSAQRVHDGSDERVNAFGDLSLTLHTPHGRLQNEMVATYDDG
EGQAQRLLTVYERDFPGSFTRLSVGDSFTRAPRWGRLTAIAGVQYGTDFSMDPNDSWRPYRTFQALLRQQSEVDVRVNGV
VRQKQSVAPGYTDFEISPEAGLNEVEVTIQEANGLSRIEDYSFFSSPEVLAAGVTDYSVSLGVPRRFTGISATYDDQIVA
NGLVRRGLSDRLTAEAYSELGHGGGLLGGGSQITAGKVGVLSLSAGLSRNEAGHTGHIVSAGFERNTRRGSFQLQARFAD
PQYSDAASALGAPFPDRSIRASGGIYTPAGSLRASFVDEEDGVLSDRRFLSVGWEKPLRGDRFSFSATAYQDFARSETGF
AIALRASFGAYNAGSSYQSARGQEASSVQVSRSRMPGERVQWAMRAADGGAGAVYQGDLAADLGVADLVLNGGVYGETNQ
LMAGVRGGFAVTPGARSLHRQTTGASAIVRIPELKGLPIYKDNRIVAVTGQNGIAVIPDVRPYEVNTLSLRPEDVPLEYE
VSDFNARFVPRRGVSEVRFDVRRETVLAFTVVAEGGAPLAPGSRVELLRSGLVCPVGLEGRVYCSVAEESDIVAVTTPAG
RFIQPVAAVRSSGEMQLRPEGRVEMAGID

Specific function: Involved in the export and assembly of the F1C fimbriae subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 79908; Mature: 79777

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAARAAPETGTAPADVMAETLSLLVEARINGAPVAGLVALDLLADGCVRIETGPLRNAGL
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
YSENAPAVCLQSLAGIDYSLDQGAAQLDIYAARAPPPRRVVFDRQQFAKPLSGVMGGYGL
CCCCCHHHHHHHHHCCCEECCCCCEEEEEEEECCCCCCCEEECHHHHHHHHHHHHCCCCC
SAQRVHDGSDERVNAFGDLSLTLHTPHGRLQNEMVATYDDGEGQAQRLLTVYERDFPGSF
CHHEECCCCCCCEEEEEEEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCE
TRLSVGDSFTRAPRWGRLTAIAGVQYGTDFSMDPNDSWRPYRTFQALLRQQSEVDVRVNG
EEEECCCCHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE
VVRQKQSVAPGYTDFEISPEAGLNEVEVTIQEANGLSRIEDYSFFSSPEVLAAGVTDYSV
EEEHHHHCCCCCCCEEECCCCCCCEEEEEEECCCCCCHHHHCCCCCCCCEEEECCCCEEE
SLGVPRRFTGISATYDDQIVANGLVRRGLSDRLTAEAYSELGHGGGLLGGGSQITAGKVG
ECCCCCEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCEE
VLSLSAGLSRNEAGHTGHIVSAGFERNTRRGSFQLQARFADPQYSDAASALGAPFPDRSI
EEEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCCCCE
RASGGIYTPAGSLRASFVDEEDGVLSDRRFLSVGWEKPLRGDRFSFSATAYQDFARSETG
ECCCCEECCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEHHHHHHHHCCCCC
FAIALRASFGAYNAGSSYQSARGQEASSVQVSRSRMPGERVQWAMRAADGGAGAVYQGDL
EEEEEEECCCCCCCCCCHHHHCCCCCCCEEHHHHCCCHHHHHHHHHHCCCCCCCEEECCC
AADLGVADLVLNGGVYGETNQLMAGVRGGFAVTPGARSLHRQTTGASAIVRIPELKGLPI
HHHCCHHHHEECCCCCCCHHHHHHHCCCCEEECCCHHHHHHHCCCCEEEEECCCCCCCCE
YKDNRIVAVTGQNGIAVIPDVRPYEVNTLSLRPEDVPLEYEVSDFNARFVPRRGVSEVRF
EECCEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCEEEEECCCCEEECCCCCHHHHHH
DVRRETVLAFTVVAEGGAPLAPGSRVELLRSGLVCPVGLEGRVYCSVAEESDIVAVTTPA
HHHHCEEEEEEEEECCCCCCCCCHHHHHHHCCCEEEECCCCEEEEEECCCCCEEEEECCC
GRFIQPVAAVRSSGEMQLRPEGRVEMAGID
CHHHHHHHHHHCCCCEEECCCCCEEEECCC
>Mature Secondary Structure 
AARAAPETGTAPADVMAETLSLLVEARINGAPVAGLVALDLLADGCVRIETGPLRNAGL
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
YSENAPAVCLQSLAGIDYSLDQGAAQLDIYAARAPPPRRVVFDRQQFAKPLSGVMGGYGL
CCCCCHHHHHHHHHCCCEECCCCCEEEEEEEECCCCCCCEEECHHHHHHHHHHHHCCCCC
SAQRVHDGSDERVNAFGDLSLTLHTPHGRLQNEMVATYDDGEGQAQRLLTVYERDFPGSF
CHHEECCCCCCCEEEEEEEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCE
TRLSVGDSFTRAPRWGRLTAIAGVQYGTDFSMDPNDSWRPYRTFQALLRQQSEVDVRVNG
EEEECCCCHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE
VVRQKQSVAPGYTDFEISPEAGLNEVEVTIQEANGLSRIEDYSFFSSPEVLAAGVTDYSV
EEEHHHHCCCCCCCEEECCCCCCCEEEEEEECCCCCCHHHHCCCCCCCCEEEECCCCEEE
SLGVPRRFTGISATYDDQIVANGLVRRGLSDRLTAEAYSELGHGGGLLGGGSQITAGKVG
ECCCCCEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCEE
VLSLSAGLSRNEAGHTGHIVSAGFERNTRRGSFQLQARFADPQYSDAASALGAPFPDRSI
EEEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCCCCE
RASGGIYTPAGSLRASFVDEEDGVLSDRRFLSVGWEKPLRGDRFSFSATAYQDFARSETG
ECCCCEECCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEHHHHHHHHCCCCC
FAIALRASFGAYNAGSSYQSARGQEASSVQVSRSRMPGERVQWAMRAADGGAGAVYQGDL
EEEEEEECCCCCCCCCCHHHHCCCCCCCEEHHHHCCCHHHHHHHHHHCCCCCCCEEECCC
AADLGVADLVLNGGVYGETNQLMAGVRGGFAVTPGARSLHRQTTGASAIVRIPELKGLPI
HHHCCHHHHEECCCCCCCHHHHHHHCCCCEEECCCHHHHHHHCCCCEEEEECCCCCCCCE
YKDNRIVAVTGQNGIAVIPDVRPYEVNTLSLRPEDVPLEYEVSDFNARFVPRRGVSEVRF
EECCEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCEEEEECCCCEEECCCCCHHHHHH
DVRRETVLAFTVVAEGGAPLAPGSRVELLRSGLVCPVGLEGRVYCSVAEESDIVAVTTPA
HHHHCEEEEEEEEECCCCCCCCCHHHHHHHCCCEEEECCCCEEEEEECCCCCEEEEECCC
GRFIQPVAAVRSSGEMQLRPEGRVEMAGID
CHHHHHHHHHHCCCCEEECCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7836295 [H]