| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is purK [H]
Identifier: 114800267
GI number: 114800267
Start: 3641490
End: 3642569
Strand: Direct
Name: purK [H]
Synonym: HNE_3507
Alternate gene names: 114800267
Gene position: 3641490-3642569 (Clockwise)
Preceding gene: 114798773
Following gene: 114797561
Centisome position: 98.29
GC content: 64.17
Gene sequence:
>1080_bases ATGAGCCCGCTTCGCCCCGGCGCGACGATCGGGATATTGGGCGGCGGGCAGCTTGGCCGGATGCTGGCGAGCGCGGCCGC GCAGCTTGGCTTTGATGTGCTGATCTATTCGCCCGAAGATGATCCGCCGGCAGGTCGTGTCGCGGCGGGGGCCTTTCAGG CCGACTGGGACGACGCCGAGGCGCTGACCGAGTTTGCCCAGGCCTGCGATGTGATCACGCTGGAATTTGAAAATGTGGCG GTCGCGAGCGTTGAGGTGATCGAGAAGACCGGAAAGCGCGTGCTGCCGGGGGCGAAGTCTCTCTCCGTGTCTCAGGACCG GATGACCGAGAAGACCTTTCTCAACGCGCACGGCATCCCCACAGCGCCGTTCCGCGAGATTAATTCGGCGGCTGATATTT CCGCCGCTTTGGCGAGCCTCGGCGGCAAAGGCGTGTTGAAGACGCGCCGCGAAGGCTATGACGGCAAGGGGCAGGCCTGG GTTTACGATGCGGCCGAAGCCGAAAAGGCCTGGGCGAAGATTGGCGCGATGCCGGCGATCCTGGAAGGCGCCATCGCATT TGAGTGCGAAATCTCGGTGCTGGTGGCGCGCAGCGTTACAGGCGAAACGACCAGCTGGGCGCCGCCGCGCAACAGCCATG AGAACGGGATTCTCGCGCGCTCGGTTGTGCCGTCTGGCCTCAGCAAAGCGGTGGAAGACGAAGCGCGCGCCAAGGCGATG CATCTGGCCGATGAGCTGGGCCATGTGGGCGTTCTGGCGCTGGAGTTTTTTGTTTTGCCGGATGGCACGCTGCTGGCCAA CGAATTTGCGCCCCGCGTGCACAATTCCGGCCATTGGACGCCTGAAGCCTGCCAGACCGGGCAGTTCGAGCAGCATATCC GCTGCGTGGCCGGTTGGCCGCTGGGGGATACGCACCGGCTGTTTGATGCCGAGATGGCGAACCTGATCGGTGACGAGGGG CTGGTTGACCCGGCAACGCTCAAGGCGAATGATGTTTTGACCCTTTACGGCAAGCGCGAAGCCCGGCCCGGACGCAAGAT GGGCCATATCACGCGCCGCCTTGGCCCACGAAAGGACTAG
Upstream 100 bases:
>100_bases TGGCGGCCTCGATCATTGCGCTGCAGGACGACGCGGTGGCCGCAAAGCTGGACGCGTTCCGCACGGCGCAGACCGAGAGC GTGAAAGAGGTTCCCGAGGA
Downstream 100 bases:
>100_bases ACCCATGCGCCTTCCCGTTTCCACCTGGCCCGACATTGAAGCCTGGCTGACCAAATCAAAGACCATCGTGATCCCCATCG GCTCTTTCGAGCAGCATGGA
Product: phosphoribosylaminoimidazole carboxylase, ATPase subunit
Products: NA
Alternate protein names: N5-CAIR synthase; 5-(carboxyamino)imidazole ribonucleotide synthetase [H]
Number of amino acids: Translated: 359; Mature: 358
Protein sequence:
>359_residues MSPLRPGATIGILGGGQLGRMLASAAAQLGFDVLIYSPEDDPPAGRVAAGAFQADWDDAEALTEFAQACDVITLEFENVA VASVEVIEKTGKRVLPGAKSLSVSQDRMTEKTFLNAHGIPTAPFREINSAADISAALASLGGKGVLKTRREGYDGKGQAW VYDAAEAEKAWAKIGAMPAILEGAIAFECEISVLVARSVTGETTSWAPPRNSHENGILARSVVPSGLSKAVEDEARAKAM HLADELGHVGVLALEFFVLPDGTLLANEFAPRVHNSGHWTPEACQTGQFEQHIRCVAGWPLGDTHRLFDAEMANLIGDEG LVDPATLKANDVLTLYGKREARPGRKMGHITRRLGPRKD
Sequences:
>Translated_359_residues MSPLRPGATIGILGGGQLGRMLASAAAQLGFDVLIYSPEDDPPAGRVAAGAFQADWDDAEALTEFAQACDVITLEFENVA VASVEVIEKTGKRVLPGAKSLSVSQDRMTEKTFLNAHGIPTAPFREINSAADISAALASLGGKGVLKTRREGYDGKGQAW VYDAAEAEKAWAKIGAMPAILEGAIAFECEISVLVARSVTGETTSWAPPRNSHENGILARSVVPSGLSKAVEDEARAKAM HLADELGHVGVLALEFFVLPDGTLLANEFAPRVHNSGHWTPEACQTGQFEQHIRCVAGWPLGDTHRLFDAEMANLIGDEG LVDPATLKANDVLTLYGKREARPGRKMGHITRRLGPRKD >Mature_358_residues SPLRPGATIGILGGGQLGRMLASAAAQLGFDVLIYSPEDDPPAGRVAAGAFQADWDDAEALTEFAQACDVITLEFENVAV ASVEVIEKTGKRVLPGAKSLSVSQDRMTEKTFLNAHGIPTAPFREINSAADISAALASLGGKGVLKTRREGYDGKGQAWV YDAAEAEKAWAKIGAMPAILEGAIAFECEISVLVARSVTGETTSWAPPRNSHENGILARSVVPSGLSKAVEDEARAKAMH LADELGHVGVLALEFFVLPDGTLLANEFAPRVHNSGHWTPEACQTGQFEQHIRCVAGWPLGDTHRLFDAEMANLIGDEGL VDPATLKANDVLTLYGKREARPGRKMGHITRRLGPRKD
Specific function: Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR) [H]
COG id: COG0026
COG function: function code F; Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-grasp domain [H]
Homologues:
Organism=Escherichia coli, GI1786733, Length=342, Percent_Identity=34.2105263157895, Blast_Score=156, Evalue=2e-39, Organism=Escherichia coli, GI1788155, Length=363, Percent_Identity=26.7217630853994, Blast_Score=104, Evalue=9e-24, Organism=Saccharomyces cerevisiae, GI6324702, Length=365, Percent_Identity=32.0547945205479, Blast_Score=172, Evalue=8e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005875 - InterPro: IPR011761 - InterPro: IPR003135 - InterPro: IPR013816 - InterPro: IPR013817 - InterPro: IPR016185 - InterPro: IPR011054 [H]
Pfam domain/function: PF02222 ATP-grasp [H]
EC number: =6.3.4.18 [H]
Molecular weight: Translated: 38197; Mature: 38065
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: PS50975 ATP_GRASP ; PS00065 D_2_HYDROXYACID_DH_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPLRPGATIGILGGGQLGRMLASAAAQLGFDVLIYSPEDDPPAGRVAAGAFQADWDDAE CCCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEECCCCCCCCCHHH ALTEFAQACDVITLEFENVAVASVEVIEKTGKRVLPGAKSLSVSQDRMTEKTFLNAHGIP HHHHHHHHCCEEEEEECCEEHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHCCCCCC TAPFREINSAADISAALASLGGKGVLKTRREGYDGKGQAWVYDAAEAEKAWAKIGAMPAI CCCHHHHCCHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEEEECHHHHHHHHHHCCCHHH LEGAIAFECEISVLVARSVTGETTSWAPPRNSHENGILARSVVPSGLSKAVEDEARAKAM HCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEHHHCCHHHHHHHHHHHHHHHH HLADELGHVGVLALEFFVLPDGTLLANEFAPRVHNSGHWTPEACQTGQFEQHIRCVAGWP HHHHHHCCCEEEEEEEEECCCCCEEHHHHCCCCCCCCCCCHHHHCCCCHHHHEEEEECCC LGDTHRLFDAEMANLIGDEGLVDPATLKANDVLTLYGKREARPGRKMGHITRRLGPRKD CCCCHHHHHHHHHHHHCCCCCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHCCCCCC >Mature Secondary Structure SPLRPGATIGILGGGQLGRMLASAAAQLGFDVLIYSPEDDPPAGRVAAGAFQADWDDAE CCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEECCCCCCCCCHHH ALTEFAQACDVITLEFENVAVASVEVIEKTGKRVLPGAKSLSVSQDRMTEKTFLNAHGIP HHHHHHHHCCEEEEEECCEEHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHCCCCCC TAPFREINSAADISAALASLGGKGVLKTRREGYDGKGQAWVYDAAEAEKAWAKIGAMPAI CCCHHHHCCHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEEEEECHHHHHHHHHHCCCHHH LEGAIAFECEISVLVARSVTGETTSWAPPRNSHENGILARSVVPSGLSKAVEDEARAKAM HCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEHHHCCHHHHHHHHHHHHHHHH HLADELGHVGVLALEFFVLPDGTLLANEFAPRVHNSGHWTPEACQTGQFEQHIRCVAGWP HHHHHHCCCEEEEEEEEECCCCCEEHHHHCCCCCCCCCCCHHHHCCCCHHHHEEEEECCC LGDTHRLFDAEMANLIGDEGLVDPATLKANDVLTLYGKREARPGRKMGHITRRLGPRKD CCCCHHHHHHHHHHHHCCCCCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11756688 [H]