Click here to switch to the map view.

The map label for this gene is phaD [C]

Identifier: 114799904

GI number: 114799904

Start: 2102441

End: 2103073

Strand: Direct

Name: phaD [C]

Synonym: HNE_2025

Alternate gene names: 114799904

Gene position: 2102441-2103073 (Clockwise)

Preceding gene: 114797277

Following gene: 114797860

Centisome position: 56.75

GC content: 57.19

Gene sequence:

>633_bases
ATGAAAACGCGCGACCGTATCCTTCAGGTGAGCCTGCTTCTCTTCAATGAAGAGGGCGAGGCGCAGCTTTCGTCTGTGGA
TGTGGCCAACGCGCTCGAGATCAGTCCGGGTAACCTCTATTATCACTTCAAGGGCAAGGACGCGATTATCCGCGCCCTTT
ACGAGCGGTTTGAAGAGGAGATGCGCGTCATCCTGCGCGGCTCCAGCGGGGGCGTTGCCTCGATTGAGGACAACTGGGTC
TACATCTACATCCTGCTGGAAGAGATATACGACTTCCGCTTCTTCTACCGCGACCTTGCCGGGCTGATTGCTCGTTACCC
CGATCTGGCTGGCCGCTTTCGCGCGCTGATCGCCGAAAAACGGCAGACTATCTTACGCATCCTGGATGATCTGGCGCGGC
TGGACGTGATCGATATAGATCCGCGCCTGATGCCGCCCCTGACCGATCAGATCATCACCACACTGACCTTCTGGCTGGCG
GGGGACAGTCTGACCCGGGAAAGCCATGATGGCCCTGCCCTGATCCATAAAACCGTATTCCAGGTGATGTGTCTGATCGT
GCCGTATATGGGCAAGGACGGACATGGCGCGCTAAGCGGCATGATCCGCCACTTCAAGGAAACGCAATCTTGA

Upstream 100 bases:

>100_bases
TTAACCATGATCCCTTTCTTTTCCTGAAAGAGAACATGACAAAGTTTATGACAAAATTCGTTCCACAGTCAGTTTTCTCT
GTCAAACTACAGTTGTGGCC

Downstream 100 bases:

>100_bases
AAAGGACGGTTTGAGAAGAGCGGGAAGCCGTTCTGGCTCCCCGCCCCGTCTCGGAACTGGCTTTAGCTCGCGAGTTTCTT
CGCTTGCTTGGCCCACTCGT

Product: transcriptional regulator PhaD

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator PhaD; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; TetR Family Regulatory Protein; Transcriptional Reguator TetR Family; HTH-Type Transcriptional Regulator TetR-Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Tetr Family; Transcriptional Regulator Transcription Regulator Protein; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MKTRDRILQVSLLLFNEEGEAQLSSVDVANALEISPGNLYYHFKGKDAIIRALYERFEEEMRVILRGSSGGVASIEDNWV
YIYILLEEIYDFRFFYRDLAGLIARYPDLAGRFRALIAEKRQTILRILDDLARLDVIDIDPRLMPPLTDQIITTLTFWLA
GDSLTRESHDGPALIHKTVFQVMCLIVPYMGKDGHGALSGMIRHFKETQS

Sequences:

>Translated_210_residues
MKTRDRILQVSLLLFNEEGEAQLSSVDVANALEISPGNLYYHFKGKDAIIRALYERFEEEMRVILRGSSGGVASIEDNWV
YIYILLEEIYDFRFFYRDLAGLIARYPDLAGRFRALIAEKRQTILRILDDLARLDVIDIDPRLMPPLTDQIITTLTFWLA
GDSLTRESHDGPALIHKTVFQVMCLIVPYMGKDGHGALSGMIRHFKETQS
>Mature_210_residues
MKTRDRILQVSLLLFNEEGEAQLSSVDVANALEISPGNLYYHFKGKDAIIRALYERFEEEMRVILRGSSGGVASIEDNWV
YIYILLEEIYDFRFFYRDLAGLIARYPDLAGRFRALIAEKRQTILRILDDLARLDVIDIDPRLMPPLTDQIITTLTFWLA
GDSLTRESHDGPALIHKTVFQVMCLIVPYMGKDGHGALSGMIRHFKETQS

Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24056; Mature: 24056

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTRDRILQVSLLLFNEEGEAQLSSVDVANALEISPGNLYYHFKGKDAIIRALYERFEEE
CCCHHHHHHHHHEEECCCCCCHHHHCCHHHEEEECCCCEEEEECCHHHHHHHHHHHHHHH
MRVILRGSSGGVASIEDNWVYIYILLEEIYDFRFFYRDLAGLIARYPDLAGRFRALIAEK
HHHEEECCCCCEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
RQTILRILDDLARLDVIDIDPRLMPPLTDQIITTLTFWLAGDSLTRESHDGPALIHKTVF
HHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
QVMCLIVPYMGKDGHGALSGMIRHFKETQS
HHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTRDRILQVSLLLFNEEGEAQLSSVDVANALEISPGNLYYHFKGKDAIIRALYERFEEE
CCCHHHHHHHHHEEECCCCCCHHHHCCHHHEEEECCCCEEEEECCHHHHHHHHHHHHHHH
MRVILRGSSGGVASIEDNWVYIYILLEEIYDFRFFYRDLAGLIARYPDLAGRFRALIAEK
HHHEEECCCCCEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
RQTILRILDDLARLDVIDIDPRLMPPLTDQIITTLTFWLAGDSLTRESHDGPALIHKTVF
HHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
QVMCLIVPYMGKDGHGALSGMIRHFKETQS
HHHHHHHHCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA