| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is piv [H]
Identifier: 114799815
GI number: 114799815
Start: 3276686
End: 3277624
Strand: Direct
Name: piv [H]
Synonym: HNE_3101
Alternate gene names: 114799815
Gene position: 3276686-3277624 (Clockwise)
Preceding gene: 114800537
Following gene: 114800059
Centisome position: 88.44
GC content: 63.47
Gene sequence:
>939_bases ATGACACTGATTACCATCGGCGTGGATGTTTCAAAAGACACTCTTGATGTCCACCTTCATCCTGACGGGTTGCACCGTCA GTTCACAAACGATGCCGCCGGCTATCGCACGGTCCTCGGCTGGGTCGCGGGCCGGCCGGTCGCCCGCCTCGTCTTTGAGG CAAGCGGAGCCTACCACCGAGCCTTTGAGCGCGCGATGGGCGAGGCAGGCCTTGCTCTGTGCAAGGTCAATCCGGCCCGG GCCCGGAGGTTTGCAGAGGCAATTGGCCAGAGCGCCAAGACTGACCGGATCGACGCCGCCATGCTGGCCCGGATGGGGGC TGTTCTGGAGCCAGCCGCGCGCGCCGCGCCGTCAAAAACAGCGAGTGATCTCAAAGAGTTGCACATGATGCGAGCGGCCC TCGTCAAGGACAGGACGGCGGCGAAGAACCGCGCCGGAACGCTCACCCTGCCGCTTTTGAAACGCCAGTTGCGCCAGAGG CTGGCAGCCATTGACCGCCAGATCACACAGATCGAGCAGGCCATGCAGGCGCTCATCGAGGCTGACCCCGAGCTTGCCCG CAAGCGGGACATCCTCATCTCGATCCCCGGTATCGCCGAACGCTCTGCCTTTGCCCTCCTGACCGGCATGCCGGAGCTGG GCGACCTCGGTAACCCAGCCGCCAGCGCCCTCTCGGGAACCGCGCCGCGAACCCGCCAGTCAGGCAAGTGGACCGGCAAG GCGTTCGTGCAGGGCGGCCGCGCCCATGTCCGGCGTTCACTCTATATGCCAGCCCTCGCCGCCGCCCGGTTCAACCCCGA CCTCAATCATACCTACAGGCATCTTACCGGCCGGGGAAAGCCGCCAAAACTTGCCCTCACCGCCATCATGCGAAAGCTTA TCATCCTCGCAAACACACTCATCCGAGAAAATCGGAAATGGACACCAAAACCCAATTGA
Upstream 100 bases:
>100_bases GCCTGGGCGCCGTTCCTGAGTGAGGTCGCCCTCGTCTTTCCCATCGGCCTGAACGGATACAGGGGCTTTGAGGCCCGCAT GACAAGCAGAGGCAGGAAAG
Downstream 100 bases:
>100_bases CCAACACGGATACTCAGGATGAGCCCTTCGAGAGGTAGGGAGATGGGCACTCAGATGCGCGTTGCGCATCGAGTGTGACG AGGACGAAGGATTTGGAATG
Product: ISHne5, transposase
Products: NA
Alternate protein names: PIVML [H]
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MTLITIGVDVSKDTLDVHLHPDGLHRQFTNDAAGYRTVLGWVAGRPVARLVFEASGAYHRAFERAMGEAGLALCKVNPAR ARRFAEAIGQSAKTDRIDAAMLARMGAVLEPAARAAPSKTASDLKELHMMRAALVKDRTAAKNRAGTLTLPLLKRQLRQR LAAIDRQITQIEQAMQALIEADPELARKRDILISIPGIAERSAFALLTGMPELGDLGNPAASALSGTAPRTRQSGKWTGK AFVQGGRAHVRRSLYMPALAAARFNPDLNHTYRHLTGRGKPPKLALTAIMRKLIILANTLIRENRKWTPKPN
Sequences:
>Translated_312_residues MTLITIGVDVSKDTLDVHLHPDGLHRQFTNDAAGYRTVLGWVAGRPVARLVFEASGAYHRAFERAMGEAGLALCKVNPAR ARRFAEAIGQSAKTDRIDAAMLARMGAVLEPAARAAPSKTASDLKELHMMRAALVKDRTAAKNRAGTLTLPLLKRQLRQR LAAIDRQITQIEQAMQALIEADPELARKRDILISIPGIAERSAFALLTGMPELGDLGNPAASALSGTAPRTRQSGKWTGK AFVQGGRAHVRRSLYMPALAAARFNPDLNHTYRHLTGRGKPPKLALTAIMRKLIILANTLIRENRKWTPKPN >Mature_311_residues TLITIGVDVSKDTLDVHLHPDGLHRQFTNDAAGYRTVLGWVAGRPVARLVFEASGAYHRAFERAMGEAGLALCKVNPARA RRFAEAIGQSAKTDRIDAAMLARMGAVLEPAARAAPSKTASDLKELHMMRAALVKDRTAAKNRAGTLTLPLLKRQLRQRL AAIDRQITQIEQAMQALIEADPELARKRDILISIPGIAERSAFALLTGMPELGDLGNPAASALSGTAPRTRQSGKWTGKA FVQGGRAHVRRSLYMPALAAARFNPDLNHTYRHLTGRGKPPKLALTAIMRKLIILANTLIRENRKWTPKPN
Specific function: May be the site-specific invertase required for pilin gene inversion. Moraxella can express either a Q or I pilin; the inversion of 2 kb of DNA determines which pilin is expressed [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003346 - InterPro: IPR002525 [H]
Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]
EC number: NA
Molecular weight: Translated: 34031; Mature: 33900
Theoretical pI: Translated: 11.57; Mature: 11.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLITIGVDVSKDTLDVHLHPDGLHRQFTNDAAGYRTVLGWVAGRPVARLVFEASGAYHR CEEEEEEEECCCCEEEEEECCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHH AFERAMGEAGLALCKVNPARARRFAEAIGQSAKTDRIDAAMLARMGAVLEPAARAAPSKT HHHHHHHHCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHCCCCHH ASDLKELHMMRAALVKDRTAAKNRAGTLTLPLLKRQLRQRLAAIDRQITQIEQAMQALIE HHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADPELARKRDILISIPGIAERSAFALLTGMPELGDLGNPAASALSGTAPRTRQSGKWTGK CCHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHH AFVQGGRAHVRRSLYMPALAAARFNPDLNHTYRHLTGRGKPPKLALTAIMRKLIILANTL HHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH IRENRKWTPKPN HHCCCCCCCCCC >Mature Secondary Structure TLITIGVDVSKDTLDVHLHPDGLHRQFTNDAAGYRTVLGWVAGRPVARLVFEASGAYHR EEEEEEEECCCCEEEEEECCCHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHH AFERAMGEAGLALCKVNPARARRFAEAIGQSAKTDRIDAAMLARMGAVLEPAARAAPSKT HHHHHHHHCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHCCCCHH ASDLKELHMMRAALVKDRTAAKNRAGTLTLPLLKRQLRQRLAAIDRQITQIEQAMQALIE HHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADPELARKRDILISIPGIAERSAFALLTGMPELGDLGNPAASALSGTAPRTRQSGKWTGK CCHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHH AFVQGGRAHVRRSLYMPALAAARFNPDLNHTYRHLTGRGKPPKLALTAIMRKLIILANTL HHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH IRENRKWTPKPN HHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2403542 [H]