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The map label for this gene is ydeB [H]

Identifier: 114799783

GI number: 114799783

Start: 3561882

End: 3562406

Strand: Direct

Name: ydeB [H]

Synonym: HNE_3419

Alternate gene names: 114799783

Gene position: 3561882-3562406 (Clockwise)

Preceding gene: 114799500

Following gene: 114797093

Centisome position: 96.14

GC content: 59.81

Gene sequence:

>525_bases
ATGGCGAAGAAGGCAGAAGCTCGGACTCATGCGTTCGAGGTCGGTCAGAGTGTTGTCTACCCGGCGCACGGCGTAGGCAA
AATCACCGGTATCGAAAGTCAGACAGTCGCGGGTATGCAGCTGGAAGTTTATGTCGTGGCATTTGACCAGGACAAGATGA
TCCTGCGTGTGCCGACGAATCGCGCCGAAGCTTCGGGTATGCGGGCCCTCGCCGGCTCCAAACTGGTGGATGACGCGCTC
AAGACGCTCGGCGGCAAGGCCCGGATCAAGCGGACCATGTGGTCGCGCCGCGCTCAGGAATACGAAGCCAAGATCAATTC
GGGTGACCTGATCTCGATCGCGGAGGTCGTTCGCGACCTGCACCGCGGCGATGACCAGCCTGAGCAATCCTATTCCGAGC
GCCAACTCTATGAGAGCGCGCTGGACCGGATGGCCCGCGAACTGGCCGCAGTCGAGAATATCGACAAAGGCAAGGCGATG
GAAAAACTCGCCAAGTCGCTGGCCAAGAAAAAAGTCGCCGCCTGA

Upstream 100 bases:

>100_bases
TCAAGAAGAGCGGAATTTCCTAACTCAGACCCTTAATCAGGAACTGGGCTGGAGAAACTCGACTCTCTTAATGTGTGTGT
AGAAAAGGGTCTTACCTAAT

Downstream 100 bases:

>100_bases
TTTCAGGCTGAGCGCTCCAAGACAAAAGCCCCGCAGGAAACTGTGGGGCTTTTTGCTTTCCGGGGTGGCGCGCGAGGAAA
TCAGAAGGGGAAACCTTCTC

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MAKKAEARTHAFEVGQSVVYPAHGVGKITGIESQTVAGMQLEVYVVAFDQDKMILRVPTNRAEASGMRALAGSKLVDDAL
KTLGGKARIKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRGDDQPEQSYSERQLYESALDRMARELAAVENIDKGKAM
EKLAKSLAKKKVAA

Sequences:

>Translated_174_residues
MAKKAEARTHAFEVGQSVVYPAHGVGKITGIESQTVAGMQLEVYVVAFDQDKMILRVPTNRAEASGMRALAGSKLVDDAL
KTLGGKARIKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRGDDQPEQSYSERQLYESALDRMARELAAVENIDKGKAM
EKLAKSLAKKKVAA
>Mature_173_residues
AKKAEARTHAFEVGQSVVYPAHGVGKITGIESQTVAGMQLEVYVVAFDQDKMILRVPTNRAEASGMRALAGSKLVDDALK
TLGGKARIKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRGDDQPEQSYSERQLYESALDRMARELAAVENIDKGKAME
KLAKSLAKKKVAA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 19133; Mature: 19002

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKAEARTHAFEVGQSVVYPAHGVGKITGIESQTVAGMQLEVYVVAFDQDKMILRVPTN
CCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCCC
RAEASGMRALAGSKLVDDALKTLGGKARIKRTMWSRRAQEYEAKINSGDLISIAEVVRDL
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
HRGDDQPEQSYSERQLYESALDRMARELAAVENIDKGKAMEKLAKSLAKKKVAA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKKAEARTHAFEVGQSVVYPAHGVGKITGIESQTVAGMQLEVYVVAFDQDKMILRVPTN
CCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCCC
RAEASGMRALAGSKLVDDALKTLGGKARIKRTMWSRRAQEYEAKINSGDLISIAEVVRDL
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
HRGDDQPEQSYSERQLYESALDRMARELAAVENIDKGKAMEKLAKSLAKKKVAA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]