| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is dld [H]
Identifier: 114799766
GI number: 114799766
Start: 1694636
End: 1696297
Strand: Direct
Name: dld [H]
Synonym: HNE_1654
Alternate gene names: 114799766
Gene position: 1694636-1696297 (Clockwise)
Preceding gene: 114799533
Following gene: 114800530
Centisome position: 45.74
GC content: 63.36
Gene sequence:
>1662_bases ATGATCTCAGACGCCGCCTTGATTCGAGAACTCAAAGTCATTGTCGGCTCTGGTCATGTAAACGTGCGTGACGACAGGCG GGCCTCTGGCAAGCCGGTTACATTTGTGCGGCCGCGCACGCTGGTTGAGGTATGGCGCGTGGCCAGGGCGAGCGTGCGCG CCGGGCGGATCATTCTGATGCGGGCGGGCGGCACCAGCCTTACGGGCGGATCGGCGCCGAACGGCGCGTATGATCGCGGT GTGGTGGTCATCAACACGATGCGCCTGAAGGGTATTCACATGTTGAATGCCGGGGCGCAGGTGCTTTGCCTGCCGGGCAC AACGCTGTTCGAACTGGAACGGGAATTGCGCCCCTTGCAGCGGGAGCCACATTCCGAGCTCGGATCAACCTGGCTCGGCG CTTCCGTGATTGGGGGGGTCTGCAACAATTCCGGCGGCGCGCAGGTGCGGCGTGGCCCGGCTTATACTGAAGCGGCGCTT TATGCGCATGTGGATGAGACGGGCGAACTGCGGCTGGTCAACGAGCTGGGCATGGATCTTGGGCGCGACCCGGAGGAGCA GCTGGAAAGTCTGGAGCGTGGAGAATTCGTGCGGGTACTGCATGACATGCATGAGCGCGCCTGCTCGGCACATGGCTTTG TGGAGCGGGTCCGCGATGTGGACGCCCCGTCTCCGGCGCGGTTCAATGCTGACCCGCGATACCTGAAGGGCGCGTCCGGA AGTGCGGGCCGGTTGATCGTGTTTGCCGTGCGCCTGGATACATTTCCAAGGGCGGCGAATACCCAGGTGTTTCATGTCGC GACCGACGATGCCGGTGTGCTGTCGGATGTCCGGCGGCGGATGCTGGGGCAGGCGGCTCTGGTGCCGATTTCGGCCGAGT ATATGCACCGGGACACATTCCGGATGGCGGAGCGCGAGGGGAAGGATCTTCTTCTGGCCGTGCGGACGGCCGGAGCCGAC AGGTTGCCTTTCCTGTTTGGATTCAAGGCTGGAGTTGATGGGGTTGCCCGATGGCTCGGATTTGGCCGTGCGTGTTTGAC GGACCGGCTGCTTCAGGCGGTTGGGCGGCTGGCGCCGCCGCAACTTTCCGAGACGTTGCGGCAGATGGGCGAGCAATATG CGCACCACCTGTTCCTCAAGGTGGAGGCCGATCAGGCCGCTGGCGTGCGCGCGCTGCTGGCCGATGTGGTGCCCGCACTT AAGGGCGCGTGCCATGAATGCTCACCCGCAGAAGGCAGGCAGGTGTTCCTGCATCGGTTTGCGGCAACTGGCGCGGCGGC GCGCCATGCCGCTATGAGCCGAGGCAAGGCGGGCGCCGTGGTGGAGTTGGACGTGGCGTTGAGGCGGAACGACAAGGCCT GGTGGTATGTGTTGCCAGATCACCTGAAGGGCATGGTTGAGCATACGCTCGTACACGGTCATTTCTTTTGCCATGTGTTT CAACAGGATTACATTCTGAAGAAGGGCGCTGACGCTGCCGCGTTCCGGCGGGGCATGGCGGCCCATTATGAGGCGCGGGG CGCTGAATGCCCGGCAGAACATAATGTGGGGCATCGCCACAAGGCCAAGCCGGCGCTGGCGGCGTTTTACCGGAAGCTTG ATCCCACGAACACGCTCAATCCCGGCATCGGCAGGACATCGCGCGACAAAAACTGGAAATAG
Upstream 100 bases:
>100_bases CTGTTCATTTTCTGGGGAATTCTACCGCAATGCCTTCATTCGCTTGATGGTTTCCCGGTGACGTGGATCATCACCGGAAT ATTGATGATACCTAATCGGC
Downstream 100 bases:
>100_bases ACCGGCCTAGCTGTGGTCGTGCCAGACCACGCGCTTGGCAAGCTCGCGTGGGTACTCTGTCCGCATGGTGGCCAGATAAG CCTCTTCCAGCCGCCGCAAG
Product: D-lactate dehydrogenase
Products: NA
Alternate protein names: Respiratory D-lactate dehydrogenase [H]
Number of amino acids: Translated: 553; Mature: 553
Protein sequence:
>553_residues MISDAALIRELKVIVGSGHVNVRDDRRASGKPVTFVRPRTLVEVWRVARASVRAGRIILMRAGGTSLTGGSAPNGAYDRG VVVINTMRLKGIHMLNAGAQVLCLPGTTLFELERELRPLQREPHSELGSTWLGASVIGGVCNNSGGAQVRRGPAYTEAAL YAHVDETGELRLVNELGMDLGRDPEEQLESLERGEFVRVLHDMHERACSAHGFVERVRDVDAPSPARFNADPRYLKGASG SAGRLIVFAVRLDTFPRAANTQVFHVATDDAGVLSDVRRRMLGQAALVPISAEYMHRDTFRMAEREGKDLLLAVRTAGAD RLPFLFGFKAGVDGVARWLGFGRACLTDRLLQAVGRLAPPQLSETLRQMGEQYAHHLFLKVEADQAAGVRALLADVVPAL KGACHECSPAEGRQVFLHRFAATGAAARHAAMSRGKAGAVVELDVALRRNDKAWWYVLPDHLKGMVEHTLVHGHFFCHVF QQDYILKKGADAAAFRRGMAAHYEARGAECPAEHNVGHRHKAKPALAAFYRKLDPTNTLNPGIGRTSRDKNWK
Sequences:
>Translated_553_residues MISDAALIRELKVIVGSGHVNVRDDRRASGKPVTFVRPRTLVEVWRVARASVRAGRIILMRAGGTSLTGGSAPNGAYDRG VVVINTMRLKGIHMLNAGAQVLCLPGTTLFELERELRPLQREPHSELGSTWLGASVIGGVCNNSGGAQVRRGPAYTEAAL YAHVDETGELRLVNELGMDLGRDPEEQLESLERGEFVRVLHDMHERACSAHGFVERVRDVDAPSPARFNADPRYLKGASG SAGRLIVFAVRLDTFPRAANTQVFHVATDDAGVLSDVRRRMLGQAALVPISAEYMHRDTFRMAEREGKDLLLAVRTAGAD RLPFLFGFKAGVDGVARWLGFGRACLTDRLLQAVGRLAPPQLSETLRQMGEQYAHHLFLKVEADQAAGVRALLADVVPAL KGACHECSPAEGRQVFLHRFAATGAAARHAAMSRGKAGAVVELDVALRRNDKAWWYVLPDHLKGMVEHTLVHGHFFCHVF QQDYILKKGADAAAFRRGMAAHYEARGAECPAEHNVGHRHKAKPALAAFYRKLDPTNTLNPGIGRTSRDKNWK >Mature_553_residues MISDAALIRELKVIVGSGHVNVRDDRRASGKPVTFVRPRTLVEVWRVARASVRAGRIILMRAGGTSLTGGSAPNGAYDRG VVVINTMRLKGIHMLNAGAQVLCLPGTTLFELERELRPLQREPHSELGSTWLGASVIGGVCNNSGGAQVRRGPAYTEAAL YAHVDETGELRLVNELGMDLGRDPEEQLESLERGEFVRVLHDMHERACSAHGFVERVRDVDAPSPARFNADPRYLKGASG SAGRLIVFAVRLDTFPRAANTQVFHVATDDAGVLSDVRRRMLGQAALVPISAEYMHRDTFRMAEREGKDLLLAVRTAGAD RLPFLFGFKAGVDGVARWLGFGRACLTDRLLQAVGRLAPPQLSETLRQMGEQYAHHLFLKVEADQAAGVRALLADVVPAL KGACHECSPAEGRQVFLHRFAATGAAARHAAMSRGKAGAVVELDVALRRNDKAWWYVLPDHLKGMVEHTLVHGHFFCHVF QQDYILKKGADAAAFRRGMAAHYEARGAECPAEHNVGHRHKAKPALAAFYRKLDPTNTLNPGIGRTSRDKNWK
Specific function: First component of the membrane-bound D-lactate oxidase, which is believed to play an important role in the energization of the active transport of a variety of sugars and amino acids [H]
COG id: COG0277
COG function: function code C; FAD/FMN-containing dehydrogenases
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding PCMH-type domain [H]
Homologues:
Organism=Escherichia coli, GI1788454, Length=563, Percent_Identity=46.1811722912966, Blast_Score=520, Evalue=1e-149,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016172 - InterPro: IPR016173 - InterPro: IPR012256 - InterPro: IPR016166 - InterPro: IPR016167 - InterPro: IPR016164 - InterPro: IPR016168 - InterPro: IPR015409 - InterPro: IPR006094 [H]
Pfam domain/function: PF01565 FAD_binding_4; PF09330 Lact-deh-memb [H]
EC number: =1.1.1.28 [H]
Molecular weight: Translated: 60508; Mature: 60508
Theoretical pI: Translated: 9.93; Mature: 9.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISDAALIRELKVIVGSGHVNVRDDRRASGKPVTFVRPRTLVEVWRVARASVRAGRIILM CCCHHHHHHHHHHHEECCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEEEE RAGGTSLTGGSAPNGAYDRGVVVINTMRLKGIHMLNAGAQVLCLPGTTLFELERELRPLQ ECCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEECCCCEEEEECCCHHHHHHHHHHHHH REPHSELGSTWLGASVIGGVCNNSGGAQVRRGPAYTEAALYAHVDETGELRLVNELGMDL CCCHHHHCCHHHHHHHHHHHHCCCCCCCEECCCCHHHHEEEEECCCCCCEEEHHHHCCCC GRDPEEQLESLERGEFVRVLHDMHERACSAHGFVERVRDVDAPSPARFNADPRYLKGASG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCC SAGRLIVFAVRLDTFPRAANTQVFHVATDDAGVLSDVRRRMLGQAALVPISAEYMHRDTF CCCEEEEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCHHCCCCCHHHHHHHHH RMAEREGKDLLLAVRTAGADRLPFLFGFKAGVDGVARWLGFGRACLTDRLLQAVGRLAPP HHHHHCCCEEEEEEECCCCCCCCEEEEHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCH QLSETLRQMGEQYAHHLFLKVEADQAAGVRALLADVVPALKGACHECSPAEGRQVFLHRF HHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH AATGAAARHAAMSRGKAGAVVELDVALRRNDKAWWYVLPDHLKGMVEHTLVHGHFFCHVF HHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHEEEEH QQDYILKKGADAAAFRRGMAAHYEARGAECPAEHNVGHRHKAKPALAAFYRKLDPTNTLN HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC PGIGRTSRDKNWK CCCCCCCCCCCCC >Mature Secondary Structure MISDAALIRELKVIVGSGHVNVRDDRRASGKPVTFVRPRTLVEVWRVARASVRAGRIILM CCCHHHHHHHHHHHEECCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEEEE RAGGTSLTGGSAPNGAYDRGVVVINTMRLKGIHMLNAGAQVLCLPGTTLFELERELRPLQ ECCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEECCCCEEEEECCCHHHHHHHHHHHHH REPHSELGSTWLGASVIGGVCNNSGGAQVRRGPAYTEAALYAHVDETGELRLVNELGMDL CCCHHHHCCHHHHHHHHHHHHCCCCCCCEECCCCHHHHEEEEECCCCCCEEEHHHHCCCC GRDPEEQLESLERGEFVRVLHDMHERACSAHGFVERVRDVDAPSPARFNADPRYLKGASG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCC SAGRLIVFAVRLDTFPRAANTQVFHVATDDAGVLSDVRRRMLGQAALVPISAEYMHRDTF CCCEEEEEEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCHHCCCCCHHHHHHHHH RMAEREGKDLLLAVRTAGADRLPFLFGFKAGVDGVARWLGFGRACLTDRLLQAVGRLAPP HHHHHCCCEEEEEEECCCCCCCCEEEEHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCH QLSETLRQMGEQYAHHLFLKVEADQAAGVRALLADVVPALKGACHECSPAEGRQVFLHRF HHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH AATGAAARHAAMSRGKAGAVVELDVALRRNDKAWWYVLPDHLKGMVEHTLVHGHFFCHVF HHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHEEEEH QQDYILKKGADAAAFRRGMAAHYEARGAECPAEHNVGHRHKAKPALAAFYRKLDPTNTLN HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC PGIGRTSRDKNWK CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 6386470; 3882663; 9278503; 10944213 [H]