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The map label for this gene is rpsU

Identifier: 114799687

GI number: 114799687

Start: 3341564

End: 3341773

Strand: Direct

Name: rpsU

Synonym: HNE_3162

Alternate gene names: 114799687

Gene position: 3341564-3341773 (Clockwise)

Preceding gene: 114799776

Following gene: 114800275

Centisome position: 90.19

GC content: 62.38

Gene sequence:

>210_bases
ATAGTACAGATCGTCGTCCGCGATAACAATGTCGAGCAGGCTCTGCGCGCGCTGAAGAAGAAGATGCAGCGCGAAGGCCT
GTTCCGGGAAATGAAGGCCCGTCAGCACTTCGAAAAGCCCTCCGAGAAGAAAGCCCGCCAGCGCGCCGAAGCCGTGCGCC
GTGCCCGCAAGCTCGCTCGCAAACGCGCCCAGCGCGAAGGCATCGTGTAG

Upstream 100 bases:

>100_bases
CGTTTCCCCGTGATATAGGCCGCGCTTCTTAGGCTGTCAGGCCCGAAATCAACGAATTCCAGGGTGCCTGGCGCCCGTAA
GAACCCGATGGAGAAGTCCC

Downstream 100 bases:

>100_bases
ACCGAGACCTGAAGGCGCCATCGCCGGTCCAGACAAGAAAAACCCCGCCAGAGCCTCTGGCGGGGTTTTTGTTTGTTCCT
GCTGCCATCCACAGGGCAAT

Product: 30S ribosomal protein S21

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 69

Protein sequence:

>69_residues
MVQIVVRDNNVEQALRALKKKMQREGLFREMKARQHFEKPSEKKARQRAEAVRRARKLARKRAQREGIV

Sequences:

>Translated_69_residues
MVQIVVRDNNVEQALRALKKKMQREGLFREMKARQHFEKPSEKKARQRAEAVRRARKLARKRAQREGIV
>Mature_69_residues
MVQIVVRDNNVEQALRALKKKMQREGLFREMKARQHFEKPSEKKARQRAEAVRRARKLARKRAQREGIV

Specific function: Unknown

COG id: COG0828

COG function: function code J; Ribosomal protein S21

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S21P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS21_HYPNA (Q0BXF6)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_761837.1
- ProteinModelPortal:   Q0BXF6
- SMR:   Q0BXF6
- STRING:   Q0BXF6
- GeneID:   4288709
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_3162
- TIGR:   HNE_3162
- eggNOG:   COG0828
- HOGENOM:   HBG708268
- OMA:   KIQNDGL
- BioCyc:   HNEP81032:HNE_3162-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00358
- InterPro:   IPR001911
- InterPro:   IPR018278
- PRINTS:   PR00976
- ProDom:   PD005521
- TIGRFAMs:   TIGR00030

Pfam domain/function: PF01165 Ribosomal_S21

EC number: NA

Molecular weight: Translated: 8255; Mature: 8255

Theoretical pI: Translated: 12.20; Mature: 12.20

Prosite motif: PS01181 RIBOSOMAL_S21

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQIVVRDNNVEQALRALKKKMQREGLFREMKARQHFEKPSEKKARQRAEAVRRARKLAR
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
KRAQREGIV
HHHHHCCCC
>Mature Secondary Structure
MVQIVVRDNNVEQALRALKKKMQREGLFREMKARQHFEKPSEKKARQRAEAVRRARKLAR
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
KRAQREGIV
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA