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The map label for this gene is ligT [C]

Identifier: 114799686

GI number: 114799686

Start: 3390587

End: 3391147

Strand: Direct

Name: ligT [C]

Synonym: HNE_3221

Alternate gene names: 114799686

Gene position: 3390587-3391147 (Clockwise)

Preceding gene: 114798253

Following gene: 114800438

Centisome position: 91.51

GC content: 64.88

Gene sequence:

>561_bases
ATGTTCCGCCTGTTTGCTGCGCTCCCGATTCCGCCTGAAGTCTCGGCTCCCTTGCGGAAGCTGCAGAAAGATCTGCCCGG
CGCCAGCTGGCGGCCGGAAGAAAACTTCCATGTCACCCTCTGCTTCTATGGTGAGCTTACCGGCAATCAGGCCCGCGATC
TGGACGAGCTGCTGGACGAGATTGAAGCCGATGCGTTCGATCTGAGGGTCGAGGGCATGGGCTGGTTCGGCCGGCGCGAG
CCGAACGCCGTCTGGGCACGGATTGGCGAATGCGATGCGCTACGCGCCCTCGCCAGCCAGTGTGAGCGCGCCGCAAGACG
CCTCGGCCTCCCGCTGGAGAAACACCCCTTCACCCCGCATATTACGTTGGCCTACCTGCACGCCACGCCCCTAGAGGCCG
CTCAGGAATGGGTTCACACTCACCAGTCTCATCGCAGCGAGCCCTTCCGCGCGCGCCTCTTCCACCTCTATGCAAGCCGC
CCCCGCCGCGGCGGCGGCCCCTCCCGCTACGAGCCAATGGCCGACTATCCACTGCGAGACCTGCTGGCAGGATTTGACTG
A

Upstream 100 bases:

>100_bases
TGGCCGCCTGGATGCCCTCGCGGGTTGAAGCCGCGCTGGAAAGCCAGACTGAAGATCAGAGTGGCTTTTCATCGGATTAA
GTGTGTGGTGAACAGGCGGT

Downstream 100 bases:

>100_bases
TCTGAAACGTCTGACTGGTGCCCCTGGCCGGACTCGAACCAGCACTCCTTGCGGAAGCGGATTTTGAATCCGCCGCGTCT
ACCATTCCACCACAGGGGCT

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: 2 5' RNA Ligase; ABC Transporter

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MFRLFAALPIPPEVSAPLRKLQKDLPGASWRPEENFHVTLCFYGELTGNQARDLDELLDEIEADAFDLRVEGMGWFGRRE
PNAVWARIGECDALRALASQCERAARRLGLPLEKHPFTPHITLAYLHATPLEAAQEWVHTHQSHRSEPFRARLFHLYASR
PRRGGGPSRYEPMADYPLRDLLAGFD

Sequences:

>Translated_186_residues
MFRLFAALPIPPEVSAPLRKLQKDLPGASWRPEENFHVTLCFYGELTGNQARDLDELLDEIEADAFDLRVEGMGWFGRRE
PNAVWARIGECDALRALASQCERAARRLGLPLEKHPFTPHITLAYLHATPLEAAQEWVHTHQSHRSEPFRARLFHLYASR
PRRGGGPSRYEPMADYPLRDLLAGFD
>Mature_186_residues
MFRLFAALPIPPEVSAPLRKLQKDLPGASWRPEENFHVTLCFYGELTGNQARDLDELLDEIEADAFDLRVEGMGWFGRRE
PNAVWARIGECDALRALASQCERAARRLGLPLEKHPFTPHITLAYLHATPLEAAQEWVHTHQSHRSEPFRARLFHLYASR
PRRGGGPSRYEPMADYPLRDLLAGFD

Specific function: Specifically Ligates tRNA Half-Molecules Containing Nucleoside Base Modifications And Shows A Preference Among Different tRNA Species. Acts In The Absence Of ATP To Form A 2'-5' Phosphodiester Linkage. [C]

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 6.5.1.- [C]

Molecular weight: Translated: 21241; Mature: 21241

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRLFAALPIPPEVSAPLRKLQKDLPGASWRPEENFHVTLCFYGELTGNQARDLDELLDE
CCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
IEADAFDLRVEGMGWFGRREPNAVWARIGECDALRALASQCERAARRLGLPLEKHPFTPH
HCCCCEEEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
ITLAYLHATPLEAAQEWVHTHQSHRSEPFRARLFHLYASRPRRGGGPSRYEPMADYPLRD
EEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
LLAGFD
HHCCCC
>Mature Secondary Structure
MFRLFAALPIPPEVSAPLRKLQKDLPGASWRPEENFHVTLCFYGELTGNQARDLDELLDE
CCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
IEADAFDLRVEGMGWFGRREPNAVWARIGECDALRALASQCERAARRLGLPLEKHPFTPH
HCCCCEEEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
ITLAYLHATPLEAAQEWVHTHQSHRSEPFRARLFHLYASRPRRGGGPSRYEPMADYPLRD
EEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
LLAGFD
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA