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The map label for this gene is ycaR [C]

Identifier: 114799656

GI number: 114799656

Start: 3682484

End: 3682741

Strand: Reverse

Name: ycaR [C]

Synonym: HNE_3545

Alternate gene names: 114799656

Gene position: 3682741-3682484 (Counterclockwise)

Preceding gene: 114798647

Following gene: 114797817

Centisome position: 99.4

GC content: 62.02

Gene sequence:

>258_bases
ATGAGCGATTTGCCAGACCAGACTCCAAAGGATGACAGCGTCCTGTTCGAGGCCAACGGGGTTGACCCGCGCCTGCTCGA
AATCCTGATCTGCCCCGCCACGCGCCAACCGCTGGCCTATGACCGCGCGCGCCATGAACTCGTCTCGAAGAATGCTCGCC
TCGCCTATCCCATCCGCGGGGGCATTCCCATCATGCTGGAAGAAGAAGCACGCGACCTTGATGATACGGAAGGCACAGCT
GGCGGGGGCGAGGCATGA

Upstream 100 bases:

>100_bases
GATCTGCTCGGGCGCGCCAACGCCTTGACGGCCCTGCTGGAGTTCGGCAGTGCGCCGGGCGGCGAAGGCCCGGTTCAATA
AGATCTCGATAGGAACAGCC

Downstream 100 bases:

>100_bases
GCGCGCAGCCCTGGCCGGTAAAACTCACCTTCCGCGCCGGGGCGCAGGAGCTGTTTGCCGTGTTTGATGATGGCCAGTCT
GGCCGCGTGGATTATCGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 84

Protein sequence:

>85_residues
MSDLPDQTPKDDSVLFEANGVDPRLLEILICPATRQPLAYDRARHELVSKNARLAYPIRGGIPIMLEEEARDLDDTEGTA
GGGEA

Sequences:

>Translated_85_residues
MSDLPDQTPKDDSVLFEANGVDPRLLEILICPATRQPLAYDRARHELVSKNARLAYPIRGGIPIMLEEEARDLDDTEGTA
GGGEA
>Mature_84_residues
SDLPDQTPKDDSVLFEANGVDPRLLEILICPATRQPLAYDRARHELVSKNARLAYPIRGGIPIMLEEEARDLDDTEGTAG
GGEA

Specific function: Unknown

COG id: COG2835

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0434 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3545_HYPNA (Q0BWC7)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_762216.1
- ProteinModelPortal:   Q0BWC7
- SMR:   Q0BWC7
- STRING:   Q0BWC7
- GeneID:   4288678
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_3545
- NMPDR:   fig|228405.5.peg.3395
- TIGR:   HNE_3545
- eggNOG:   COG2835
- HOGENOM:   HBG713593
- OMA:   MITDPKM
- PhylomeDB:   Q0BWC7
- BioCyc:   HNEP81032:HNE_3545-MONOMER
- HAMAP:   MF_01187
- InterPro:   IPR005651

Pfam domain/function: PF03966 Trm112p

EC number: NA

Molecular weight: Translated: 9276; Mature: 9145

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLPDQTPKDDSVLFEANGVDPRLLEILICPATRQPLAYDRARHELVSKNARLAYPIRG
CCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECC
GIPIMLEEEARDLDDTEGTAGGGEA
CCEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDLPDQTPKDDSVLFEANGVDPRLLEILICPATRQPLAYDRARHELVSKNARLAYPIRG
CCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECC
GIPIMLEEEARDLDDTEGTAGGGEA
CCEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA