| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is fyuA [H]
Identifier: 114799631
GI number: 114799631
Start: 2638245
End: 2640437
Strand: Direct
Name: fyuA [H]
Synonym: HNE_2505
Alternate gene names: 114799631
Gene position: 2638245-2640437 (Clockwise)
Preceding gene: 114800407
Following gene: 114798942
Centisome position: 71.21
GC content: 57.96
Gene sequence:
>2193_bases GTGAAACGCGCTAATATGAAGACCCACCTTCTCTGCTCTGCCGGCCTGCTTGCCATAACGGCTATGGGCCATTCCCTGCC GGCGATAGCTCAGGAAAATGATACGTCTGCAGATGAGGTAAGCCGGACATTGGAGACGGTCACCGTCACGGCCCAGTTCC GCGATCAGCAATTGCAGGATGTGCCCAACAGCATTGTCGCCTTCACGGCGCAGGACATTGAAGATGCGGGCATCCGGTCA ACCGAGGACTTTATCGCCCTCACGCCGAACGTCTCGTTTGACAACAGCTTCACCTATCTCAACAGCTTCGTTGTTGTCCG GGGCGTCACCCAGATCAACAATGCCGACTCGCCGGTTGCGATCATTGTCGACGGGGTGCCTCAGAACAATCAGAAACAGT TCAAGATGCCCCTCTTCGATGTCGAGCAGATCGAAGTCCTTAAAGGACCCCAGGGCTCGCTGTACGGGCGCAACGCGATC GGCGGCGCCATAAATATCGTTACCCGTCAGCCCACAAATGAAATCGAAGGGTTCGTGTCAGGCGGCCTCTCGAACGGAAG TGGCTACCGGATGGAAGGCGGTATCAGCGGCCCGGTCATCAAGGACCAGCTGATGTTCCGCCTGTCAGGCTCGTACTATG AGACAGACGGGCTGATCGAGAACGCCTATCTCGGCCGCACGGTCGATACGGTGGACCATGACTATTCCATCCGGGGCAAA CTTGCCTACACCCCCAACGATGTGTTTTCGCTGGACCTGCGCGCCGCCTACACCGACGCCCGGGCCGGGGCTGCTTATGA CGCGGTCGTCAACAGCCAGCTGAACCCGGACTTTCGCTCAGGAAACGATTCCAACGATATTTTCGCCCCGGCCTCAAATC TCGCGGGTATTACCGAGGCAGACATTCTGGACCTGAGTGGCAAGGCAAGCCTGGACATGGGATTTGCCACGGCCACCTAC ATCCTTGGCTATACCGATCTTACCGAAACCTACCGGTCGGATCTCGACTTTTCGAATCCCGATCAGCCAACCTTCGGGCC GTTCGGACAGCTCGGCCAGGGCCAGAATCTCTCTCTGGACCTGCTTAGCCAGGAACTGAGATTTGTCTCGCCCGATGAGC GCACCTTCCGCTGGATTGCCGGCGGTTATTATCTGGAAACTGATCGCAGCCTGCTGACTCGGGGTTTTCTGGACCTCACC GGTTCTGTGGACCAGTTCGACACCGGTATCGCCATCATTGACCGCAGCGAAGACAACGACAACACGGCCTGGGCCCTGTT CGGACAGGCGGAGTTTGATCTCAATGACCGCACCGTACTCCAACTCGGCGCCCGCTATGACGAGGACGAACGCAACCAGA CGCAAGGCGCAGCCGGTCCCGTCCGGACAAGGAGCTTCAGCGCCTTCCAGCCAAAAATCACGCTCAGCTATGACATCCTG CCTGATGTCCTCGGTTACGCCACCTACAGTACGGGCTTCCGCTCCGGCGGGTTCAATGCGCCAGGGGTCGTCCTTGACAG TTTCGGCGACGAAACCCTCACCAATTACGAAGCTGGCCTGAAGACAGGCTTTGCCGACGGGAACGGAACGCTCAACATCG CGGCATTTTCCTCGGAAAGCGAAGGGTTCCAGTTCTTCTTCGTAGATGCCAGCACCGTCTCCCAGATTATCTCCAACCTC GACAAGGTGGATCTGCGCGGGTTTGACGCCGACTTCCGCTATCGTGTCAGCGAGAGCTTCACGCTTTCGGGCGGCGTCGG GTATACAGATTCCGAGATCAGATCGATCGGCAACGCGCAGCTGGAATCCTACCTCACCGCCTCGGGCGTGGACACTGACG CCGTTATCGGATCGCGCTCCCCCAAGACCACAGACTGGTCAGTCAGCCTGAGCGGTCAGTATGTCCGCCCCGTAAGATCT GGGCTGGATGCGGTCCTGCGGGCTGATTACGAATATCAGGGCAACAAATACTGGCAGATCGACAATCTCGATGTCCGCGA CCCGGTGAACCTGCTCTCCCTCAGGTTCTCGTTGGAAAGCGACATCTGGTCTGCCTCTCTCTGGGGCAAGAATATTCTGG ATGAGGAATATTATGCCGACTTCAACCCCGCAGAATATGCAGGCGCTCCCTTCGACCTTGGCTCTCAGGCCCGGCCGGCA ACATACGGGGTCGACTTCAAATACAGGTTCTAG
Upstream 100 bases:
>100_bases GCTTCGGGCTCGATTTTGACTTCACGCCCCTCGTGAAGCCCGCCGACTGACTTTGCTCACCTCTTCCATCATTCAGATCA AGACAACGGGGTACCAGACT
Downstream 100 bases:
>100_bases GCAGAACCCGAGGTCTTAGGGCAGCGGGCAGACAGCGCACAGCGTTGTCTGCCCGTCTGTGCTGGCCCCGATCCCCTTCC TTACGGGCTCAGGACGGCCG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 730; Mature: 730
Protein sequence:
>730_residues MKRANMKTHLLCSAGLLAITAMGHSLPAIAQENDTSADEVSRTLETVTVTAQFRDQQLQDVPNSIVAFTAQDIEDAGIRS TEDFIALTPNVSFDNSFTYLNSFVVVRGVTQINNADSPVAIIVDGVPQNNQKQFKMPLFDVEQIEVLKGPQGSLYGRNAI GGAINIVTRQPTNEIEGFVSGGLSNGSGYRMEGGISGPVIKDQLMFRLSGSYYETDGLIENAYLGRTVDTVDHDYSIRGK LAYTPNDVFSLDLRAAYTDARAGAAYDAVVNSQLNPDFRSGNDSNDIFAPASNLAGITEADILDLSGKASLDMGFATATY ILGYTDLTETYRSDLDFSNPDQPTFGPFGQLGQGQNLSLDLLSQELRFVSPDERTFRWIAGGYYLETDRSLLTRGFLDLT GSVDQFDTGIAIIDRSEDNDNTAWALFGQAEFDLNDRTVLQLGARYDEDERNQTQGAAGPVRTRSFSAFQPKITLSYDIL PDVLGYATYSTGFRSGGFNAPGVVLDSFGDETLTNYEAGLKTGFADGNGTLNIAAFSSESEGFQFFFVDASTVSQIISNL DKVDLRGFDADFRYRVSESFTLSGGVGYTDSEIRSIGNAQLESYLTASGVDTDAVIGSRSPKTTDWSVSLSGQYVRPVRS GLDAVLRADYEYQGNKYWQIDNLDVRDPVNLLSLRFSLESDIWSASLWGKNILDEEYYADFNPAEYAGAPFDLGSQARPA TYGVDFKYRF
Sequences:
>Translated_730_residues MKRANMKTHLLCSAGLLAITAMGHSLPAIAQENDTSADEVSRTLETVTVTAQFRDQQLQDVPNSIVAFTAQDIEDAGIRS TEDFIALTPNVSFDNSFTYLNSFVVVRGVTQINNADSPVAIIVDGVPQNNQKQFKMPLFDVEQIEVLKGPQGSLYGRNAI GGAINIVTRQPTNEIEGFVSGGLSNGSGYRMEGGISGPVIKDQLMFRLSGSYYETDGLIENAYLGRTVDTVDHDYSIRGK LAYTPNDVFSLDLRAAYTDARAGAAYDAVVNSQLNPDFRSGNDSNDIFAPASNLAGITEADILDLSGKASLDMGFATATY ILGYTDLTETYRSDLDFSNPDQPTFGPFGQLGQGQNLSLDLLSQELRFVSPDERTFRWIAGGYYLETDRSLLTRGFLDLT GSVDQFDTGIAIIDRSEDNDNTAWALFGQAEFDLNDRTVLQLGARYDEDERNQTQGAAGPVRTRSFSAFQPKITLSYDIL PDVLGYATYSTGFRSGGFNAPGVVLDSFGDETLTNYEAGLKTGFADGNGTLNIAAFSSESEGFQFFFVDASTVSQIISNL DKVDLRGFDADFRYRVSESFTLSGGVGYTDSEIRSIGNAQLESYLTASGVDTDAVIGSRSPKTTDWSVSLSGQYVRPVRS GLDAVLRADYEYQGNKYWQIDNLDVRDPVNLLSLRFSLESDIWSASLWGKNILDEEYYADFNPAEYAGAPFDLGSQARPA TYGVDFKYRF >Mature_730_residues MKRANMKTHLLCSAGLLAITAMGHSLPAIAQENDTSADEVSRTLETVTVTAQFRDQQLQDVPNSIVAFTAQDIEDAGIRS TEDFIALTPNVSFDNSFTYLNSFVVVRGVTQINNADSPVAIIVDGVPQNNQKQFKMPLFDVEQIEVLKGPQGSLYGRNAI GGAINIVTRQPTNEIEGFVSGGLSNGSGYRMEGGISGPVIKDQLMFRLSGSYYETDGLIENAYLGRTVDTVDHDYSIRGK LAYTPNDVFSLDLRAAYTDARAGAAYDAVVNSQLNPDFRSGNDSNDIFAPASNLAGITEADILDLSGKASLDMGFATATY ILGYTDLTETYRSDLDFSNPDQPTFGPFGQLGQGQNLSLDLLSQELRFVSPDERTFRWIAGGYYLETDRSLLTRGFLDLT GSVDQFDTGIAIIDRSEDNDNTAWALFGQAEFDLNDRTVLQLGARYDEDERNQTQGAAGPVRTRSFSAFQPKITLSYDIL PDVLGYATYSTGFRSGGFNAPGVVLDSFGDETLTNYEAGLKTGFADGNGTLNIAAFSSESEGFQFFFVDASTVSQIISNL DKVDLRGFDADFRYRVSESFTLSGGVGYTDSEIRSIGNAQLESYLTASGVDTDAVIGSRSPKTTDWSVSLSGQYVRPVRS GLDAVLRADYEYQGNKYWQIDNLDVRDPVNLLSLRFSLESDIWSASLWGKNILDEEYYADFNPAEYAGAPFDLGSQARPA TYGVDFKYRF
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=210, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 79794; Mature: 79794
Theoretical pI: Translated: 4.09; Mature: 4.09
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRANMKTHLLCSAGLLAITAMGHSLPAIAQENDTSADEVSRTLETVTVTAQFRDQQLQD CCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHEEEEEEEEHHHHHHHHH VPNSIVAFTAQDIEDAGIRSTEDFIALTPNVSFDNSFTYLNSFVVVRGVTQINNADSPVA CCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHEEEEECHHHCCCCCCCEE IIVDGVPQNNQKQFKMPLFDVEQIEVLKGPQGSLYGRNAIGGAINIVTRQPTNEIEGFVS EEECCCCCCCCCEEECCCCCCCHHHEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHC GGLSNGSGYRMEGGISGPVIKDQLMFRLSGSYYETDGLIENAYLGRTVDTVDHDYSIRGK CCCCCCCCEEECCCCCCCCHHHEEHEEECCCEEECCCCEECCCCCCEEECCCCCEEEEEE LAYTPNDVFSLDLRAAYTDARAGAAYDAVVNSQLNPDFRSGNDSNDIFAPASNLAGITEA EEECCCCEEEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCC DILDLSGKASLDMGFATATYILGYTDLTETYRSDLDFSNPDQPTFGPFGQLGQGQNLSLD CEEECCCCCCCCCCCEEEEHEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH LLSQELRFVSPDERTFRWIAGGYYLETDRSLLTRGFLDLTGSVDQFDTGIAIIDRSEDND HHHHHHHCCCCCCCEEEEEECCEEEECCHHHHHHHHHHCCCCCHHCCCCEEEEECCCCCC NTAWALFGQAEFDLNDRTVLQLGARYDEDERNQTQGAAGPVRTRSFSAFQPKITLSYDIL CEEEEEEEEEEECCCCCEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEHHHH PDVLGYATYSTGFRSGGFNAPGVVLDSFGDETLTNYEAGLKTGFADGNGTLNIAAFSSES HHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCC EGFQFFFVDASTVSQIISNLDKVDLRGFDADFRYRVSESFTLSGGVGYTDSEIRSIGNAQ CCEEEEEEEHHHHHHHHHCCCCEECCCCCCCEEEEECCCEEECCCCCCCHHHHHHHCCHH LESYLTASGVDTDAVIGSRSPKTTDWSVSLSGQYVRPVRSGLDAVLRADYEYQGNKYWQI HHHHHHHCCCCCHHEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEECCCEEEEE DNLDVRDPVNLLSLRFSLESDIWSASLWGKNILDEEYYADFNPAEYAGAPFDLGSQARPA CCCCCCCCCCEEEEEEECCCCCEEHHHCCCCCCCHHHCCCCCCHHHCCCCCCCCCCCCCC TYGVDFKYRF EECCEEEEEC >Mature Secondary Structure MKRANMKTHLLCSAGLLAITAMGHSLPAIAQENDTSADEVSRTLETVTVTAQFRDQQLQD CCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHEEEEEEEEHHHHHHHHH VPNSIVAFTAQDIEDAGIRSTEDFIALTPNVSFDNSFTYLNSFVVVRGVTQINNADSPVA CCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHEEEEECHHHCCCCCCCEE IIVDGVPQNNQKQFKMPLFDVEQIEVLKGPQGSLYGRNAIGGAINIVTRQPTNEIEGFVS EEECCCCCCCCCEEECCCCCCCHHHEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHC GGLSNGSGYRMEGGISGPVIKDQLMFRLSGSYYETDGLIENAYLGRTVDTVDHDYSIRGK CCCCCCCCEEECCCCCCCCHHHEEHEEECCCEEECCCCEECCCCCCEEECCCCCEEEEEE LAYTPNDVFSLDLRAAYTDARAGAAYDAVVNSQLNPDFRSGNDSNDIFAPASNLAGITEA EEECCCCEEEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCC DILDLSGKASLDMGFATATYILGYTDLTETYRSDLDFSNPDQPTFGPFGQLGQGQNLSLD CEEECCCCCCCCCCCEEEEHEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH LLSQELRFVSPDERTFRWIAGGYYLETDRSLLTRGFLDLTGSVDQFDTGIAIIDRSEDND HHHHHHHCCCCCCCEEEEEECCEEEECCHHHHHHHHHHCCCCCHHCCCCEEEEECCCCCC NTAWALFGQAEFDLNDRTVLQLGARYDEDERNQTQGAAGPVRTRSFSAFQPKITLSYDIL CEEEEEEEEEEECCCCCEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEHHHH PDVLGYATYSTGFRSGGFNAPGVVLDSFGDETLTNYEAGLKTGFADGNGTLNIAAFSSES HHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCC EGFQFFFVDASTVSQIISNLDKVDLRGFDADFRYRVSESFTLSGGVGYTDSEIRSIGNAQ CCEEEEEEEHHHHHHHHHCCCCEECCCCCCCEEEEECCCEEECCCCCCCHHHHHHHCCHH LESYLTASGVDTDAVIGSRSPKTTDWSVSLSGQYVRPVRSGLDAVLRADYEYQGNKYWQI HHHHHHHCCCCCHHEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEECCCEEEEE DNLDVRDPVNLLSLRFSLESDIWSASLWGKNILDEEYYADFNPAEYAGAPFDLGSQARPA CCCCCCCCCCEEEEEEECCCCCEEHHHCCCCCCCHHHCCCCCCHHHCCCCCCCCCCCCCC TYGVDFKYRF EECCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA