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The map label for this gene is ydaM [H]

Identifier: 114799626

GI number: 114799626

Start: 54933

End: 55694

Strand: Direct

Name: ydaM [H]

Synonym: HNE_0068

Alternate gene names: 114799626

Gene position: 54933-55694 (Clockwise)

Preceding gene: 114798515

Following gene: 114799723

Centisome position: 1.48

GC content: 64.7

Gene sequence:

>762_bases
ATGCAGGTATCCAAGGCACTTCAGAAGGCTATCCGCACGGGCGTGATCACCACGGCCGCGTCGGTATTTTTCACCTTCGT
GCCTGTCTATATCTGGACCCTGATTGATAAGGTCATCGACCGGCCGTCCATCTATGCCGCGTGCATCTTCATGCCGCTGA
TCATTGCGCCGGCGTGCAGCTGGTTTGTACTGCGCGCGCAGATGCGGGCAGAGCGCCTGGCGCAGGAAAACCACCGCCTT
GCGAATGAAGACGAGCTGACCGGCCTGCCAAACCGGCGCGCCTTCTTTGCCACTGCCAGCGTGCTTCAGATGCAGGCCGA
TGCCGGGGCCGGGCAATTTTACTGCGCGATTGCGGATGTCGATAATTTCAAACGTGTGAACGATGCCCATGGCCATGAGG
CGGGCGATGGCGTGCTGATCTCCGTAGCCGGAATATTACGCAGGCTGGCCCCGCCCGGCGCCATCGTGGCGCGCCTTGGC
GGGGAAGAATTTGCGCTGGCGGGCGTCTTTGCCGATGCGCGGGCAGCGCGCGCCGCCTGCGCCGCCCTGGTGCGCGCGGT
GGCCGCCGCCGATCACAGTGCGCAGAGCCTCACCCGCCAGGTCACCATCAGCCTCGGCCTCAGCCGCGAAACCGGCCGGG
AAACCCTCTCCGCCCTCCTCAACCGCGCCGACGAAGCTCTCTACCGCGCCAAACAGGCCGGGAAAAACCGTGTGATGATG
TACGAGGACGAACCCGTTCCGCCGCTGGCGCGGGTGGGGTAG

Upstream 100 bases:

>100_bases
CGGCCATTTGCCTTCCGGAACCGGTAAAATTTCACCGGTCTTCCGGAGGCGGCTTTAAGCATGAGCTGATACGGTCTCCC
CATCGAAATGGGCGGGGCGA

Downstream 100 bases:

>100_bases
GGATGTCCCGAACCGCTCCATGTCTTTGAATAAAATGCAAAAACTACTGCCGTTAACCTCTCGTTAACCGCTTTTTTGTG
CATTCGCCTATTGGAGGCTG

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MQVSKALQKAIRTGVITTAASVFFTFVPVYIWTLIDKVIDRPSIYAACIFMPLIIAPACSWFVLRAQMRAERLAQENHRL
ANEDELTGLPNRRAFFATASVLQMQADAGAGQFYCAIADVDNFKRVNDAHGHEAGDGVLISVAGILRRLAPPGAIVARLG
GEEFALAGVFADARAARAACAALVRAVAAADHSAQSLTRQVTISLGLSRETGRETLSALLNRADEALYRAKQAGKNRVMM
YEDEPVPPLARVG

Sequences:

>Translated_253_residues
MQVSKALQKAIRTGVITTAASVFFTFVPVYIWTLIDKVIDRPSIYAACIFMPLIIAPACSWFVLRAQMRAERLAQENHRL
ANEDELTGLPNRRAFFATASVLQMQADAGAGQFYCAIADVDNFKRVNDAHGHEAGDGVLISVAGILRRLAPPGAIVARLG
GEEFALAGVFADARAARAACAALVRAVAAADHSAQSLTRQVTISLGLSRETGRETLSALLNRADEALYRAKQAGKNRVMM
YEDEPVPPLARVG
>Mature_253_residues
MQVSKALQKAIRTGVITTAASVFFTFVPVYIWTLIDKVIDRPSIYAACIFMPLIIAPACSWFVLRAQMRAERLAQENHRL
ANEDELTGLPNRRAFFATASVLQMQADAGAGQFYCAIADVDNFKRVNDAHGHEAGDGVLISVAGILRRLAPPGAIVARLG
GEEFALAGVFADARAARAACAALVRAVAAADHSAQSLTRQVTISLGLSRETGRETLSALLNRADEALYRAKQAGKNRVMM
YEDEPVPPLARVG

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=169, Percent_Identity=38.4615384615385, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=35.5029585798817, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=33.5329341317365, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788085, Length=173, Percent_Identity=33.5260115606936, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082007, Length=186, Percent_Identity=35.4838709677419, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788381, Length=165, Percent_Identity=29.0909090909091, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787802, Length=176, Percent_Identity=30.6818181818182, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787541, Length=177, Percent_Identity=33.8983050847458, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87081977, Length=106, Percent_Identity=39.622641509434, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1786584, Length=229, Percent_Identity=26.2008733624454, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788956, Length=160, Percent_Identity=33.75, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=31.6770186335404, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 27254; Mature: 27254

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVSKALQKAIRTGVITTAASVFFTFVPVYIWTLIDKVIDRPSIYAACIFMPLIIAPACS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
WFVLRAQMRAERLAQENHRLANEDELTGLPNRRAFFATASVLQMQADAGAGQFYCAIADV
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECC
DNFKRVNDAHGHEAGDGVLISVAGILRRLAPPGAIVARLGGEEFALAGVFADARAARAAC
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHH
AALVRAVAAADHSAQSLTRQVTISLGLSRETGRETLSALLNRADEALYRAKQAGKNRVMM
HHHHHHHHHCCHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
YEDEPVPPLARVG
ECCCCCCCHHCCC
>Mature Secondary Structure
MQVSKALQKAIRTGVITTAASVFFTFVPVYIWTLIDKVIDRPSIYAACIFMPLIIAPACS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
WFVLRAQMRAERLAQENHRLANEDELTGLPNRRAFFATASVLQMQADAGAGQFYCAIADV
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECC
DNFKRVNDAHGHEAGDGVLISVAGILRRLAPPGAIVARLGGEEFALAGVFADARAARAAC
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHH
AALVRAVAAADHSAQSLTRQVTISLGLSRETGRETLSALLNRADEALYRAKQAGKNRVMM
HHHHHHHHHCCHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
YEDEPVPPLARVG
ECCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]