Definition Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession NC_008358
Length 3,705,021

Click here to switch to the map view.

The map label for this gene is 114799622

Identifier: 114799622

GI number: 114799622

Start: 1927024

End: 1929675

Strand: Direct

Name: 114799622

Synonym: HNE_1863

Alternate gene names: NA

Gene position: 1927024-1929675 (Clockwise)

Preceding gene: 114799982

Following gene: 114800404

Centisome position: 52.01

GC content: 57.88

Gene sequence:

>2652_bases
ATGAAATTCAGCTCGCTGTCTCTCCGGGCACTGTTGATCGCCTCCACGGCAGTCCTTTCGCCCACTCTCGCATCGGCTCA
GACCGAGACTACCTCTGACACTTCTGCGGAGGCGGCGGCTCCCGAAGCAGAAGATCTTAAACTCAATGAGGTTGTCGTCC
TTGGCCGGTATATTCCAGAAGTGCTGCGCAGCACCTCGGAAGTCGCCGCGTTTCTGGCGCCCGAAGACCTTGCACGTCAG
GGCGATTCCGACGCTGCCGCCGCTTTGGCGCGCGTGACCGGCATCAACATCGCGGAAGGCCGCTTTGTTTATGTCCGTGG
CCTTGGGGAGCGCTATTCCGCTGCCCGGCTCAATGGCTCGCCGCTCCCCAGCCCCGAGCCACTCCAACGCGTAGTTCCAC
TTGACCTCTTCCCGACAAACATTCTCGAGAACGTACTCGTTCAGAAGACATATTCGGTGGAATATCCCGGCGAGTTCGGC
GGCGGCATAATTGATCTCCGCACCCTGAACATCCCGCAGGAAAGCTTCCTCGATCTCAGCGTGTCCGGCAGCTACAATAC
GGAAACCACCGGCAAGAACGGCCTCACCTATTACGGTTCTGACACGGACGTGCTCGGTTTTGATGATGGCACGCGCAAAC
TGCCCGGCGCCGTCCGCCAGGCAATGTCCACCGGCCTTCTCGTCTCGTCTCCGAATTTCACGGACTCCGAAATTCAGGCC
ATGGGGCAAGCCTTCACGAATGCACCGATCAACCTCATCCAAAAGAACGACAGCATCCCGCTGAACGGAAGCTATGAAGC
TTCCGGCGGCACCTCATTTGATCTCGGCAGCGCCGAGCTCGGCGTGATTGGTGTGCTCGGCTATTCCAACGACTGGCGCA
CACGCAATGCTGTTCAGGAAACCGGTCGCCTCAGCAACCAAGAGCTGATCCGCGCATCCGACTATGAGTATGTCTCGACC
GAGCAGAATATCGGCTGGGATGCCCTGTTCGGCATGGGTGTGGATTTCGGCGATGACAAGATCGACTGGACCAACCTCTA
CATCCGCCGCACCACCAAGCAGGCGTATAGCCGGGAAGGCTATAACTTCCTGTCTGACCGTGATGTCCGCAACGACCGCA
CAGCCTGGTATGAACGGGAACTGTACAGCACACAGCTGAACGGCGAACACTTCCGTGGACCCTGGACATTGAACTGGCGC
ACCGCGCTGTCGCAGACCAAGCGCGACGCACCCTATGAGCGTGAGATCAACTATATCTTCAGTGATATAGCGAATTCCTA
CATCTACGATCCTTCGGGCTCGGGCTCATCGAACACCATTGGCTTCTCTTACCTTGACGACAAGGTCATCAGTGGTGGCG
CGGACGTGAAGTACGTCCAAACCCTCTCTTCGGCGCGCGATATTGAATATTCTGCGGGTGTTGAAGCCTATCAGAACGAG
CGTACCTCTCAGACGCGCCTCTTCAGTTTCGATATCGACAATCCCCCGCTGGATTTCCTGATCCAGCAACAACGTCCGGA
TTTCCTCTTCGCAAACTACAACATCAATCCCGATGTGTTTGTATTGCGTGAGACAACATCTTCCGAAGGGGCTGCCGCCT
ATGACGCAGACCTTGAGGTCCTCGCGGCCTATGCGAAGGTTGATGCAGAAATCTTCCCGTTGATCCGGACCGCAGTCGGC
GTTCGTTTTGAAGACGCAACACAATCGACGACCCCCCTCTCGCTCCAGACATCGGCAACGCCGCCGAGCGTCCCGCCGGA
ACTGGAAAACCAGTACCTCCTGCCGGCCGGCACGCTGACCTGGAACTTCGCGGAAGATCAGCAGCTGCGTCTTGGCGCGT
CCAAGAGCATCGGCCGTCCCCAATTCCGTGAGCTGGCGCCCCAGCAATACTATGACCCGGAGAGCAGCCGTATCTTTATC
GGCAACCCCTACCTGGTCGACACAGAAATCCTGAACCTCGACGCACGCTACGAGAAATACTTCGATCGTGGTCAGGCGCT
GACTGCAGGCGTGTTCTTCAAACAGCTCGACAGGCCGGTGGAATCCATCGTCATCGAACAGAGCGCTTCAATCTTTCAGA
CCTATCTGAACGCACCCGAAGCCGTGCTGTACGGCGCCGAAATCGACATCAAGCGGGTCTTTGACAGCCCGATCCGGGGC
GCGTTCTTCGACACCAAGGAATTCCTCGTACAGGTGAACTACACCTACTCCACCTCCGAGGTAAAAGCCGGTCCCGGTGA
TGTTGTGTTTCCATTGCAGGCAGGCGGCCAGCCTCGCCCGGCAACCGAATACATCATCGATGGCACACGCCTCCAGGGCC
AGTCAGAGCATATCGGAAACCTGCAGATTGGCTGGGATGACGAAGCTGCCCGCTCGCAGCTGACCCTCCTCCTCAACTAT
GCCAGCGAGCGGATTACGGCCCGCGCGCCGTCCGGTCAGCCAGACTTCATGCAGGACCCCGGCATCAATCTTGATCTGGT
GTACAAGAAGGGCTTCGACCTGCGGGGACAAGCGTTCACCTTCGATGTCAAAGCCCGCAACCTGCTTGGCGAAGACTTCG
AGGAATATCAAAGCGGCAACGGTGGTTACATCCGGGTCAACCAGTACGACCTGGGCACCACCTTCTCCCTTGGCCTCAGC
GCCGAGTTCTAA

Upstream 100 bases:

>100_bases
GGCCAGGCCACCTGCCACTAACGCATGATTTGGCGGAGGCCGCGGTTTCCGTGGCCTCCGCCTCAATCATATCTGCAGCA
TCCATTCAGGATCTCGTCAC

Downstream 100 bases:

>100_bases
CTCTGGTTAATTTTCGCCCAACCGGAGAAGCCCGCTGAAAATAGAGGCGCAGCAAGGTATAACTGCCTGCTGCGCCTCAC
ATTTTTAGTGAACCCGCGCC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Outer Membrane Protein; NB-Dependent Receptor Protein; Nb-Dependent Receptor; Nb-Dependent Receptor Plug; LOW QUALITY PROTEIN nB-Dependent Receptor; NB-Dependent Receptor-Like Protein; NB Dependent/Ligand-Gated Channel; NB-Dependent Receptor Subfamily; NB-Dependent Receptor Plug Domain Protein; NB-Dependent Receptor Domain Protein

Number of amino acids: Translated: 883; Mature: 883

Protein sequence:

>883_residues
MKFSSLSLRALLIASTAVLSPTLASAQTETTSDTSAEAAAPEAEDLKLNEVVVLGRYIPEVLRSTSEVAAFLAPEDLARQ
GDSDAAAALARVTGINIAEGRFVYVRGLGERYSAARLNGSPLPSPEPLQRVVPLDLFPTNILENVLVQKTYSVEYPGEFG
GGIIDLRTLNIPQESFLDLSVSGSYNTETTGKNGLTYYGSDTDVLGFDDGTRKLPGAVRQAMSTGLLVSSPNFTDSEIQA
MGQAFTNAPINLIQKNDSIPLNGSYEASGGTSFDLGSAELGVIGVLGYSNDWRTRNAVQETGRLSNQELIRASDYEYVST
EQNIGWDALFGMGVDFGDDKIDWTNLYIRRTTKQAYSREGYNFLSDRDVRNDRTAWYERELYSTQLNGEHFRGPWTLNWR
TALSQTKRDAPYEREINYIFSDIANSYIYDPSGSGSSNTIGFSYLDDKVISGGADVKYVQTLSSARDIEYSAGVEAYQNE
RTSQTRLFSFDIDNPPLDFLIQQQRPDFLFANYNINPDVFVLRETTSSEGAAAYDADLEVLAAYAKVDAEIFPLIRTAVG
VRFEDATQSTTPLSLQTSATPPSVPPELENQYLLPAGTLTWNFAEDQQLRLGASKSIGRPQFRELAPQQYYDPESSRIFI
GNPYLVDTEILNLDARYEKYFDRGQALTAGVFFKQLDRPVESIVIEQSASIFQTYLNAPEAVLYGAEIDIKRVFDSPIRG
AFFDTKEFLVQVNYTYSTSEVKAGPGDVVFPLQAGGQPRPATEYIIDGTRLQGQSEHIGNLQIGWDDEAARSQLTLLLNY
ASERITARAPSGQPDFMQDPGINLDLVYKKGFDLRGQAFTFDVKARNLLGEDFEEYQSGNGGYIRVNQYDLGTTFSLGLS
AEF

Sequences:

>Translated_883_residues
MKFSSLSLRALLIASTAVLSPTLASAQTETTSDTSAEAAAPEAEDLKLNEVVVLGRYIPEVLRSTSEVAAFLAPEDLARQ
GDSDAAAALARVTGINIAEGRFVYVRGLGERYSAARLNGSPLPSPEPLQRVVPLDLFPTNILENVLVQKTYSVEYPGEFG
GGIIDLRTLNIPQESFLDLSVSGSYNTETTGKNGLTYYGSDTDVLGFDDGTRKLPGAVRQAMSTGLLVSSPNFTDSEIQA
MGQAFTNAPINLIQKNDSIPLNGSYEASGGTSFDLGSAELGVIGVLGYSNDWRTRNAVQETGRLSNQELIRASDYEYVST
EQNIGWDALFGMGVDFGDDKIDWTNLYIRRTTKQAYSREGYNFLSDRDVRNDRTAWYERELYSTQLNGEHFRGPWTLNWR
TALSQTKRDAPYEREINYIFSDIANSYIYDPSGSGSSNTIGFSYLDDKVISGGADVKYVQTLSSARDIEYSAGVEAYQNE
RTSQTRLFSFDIDNPPLDFLIQQQRPDFLFANYNINPDVFVLRETTSSEGAAAYDADLEVLAAYAKVDAEIFPLIRTAVG
VRFEDATQSTTPLSLQTSATPPSVPPELENQYLLPAGTLTWNFAEDQQLRLGASKSIGRPQFRELAPQQYYDPESSRIFI
GNPYLVDTEILNLDARYEKYFDRGQALTAGVFFKQLDRPVESIVIEQSASIFQTYLNAPEAVLYGAEIDIKRVFDSPIRG
AFFDTKEFLVQVNYTYSTSEVKAGPGDVVFPLQAGGQPRPATEYIIDGTRLQGQSEHIGNLQIGWDDEAARSQLTLLLNY
ASERITARAPSGQPDFMQDPGINLDLVYKKGFDLRGQAFTFDVKARNLLGEDFEEYQSGNGGYIRVNQYDLGTTFSLGLS
AEF
>Mature_883_residues
MKFSSLSLRALLIASTAVLSPTLASAQTETTSDTSAEAAAPEAEDLKLNEVVVLGRYIPEVLRSTSEVAAFLAPEDLARQ
GDSDAAAALARVTGINIAEGRFVYVRGLGERYSAARLNGSPLPSPEPLQRVVPLDLFPTNILENVLVQKTYSVEYPGEFG
GGIIDLRTLNIPQESFLDLSVSGSYNTETTGKNGLTYYGSDTDVLGFDDGTRKLPGAVRQAMSTGLLVSSPNFTDSEIQA
MGQAFTNAPINLIQKNDSIPLNGSYEASGGTSFDLGSAELGVIGVLGYSNDWRTRNAVQETGRLSNQELIRASDYEYVST
EQNIGWDALFGMGVDFGDDKIDWTNLYIRRTTKQAYSREGYNFLSDRDVRNDRTAWYERELYSTQLNGEHFRGPWTLNWR
TALSQTKRDAPYEREINYIFSDIANSYIYDPSGSGSSNTIGFSYLDDKVISGGADVKYVQTLSSARDIEYSAGVEAYQNE
RTSQTRLFSFDIDNPPLDFLIQQQRPDFLFANYNINPDVFVLRETTSSEGAAAYDADLEVLAAYAKVDAEIFPLIRTAVG
VRFEDATQSTTPLSLQTSATPPSVPPELENQYLLPAGTLTWNFAEDQQLRLGASKSIGRPQFRELAPQQYYDPESSRIFI
GNPYLVDTEILNLDARYEKYFDRGQALTAGVFFKQLDRPVESIVIEQSASIFQTYLNAPEAVLYGAEIDIKRVFDSPIRG
AFFDTKEFLVQVNYTYSTSEVKAGPGDVVFPLQAGGQPRPATEYIIDGTRLQGQSEHIGNLQIGWDDEAARSQLTLLLNY
ASERITARAPSGQPDFMQDPGINLDLVYKKGFDLRGQAFTFDVKARNLLGEDFEEYQSGNGGYIRVNQYDLGTTFSLGLS
AEF

Specific function: Unknown

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 97556; Mature: 97556

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFSSLSLRALLIASTAVLSPTLASAQTETTSDTSAEAAAPEAEDLKLNEVVVLGRYIPE
CCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCHHCCCCHHCCEECCEEEEHHHHHH
VLRSTSEVAAFLAPEDLARQGDSDAAAALARVTGINIAEGRFVYVRGLGERYSAARLNGS
HHHCHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCEECCCCEEEEEECCCCCCEEECCCC
PLPSPEPLQRVVPLDLFPTNILENVLVQKTYSVEYPGEFGGGIIDLRTLNIPQESFLDLS
CCCCCCHHHHHCCCCCCCHHHHHHHHHHHEEEEECCCCCCCCEEEEEEECCCHHHHEEEE
VSGSYNTETTGKNGLTYYGSDTDVLGFDDGTRKLPGAVRQAMSTGLLVSSPNFTDSEIQA
ECCCCCCCCCCCCCEEEECCCCCEEECCCCCCCCCHHHHHHHHCCEEEECCCCCHHHHHH
MGQAFTNAPINLIQKNDSIPLNGSYEASGGTSFDLGSAELGVIGVLGYSNDWRTRNAVQE
HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCHHHHHHH
TGRLSNQELIRASDYEYVSTEQNIGWDALFGMGVDFGDDKIDWTNLYIRRTTKQAYSREG
HHCCCCCHHEEECCCCEECCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEECHHHHHHCCC
YNFLSDRDVRNDRTAWYERELYSTQLNGEHFRGPWTLNWRTALSQTKRDAPYEREINYIF
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCEEEEHHHHHHHHHCCCCHHHHHHHHH
SDIANSYIYDPSGSGSSNTIGFSYLDDKVISGGADVKYVQTLSSARDIEYSAGVEAYQNE
HHHHHCEEECCCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHCCCCHHCCCHHHHCC
RTSQTRLFSFDIDNPPLDFLIQQQRPDFLFANYNINPDVFVLRETTSSEGAAAYDADLEV
CCCCEEEEEEECCCCCHHHHEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEECCCHHH
LAAYAKVDAEIFPLIRTAVGVRFEDATQSTTPLSLQTSATPPSVPPELENQYLLPAGTLT
HHHHHHHCHHHHHHHHHHHCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCEE
WNFAEDQQLRLGASKSIGRPQFRELAPQQYYDPESSRIFIGNPYLVDTEILNLDARYEKY
EECCCCCCEECCCCCCCCCCHHHHCCCHHCCCCCCCEEEECCCEEEEEEEEECCHHHHHH
FDRGQALTAGVFFKQLDRPVESIVIEQSASIFQTYLNAPEAVLYGAEIDIKRVFDSPIRG
HHCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEHHHHHCCCCCC
AFFDTKEFLVQVNYTYSTSEVKAGPGDVVFPLQAGGQPRPATEYIIDGTRLQGQSEHIGN
CCCCCCEEEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCC
LQIGWDDEAARSQLTLLLNYASERITARAPSGQPDFMQDPGINLDLVYKKGFDLRGQAFT
EEECCCCHHHHHHHHHEEEHHHHHEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEE
FDVKARNLLGEDFEEYQSGNGGYIRVNQYDLGTTFSLGLSAEF
EEEHHHHHHHCCHHHHHCCCCCEEEEEEEECCCEEEECEECCC
>Mature Secondary Structure
MKFSSLSLRALLIASTAVLSPTLASAQTETTSDTSAEAAAPEAEDLKLNEVVVLGRYIPE
CCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCHHCCCCHHCCEECCEEEEHHHHHH
VLRSTSEVAAFLAPEDLARQGDSDAAAALARVTGINIAEGRFVYVRGLGERYSAARLNGS
HHHCHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCEECCCCEEEEEECCCCCCEEECCCC
PLPSPEPLQRVVPLDLFPTNILENVLVQKTYSVEYPGEFGGGIIDLRTLNIPQESFLDLS
CCCCCCHHHHHCCCCCCCHHHHHHHHHHHEEEEECCCCCCCCEEEEEEECCCHHHHEEEE
VSGSYNTETTGKNGLTYYGSDTDVLGFDDGTRKLPGAVRQAMSTGLLVSSPNFTDSEIQA
ECCCCCCCCCCCCCEEEECCCCCEEECCCCCCCCCHHHHHHHHCCEEEECCCCCHHHHHH
MGQAFTNAPINLIQKNDSIPLNGSYEASGGTSFDLGSAELGVIGVLGYSNDWRTRNAVQE
HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCHHHHHHH
TGRLSNQELIRASDYEYVSTEQNIGWDALFGMGVDFGDDKIDWTNLYIRRTTKQAYSREG
HHCCCCCHHEEECCCCEECCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEECHHHHHHCCC
YNFLSDRDVRNDRTAWYERELYSTQLNGEHFRGPWTLNWRTALSQTKRDAPYEREINYIF
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCEEEEHHHHHHHHHCCCCHHHHHHHHH
SDIANSYIYDPSGSGSSNTIGFSYLDDKVISGGADVKYVQTLSSARDIEYSAGVEAYQNE
HHHHHCEEECCCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHCCCCHHCCCHHHHCC
RTSQTRLFSFDIDNPPLDFLIQQQRPDFLFANYNINPDVFVLRETTSSEGAAAYDADLEV
CCCCEEEEEEECCCCCHHHHEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEECCCHHH
LAAYAKVDAEIFPLIRTAVGVRFEDATQSTTPLSLQTSATPPSVPPELENQYLLPAGTLT
HHHHHHHCHHHHHHHHHHHCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCEE
WNFAEDQQLRLGASKSIGRPQFRELAPQQYYDPESSRIFIGNPYLVDTEILNLDARYEKY
EECCCCCCEECCCCCCCCCCHHHHCCCHHCCCCCCCEEEECCCEEEEEEEEECCHHHHHH
FDRGQALTAGVFFKQLDRPVESIVIEQSASIFQTYLNAPEAVLYGAEIDIKRVFDSPIRG
HHCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEHHHHHCCCCCC
AFFDTKEFLVQVNYTYSTSEVKAGPGDVVFPLQAGGQPRPATEYIIDGTRLQGQSEHIGN
CCCCCCEEEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCC
LQIGWDDEAARSQLTLLLNYASERITARAPSGQPDFMQDPGINLDLVYKKGFDLRGQAFT
EEECCCCHHHHHHHHHEEEHHHHHEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEE
FDVKARNLLGEDFEEYQSGNGGYIRVNQYDLGTTFSLGLSAEF
EEEHHHHHHHCCHHHHHCCCCCEEEEEEEECCCEEEECEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA