| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is 114799622
Identifier: 114799622
GI number: 114799622
Start: 1927024
End: 1929675
Strand: Direct
Name: 114799622
Synonym: HNE_1863
Alternate gene names: NA
Gene position: 1927024-1929675 (Clockwise)
Preceding gene: 114799982
Following gene: 114800404
Centisome position: 52.01
GC content: 57.88
Gene sequence:
>2652_bases ATGAAATTCAGCTCGCTGTCTCTCCGGGCACTGTTGATCGCCTCCACGGCAGTCCTTTCGCCCACTCTCGCATCGGCTCA GACCGAGACTACCTCTGACACTTCTGCGGAGGCGGCGGCTCCCGAAGCAGAAGATCTTAAACTCAATGAGGTTGTCGTCC TTGGCCGGTATATTCCAGAAGTGCTGCGCAGCACCTCGGAAGTCGCCGCGTTTCTGGCGCCCGAAGACCTTGCACGTCAG GGCGATTCCGACGCTGCCGCCGCTTTGGCGCGCGTGACCGGCATCAACATCGCGGAAGGCCGCTTTGTTTATGTCCGTGG CCTTGGGGAGCGCTATTCCGCTGCCCGGCTCAATGGCTCGCCGCTCCCCAGCCCCGAGCCACTCCAACGCGTAGTTCCAC TTGACCTCTTCCCGACAAACATTCTCGAGAACGTACTCGTTCAGAAGACATATTCGGTGGAATATCCCGGCGAGTTCGGC GGCGGCATAATTGATCTCCGCACCCTGAACATCCCGCAGGAAAGCTTCCTCGATCTCAGCGTGTCCGGCAGCTACAATAC GGAAACCACCGGCAAGAACGGCCTCACCTATTACGGTTCTGACACGGACGTGCTCGGTTTTGATGATGGCACGCGCAAAC TGCCCGGCGCCGTCCGCCAGGCAATGTCCACCGGCCTTCTCGTCTCGTCTCCGAATTTCACGGACTCCGAAATTCAGGCC ATGGGGCAAGCCTTCACGAATGCACCGATCAACCTCATCCAAAAGAACGACAGCATCCCGCTGAACGGAAGCTATGAAGC TTCCGGCGGCACCTCATTTGATCTCGGCAGCGCCGAGCTCGGCGTGATTGGTGTGCTCGGCTATTCCAACGACTGGCGCA CACGCAATGCTGTTCAGGAAACCGGTCGCCTCAGCAACCAAGAGCTGATCCGCGCATCCGACTATGAGTATGTCTCGACC GAGCAGAATATCGGCTGGGATGCCCTGTTCGGCATGGGTGTGGATTTCGGCGATGACAAGATCGACTGGACCAACCTCTA CATCCGCCGCACCACCAAGCAGGCGTATAGCCGGGAAGGCTATAACTTCCTGTCTGACCGTGATGTCCGCAACGACCGCA CAGCCTGGTATGAACGGGAACTGTACAGCACACAGCTGAACGGCGAACACTTCCGTGGACCCTGGACATTGAACTGGCGC ACCGCGCTGTCGCAGACCAAGCGCGACGCACCCTATGAGCGTGAGATCAACTATATCTTCAGTGATATAGCGAATTCCTA CATCTACGATCCTTCGGGCTCGGGCTCATCGAACACCATTGGCTTCTCTTACCTTGACGACAAGGTCATCAGTGGTGGCG CGGACGTGAAGTACGTCCAAACCCTCTCTTCGGCGCGCGATATTGAATATTCTGCGGGTGTTGAAGCCTATCAGAACGAG CGTACCTCTCAGACGCGCCTCTTCAGTTTCGATATCGACAATCCCCCGCTGGATTTCCTGATCCAGCAACAACGTCCGGA TTTCCTCTTCGCAAACTACAACATCAATCCCGATGTGTTTGTATTGCGTGAGACAACATCTTCCGAAGGGGCTGCCGCCT ATGACGCAGACCTTGAGGTCCTCGCGGCCTATGCGAAGGTTGATGCAGAAATCTTCCCGTTGATCCGGACCGCAGTCGGC GTTCGTTTTGAAGACGCAACACAATCGACGACCCCCCTCTCGCTCCAGACATCGGCAACGCCGCCGAGCGTCCCGCCGGA ACTGGAAAACCAGTACCTCCTGCCGGCCGGCACGCTGACCTGGAACTTCGCGGAAGATCAGCAGCTGCGTCTTGGCGCGT CCAAGAGCATCGGCCGTCCCCAATTCCGTGAGCTGGCGCCCCAGCAATACTATGACCCGGAGAGCAGCCGTATCTTTATC GGCAACCCCTACCTGGTCGACACAGAAATCCTGAACCTCGACGCACGCTACGAGAAATACTTCGATCGTGGTCAGGCGCT GACTGCAGGCGTGTTCTTCAAACAGCTCGACAGGCCGGTGGAATCCATCGTCATCGAACAGAGCGCTTCAATCTTTCAGA CCTATCTGAACGCACCCGAAGCCGTGCTGTACGGCGCCGAAATCGACATCAAGCGGGTCTTTGACAGCCCGATCCGGGGC GCGTTCTTCGACACCAAGGAATTCCTCGTACAGGTGAACTACACCTACTCCACCTCCGAGGTAAAAGCCGGTCCCGGTGA TGTTGTGTTTCCATTGCAGGCAGGCGGCCAGCCTCGCCCGGCAACCGAATACATCATCGATGGCACACGCCTCCAGGGCC AGTCAGAGCATATCGGAAACCTGCAGATTGGCTGGGATGACGAAGCTGCCCGCTCGCAGCTGACCCTCCTCCTCAACTAT GCCAGCGAGCGGATTACGGCCCGCGCGCCGTCCGGTCAGCCAGACTTCATGCAGGACCCCGGCATCAATCTTGATCTGGT GTACAAGAAGGGCTTCGACCTGCGGGGACAAGCGTTCACCTTCGATGTCAAAGCCCGCAACCTGCTTGGCGAAGACTTCG AGGAATATCAAAGCGGCAACGGTGGTTACATCCGGGTCAACCAGTACGACCTGGGCACCACCTTCTCCCTTGGCCTCAGC GCCGAGTTCTAA
Upstream 100 bases:
>100_bases GGCCAGGCCACCTGCCACTAACGCATGATTTGGCGGAGGCCGCGGTTTCCGTGGCCTCCGCCTCAATCATATCTGCAGCA TCCATTCAGGATCTCGTCAC
Downstream 100 bases:
>100_bases CTCTGGTTAATTTTCGCCCAACCGGAGAAGCCCGCTGAAAATAGAGGCGCAGCAAGGTATAACTGCCTGCTGCGCCTCAC ATTTTTAGTGAACCCGCGCC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Outer Membrane Protein; NB-Dependent Receptor Protein; Nb-Dependent Receptor; Nb-Dependent Receptor Plug; LOW QUALITY PROTEIN nB-Dependent Receptor; NB-Dependent Receptor-Like Protein; NB Dependent/Ligand-Gated Channel; NB-Dependent Receptor Subfamily; NB-Dependent Receptor Plug Domain Protein; NB-Dependent Receptor Domain Protein
Number of amino acids: Translated: 883; Mature: 883
Protein sequence:
>883_residues MKFSSLSLRALLIASTAVLSPTLASAQTETTSDTSAEAAAPEAEDLKLNEVVVLGRYIPEVLRSTSEVAAFLAPEDLARQ GDSDAAAALARVTGINIAEGRFVYVRGLGERYSAARLNGSPLPSPEPLQRVVPLDLFPTNILENVLVQKTYSVEYPGEFG GGIIDLRTLNIPQESFLDLSVSGSYNTETTGKNGLTYYGSDTDVLGFDDGTRKLPGAVRQAMSTGLLVSSPNFTDSEIQA MGQAFTNAPINLIQKNDSIPLNGSYEASGGTSFDLGSAELGVIGVLGYSNDWRTRNAVQETGRLSNQELIRASDYEYVST EQNIGWDALFGMGVDFGDDKIDWTNLYIRRTTKQAYSREGYNFLSDRDVRNDRTAWYERELYSTQLNGEHFRGPWTLNWR TALSQTKRDAPYEREINYIFSDIANSYIYDPSGSGSSNTIGFSYLDDKVISGGADVKYVQTLSSARDIEYSAGVEAYQNE RTSQTRLFSFDIDNPPLDFLIQQQRPDFLFANYNINPDVFVLRETTSSEGAAAYDADLEVLAAYAKVDAEIFPLIRTAVG VRFEDATQSTTPLSLQTSATPPSVPPELENQYLLPAGTLTWNFAEDQQLRLGASKSIGRPQFRELAPQQYYDPESSRIFI GNPYLVDTEILNLDARYEKYFDRGQALTAGVFFKQLDRPVESIVIEQSASIFQTYLNAPEAVLYGAEIDIKRVFDSPIRG AFFDTKEFLVQVNYTYSTSEVKAGPGDVVFPLQAGGQPRPATEYIIDGTRLQGQSEHIGNLQIGWDDEAARSQLTLLLNY ASERITARAPSGQPDFMQDPGINLDLVYKKGFDLRGQAFTFDVKARNLLGEDFEEYQSGNGGYIRVNQYDLGTTFSLGLS AEF
Sequences:
>Translated_883_residues MKFSSLSLRALLIASTAVLSPTLASAQTETTSDTSAEAAAPEAEDLKLNEVVVLGRYIPEVLRSTSEVAAFLAPEDLARQ GDSDAAAALARVTGINIAEGRFVYVRGLGERYSAARLNGSPLPSPEPLQRVVPLDLFPTNILENVLVQKTYSVEYPGEFG GGIIDLRTLNIPQESFLDLSVSGSYNTETTGKNGLTYYGSDTDVLGFDDGTRKLPGAVRQAMSTGLLVSSPNFTDSEIQA MGQAFTNAPINLIQKNDSIPLNGSYEASGGTSFDLGSAELGVIGVLGYSNDWRTRNAVQETGRLSNQELIRASDYEYVST EQNIGWDALFGMGVDFGDDKIDWTNLYIRRTTKQAYSREGYNFLSDRDVRNDRTAWYERELYSTQLNGEHFRGPWTLNWR TALSQTKRDAPYEREINYIFSDIANSYIYDPSGSGSSNTIGFSYLDDKVISGGADVKYVQTLSSARDIEYSAGVEAYQNE RTSQTRLFSFDIDNPPLDFLIQQQRPDFLFANYNINPDVFVLRETTSSEGAAAYDADLEVLAAYAKVDAEIFPLIRTAVG VRFEDATQSTTPLSLQTSATPPSVPPELENQYLLPAGTLTWNFAEDQQLRLGASKSIGRPQFRELAPQQYYDPESSRIFI GNPYLVDTEILNLDARYEKYFDRGQALTAGVFFKQLDRPVESIVIEQSASIFQTYLNAPEAVLYGAEIDIKRVFDSPIRG AFFDTKEFLVQVNYTYSTSEVKAGPGDVVFPLQAGGQPRPATEYIIDGTRLQGQSEHIGNLQIGWDDEAARSQLTLLLNY ASERITARAPSGQPDFMQDPGINLDLVYKKGFDLRGQAFTFDVKARNLLGEDFEEYQSGNGGYIRVNQYDLGTTFSLGLS AEF >Mature_883_residues MKFSSLSLRALLIASTAVLSPTLASAQTETTSDTSAEAAAPEAEDLKLNEVVVLGRYIPEVLRSTSEVAAFLAPEDLARQ GDSDAAAALARVTGINIAEGRFVYVRGLGERYSAARLNGSPLPSPEPLQRVVPLDLFPTNILENVLVQKTYSVEYPGEFG GGIIDLRTLNIPQESFLDLSVSGSYNTETTGKNGLTYYGSDTDVLGFDDGTRKLPGAVRQAMSTGLLVSSPNFTDSEIQA MGQAFTNAPINLIQKNDSIPLNGSYEASGGTSFDLGSAELGVIGVLGYSNDWRTRNAVQETGRLSNQELIRASDYEYVST EQNIGWDALFGMGVDFGDDKIDWTNLYIRRTTKQAYSREGYNFLSDRDVRNDRTAWYERELYSTQLNGEHFRGPWTLNWR TALSQTKRDAPYEREINYIFSDIANSYIYDPSGSGSSNTIGFSYLDDKVISGGADVKYVQTLSSARDIEYSAGVEAYQNE RTSQTRLFSFDIDNPPLDFLIQQQRPDFLFANYNINPDVFVLRETTSSEGAAAYDADLEVLAAYAKVDAEIFPLIRTAVG VRFEDATQSTTPLSLQTSATPPSVPPELENQYLLPAGTLTWNFAEDQQLRLGASKSIGRPQFRELAPQQYYDPESSRIFI GNPYLVDTEILNLDARYEKYFDRGQALTAGVFFKQLDRPVESIVIEQSASIFQTYLNAPEAVLYGAEIDIKRVFDSPIRG AFFDTKEFLVQVNYTYSTSEVKAGPGDVVFPLQAGGQPRPATEYIIDGTRLQGQSEHIGNLQIGWDDEAARSQLTLLLNY ASERITARAPSGQPDFMQDPGINLDLVYKKGFDLRGQAFTFDVKARNLLGEDFEEYQSGNGGYIRVNQYDLGTTFSLGLS AEF
Specific function: Unknown
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 97556; Mature: 97556
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFSSLSLRALLIASTAVLSPTLASAQTETTSDTSAEAAAPEAEDLKLNEVVVLGRYIPE CCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCHHCCCCHHCCEECCEEEEHHHHHH VLRSTSEVAAFLAPEDLARQGDSDAAAALARVTGINIAEGRFVYVRGLGERYSAARLNGS HHHCHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCEECCCCEEEEEECCCCCCEEECCCC PLPSPEPLQRVVPLDLFPTNILENVLVQKTYSVEYPGEFGGGIIDLRTLNIPQESFLDLS CCCCCCHHHHHCCCCCCCHHHHHHHHHHHEEEEECCCCCCCCEEEEEEECCCHHHHEEEE VSGSYNTETTGKNGLTYYGSDTDVLGFDDGTRKLPGAVRQAMSTGLLVSSPNFTDSEIQA ECCCCCCCCCCCCCEEEECCCCCEEECCCCCCCCCHHHHHHHHCCEEEECCCCCHHHHHH MGQAFTNAPINLIQKNDSIPLNGSYEASGGTSFDLGSAELGVIGVLGYSNDWRTRNAVQE HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCHHHHHHH TGRLSNQELIRASDYEYVSTEQNIGWDALFGMGVDFGDDKIDWTNLYIRRTTKQAYSREG HHCCCCCHHEEECCCCEECCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEECHHHHHHCCC YNFLSDRDVRNDRTAWYERELYSTQLNGEHFRGPWTLNWRTALSQTKRDAPYEREINYIF CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCEEEEHHHHHHHHHCCCCHHHHHHHHH SDIANSYIYDPSGSGSSNTIGFSYLDDKVISGGADVKYVQTLSSARDIEYSAGVEAYQNE HHHHHCEEECCCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHCCCCHHCCCHHHHCC RTSQTRLFSFDIDNPPLDFLIQQQRPDFLFANYNINPDVFVLRETTSSEGAAAYDADLEV CCCCEEEEEEECCCCCHHHHEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEECCCHHH LAAYAKVDAEIFPLIRTAVGVRFEDATQSTTPLSLQTSATPPSVPPELENQYLLPAGTLT HHHHHHHCHHHHHHHHHHHCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCEE WNFAEDQQLRLGASKSIGRPQFRELAPQQYYDPESSRIFIGNPYLVDTEILNLDARYEKY EECCCCCCEECCCCCCCCCCHHHHCCCHHCCCCCCCEEEECCCEEEEEEEEECCHHHHHH FDRGQALTAGVFFKQLDRPVESIVIEQSASIFQTYLNAPEAVLYGAEIDIKRVFDSPIRG HHCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEHHHHHCCCCCC AFFDTKEFLVQVNYTYSTSEVKAGPGDVVFPLQAGGQPRPATEYIIDGTRLQGQSEHIGN CCCCCCEEEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCC LQIGWDDEAARSQLTLLLNYASERITARAPSGQPDFMQDPGINLDLVYKKGFDLRGQAFT EEECCCCHHHHHHHHHEEEHHHHHEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEE FDVKARNLLGEDFEEYQSGNGGYIRVNQYDLGTTFSLGLSAEF EEEHHHHHHHCCHHHHHCCCCCEEEEEEEECCCEEEECEECCC >Mature Secondary Structure MKFSSLSLRALLIASTAVLSPTLASAQTETTSDTSAEAAAPEAEDLKLNEVVVLGRYIPE CCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCHHCCCCHHCCEECCEEEEHHHHHH VLRSTSEVAAFLAPEDLARQGDSDAAAALARVTGINIAEGRFVYVRGLGERYSAARLNGS HHHCHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCEECCCCEEEEEECCCCCCEEECCCC PLPSPEPLQRVVPLDLFPTNILENVLVQKTYSVEYPGEFGGGIIDLRTLNIPQESFLDLS CCCCCCHHHHHCCCCCCCHHHHHHHHHHHEEEEECCCCCCCCEEEEEEECCCHHHHEEEE VSGSYNTETTGKNGLTYYGSDTDVLGFDDGTRKLPGAVRQAMSTGLLVSSPNFTDSEIQA ECCCCCCCCCCCCCEEEECCCCCEEECCCCCCCCCHHHHHHHHCCEEEECCCCCHHHHHH MGQAFTNAPINLIQKNDSIPLNGSYEASGGTSFDLGSAELGVIGVLGYSNDWRTRNAVQE HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCHHHHHHH TGRLSNQELIRASDYEYVSTEQNIGWDALFGMGVDFGDDKIDWTNLYIRRTTKQAYSREG HHCCCCCHHEEECCCCEECCCCCCCHHHHHCCCCCCCCCCEEEEEEEEEECHHHHHHCCC YNFLSDRDVRNDRTAWYERELYSTQLNGEHFRGPWTLNWRTALSQTKRDAPYEREINYIF CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCEEEEHHHHHHHHHCCCCHHHHHHHHH SDIANSYIYDPSGSGSSNTIGFSYLDDKVISGGADVKYVQTLSSARDIEYSAGVEAYQNE HHHHHCEEECCCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHCCCCHHCCCHHHHCC RTSQTRLFSFDIDNPPLDFLIQQQRPDFLFANYNINPDVFVLRETTSSEGAAAYDADLEV CCCCEEEEEEECCCCCHHHHEECCCCCEEEEECCCCCCEEEEEECCCCCCCEEECCCHHH LAAYAKVDAEIFPLIRTAVGVRFEDATQSTTPLSLQTSATPPSVPPELENQYLLPAGTLT HHHHHHHCHHHHHHHHHHHCCEECCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCEE WNFAEDQQLRLGASKSIGRPQFRELAPQQYYDPESSRIFIGNPYLVDTEILNLDARYEKY EECCCCCCEECCCCCCCCCCHHHHCCCHHCCCCCCCEEEECCCEEEEEEEEECCHHHHHH FDRGQALTAGVFFKQLDRPVESIVIEQSASIFQTYLNAPEAVLYGAEIDIKRVFDSPIRG HHCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEHHHHHCCCCCC AFFDTKEFLVQVNYTYSTSEVKAGPGDVVFPLQAGGQPRPATEYIIDGTRLQGQSEHIGN CCCCCCEEEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCC LQIGWDDEAARSQLTLLLNYASERITARAPSGQPDFMQDPGINLDLVYKKGFDLRGQAFT EEECCCCHHHHHHHHHEEEHHHHHEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEE FDVKARNLLGEDFEEYQSGNGGYIRVNQYDLGTTFSLGLSAEF EEEHHHHHHHCCHHHHHCCCCCEEEEEEEECCCEEEECEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA