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The map label for this gene is rbfA

Identifier: 114799473

GI number: 114799473

Start: 104435

End: 104842

Strand: Direct

Name: rbfA

Synonym: HNE_0115

Alternate gene names: 114799473

Gene position: 104435-104842 (Clockwise)

Preceding gene: 114797688

Following gene: 114800142

Centisome position: 2.82

GC content: 62.75

Gene sequence:

>408_bases
ATGGCCCGCCGTCAGACACCTCCAGGACTTCCTTCCCAGCGCCAGTTGCGCGCTGGGGAGATTGTCCGCCACGCCCTCGC
CGAGATCATCTCGCGTGAGGACTTTCGCGATCCCGATCTCAGCAATGTCATCGTCACGGTGGGCGAAGTGCGCTGCTCGC
CCGATCTCAAGCATGCGAACATCTTCGTGACGCCTCTGGGGGATGATTCCGAGGAGGGGCGCAAGCGGCTTGCCGATGCC
CTGACCCGTGCGAAGGGTTTCCTGCGCACGCGCCTTGGCCGCGAGATTGAACTGAAATTCACGCCGGAGCTGCACTTCAT
TGCGGACTCCTCCTATGACGAAGCCACGGCGATAGACCGGCTGCTGAACGATCCGCGGGTTCGCCGCGATGTCGAAAGCG
AAGGCTGA

Upstream 100 bases:

>100_bases
CGGCATGGCGTTCGAACGCTATGACGACATCCGCGTCGGCGACAAGATCGAGTGCTTCCAGGTCGAGGAAATCGCAAGGA
CGCTTGCGTAACACCCCGAT

Downstream 100 bases:

>100_bases
GGGCAGGCGGGCGCCGTTTTTCTGCCTTTTTGCTTTGTCATTTGACAGGACGGGTCGGCCCTGCCAGCCCTTCCCATAGG
GTAATCGGGGCTCAGAATGG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MARRQTPPGLPSQRQLRAGEIVRHALAEIISREDFRDPDLSNVIVTVGEVRCSPDLKHANIFVTPLGDDSEEGRKRLADA
LTRAKGFLRTRLGREIELKFTPELHFIADSSYDEATAIDRLLNDPRVRRDVESEG

Sequences:

>Translated_135_residues
MARRQTPPGLPSQRQLRAGEIVRHALAEIISREDFRDPDLSNVIVTVGEVRCSPDLKHANIFVTPLGDDSEEGRKRLADA
LTRAKGFLRTRLGREIELKFTPELHFIADSSYDEATAIDRLLNDPRVRRDVESEG
>Mature_134_residues
ARRQTPPGLPSQRQLRAGEIVRHALAEIISREDFRDPDLSNVIVTVGEVRCSPDLKHANIFVTPLGDDSEEGRKRLADAL
TRAKGFLRTRLGREIELKFTPELHFIADSSYDEATAIDRLLNDPRVRRDVESEG

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=107, Percent_Identity=35.5140186915888, Blast_Score=63, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_HYPNA (Q0C5Z4)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_758849.1
- ProteinModelPortal:   Q0C5Z4
- STRING:   Q0C5Z4
- GeneID:   4290054
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_0115
- NMPDR:   fig|228405.5.peg.113
- TIGR:   HNE_0115
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   LRQMKYM
- PhylomeDB:   Q0C5Z4
- ProtClustDB:   CLSK777785
- BioCyc:   HNEP81032:HNE_0115-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15246; Mature: 15115

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRQTPPGLPSQRQLRAGEIVRHALAEIISREDFRDPDLSNVIVTVGEVRCSPDLKHAN
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCCCE
IFVTPLGDDSEEGRKRLADALTRAKGFLRTRLGREIELKFTPELHFIADSSYDEATAIDR
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCCHHHHHHH
LLNDPRVRRDVESEG
HHCCHHHHHCCCCCC
>Mature Secondary Structure 
ARRQTPPGLPSQRQLRAGEIVRHALAEIISREDFRDPDLSNVIVTVGEVRCSPDLKHAN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCCCE
IFVTPLGDDSEEGRKRLADALTRAKGFLRTRLGREIELKFTPELHFIADSSYDEATAIDR
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCCCHHHHHHH
LLNDPRVRRDVESEG
HHCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA