Click here to switch to the map view.

The map label for this gene is hofQ [C]

Identifier: 114799407

GI number: 114799407

Start: 1161490

End: 1162788

Strand: Direct

Name: hofQ [C]

Synonym: HNE_1150

Alternate gene names: 114799407

Gene position: 1161490-1162788 (Clockwise)

Preceding gene: 114797097

Following gene: 114798599

Centisome position: 31.35

GC content: 61.28

Gene sequence:

>1299_bases
ATGTCTGGTATTCGCCGTATACTGATAGCAAGCTGTCTGGCCGCTCTGTGCGCTCAACCCGCGCTGGCCTGGACGCAGCG
CTCGGCGCCTGCGGGCGCAGATCAGCTGGAGCTGCGCCGGGGTAAATCGGCCGTCGTGGAGGCCGATGCGGCCTTTGCAA
CGATTGTGGTGGCCGATCCGGAAATTGCCGAAGCGATGCCGACCTCGAACCGGTCTTTCTTTGTGCGTGGCAAGAAGCCG
GGCGGCACGACGGTGCTGATCTATGACGAGGCCGGAGCCATTGCCGAGCTGATTGAAGTGGAAGTGAAGCTCGGTCTGGA
TGAGCTGCGCGGCGACCTTGGGCGCCTTCTGCCGGGCGAGATCATTGATGTGTATGCGGTGCATGACGGGGTGTATCTTG
ACGGCAAGGTAACGACGGCCGCCGCCGCCGATATGGCGTTGCAGCTGGCTGAGCGGCATGTTCCCGGCGGGGTGGCCAAC
GGGCTTTCTGTAGGCCAGAGTCAACAGGTGATGCTGGAAGTACGATTTCTGGAGGCAAGCCGGAAAGCCGTGCGCGAGAT
CGGCTTTGGCAACACGATTGACGCCAATGATGTGGTGGCCGGGACAGAGGGCGGGACGGTTTCCGGCCTGCTTGAAAAAA
CTCTTGCCGTATTCACCAATGTGGGCGGAGAAAATATTGATGTCAGCCTTCGGGCGCTCGAAGAGAAGGGCGTGATCCGG
ACACTGGCCGAGCCCAATCTGGTGGCGCTGTCGGGCGATACGGCGAGCTTTCTGGCGGGCGGGGAATTTCCCATTCCGGT
TTCGAGCCGGGACAATGAGGTGACCGTCGAGTTCAAGAAGTTCGGGGTGAGCCTCGACTTTACACCAACGGTTCTGGGCG
ACGGGCTGGTGAACCTCCGTGTGCGGCCGGAAGTTTCCGCGCTGGACCGGGGCAACGGCATTCGGGCCTCGAACATCGAC
ATTCCGGGTGTCTCCGTGCGCAGGGCCGATACGACGGTTGAGCTGCATGATGGGCAGGCGTTTGCGATCGCCGGGCTGTT
GCAGAACAATTACACCAATGATGTGCGCCAGACGCCGTGGCTCGGCAATGTGCCGATCCTCGGCTCACTGTTCTCGTCCA
AGCGCTATCAGCGCAACGAGACCGAGCTGGTGATCATCGTGACGCCGCGCCTGGTTCAGCCTTTCTCGCATCCAGAAGCC
ATCGTTTCGCCGCTGGATTCGGTCAGCGAGCCGACCGAAGCAGAGCTTTTCCTGCTGGGCAAGACGACCAGCGATCTCAC
CACAAATACAGGGGACTGA

Upstream 100 bases:

>100_bases
CCGCGACCGTGCGGGTGATTCATGGATCGGAAGATGCGCAGGTTTCGACGCCAGTGGCGCCGCCTGCGGCCCCGGTCAAG
CTTACTGAAGGAGCCAGCTG

Downstream 100 bases:

>100_bases
CATATGACCAGAGCAATCAGGGTCTCACTGATAGCGGCGGGCTGCCTGCTTTCGGGGTGTGCGTCCTATGACCGGCAGGA
CCAGTATGTGTTGGGCGCGG

Product: type II/III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 431

Protein sequence:

>432_residues
MSGIRRILIASCLAALCAQPALAWTQRSAPAGADQLELRRGKSAVVEADAAFATIVVADPEIAEAMPTSNRSFFVRGKKP
GGTTVLIYDEAGAIAELIEVEVKLGLDELRGDLGRLLPGEIIDVYAVHDGVYLDGKVTTAAAADMALQLAERHVPGGVAN
GLSVGQSQQVMLEVRFLEASRKAVREIGFGNTIDANDVVAGTEGGTVSGLLEKTLAVFTNVGGENIDVSLRALEEKGVIR
TLAEPNLVALSGDTASFLAGGEFPIPVSSRDNEVTVEFKKFGVSLDFTPTVLGDGLVNLRVRPEVSALDRGNGIRASNID
IPGVSVRRADTTVELHDGQAFAIAGLLQNNYTNDVRQTPWLGNVPILGSLFSSKRYQRNETELVIIVTPRLVQPFSHPEA
IVSPLDSVSEPTEAELFLLGKTTSDLTTNTGD

Sequences:

>Translated_432_residues
MSGIRRILIASCLAALCAQPALAWTQRSAPAGADQLELRRGKSAVVEADAAFATIVVADPEIAEAMPTSNRSFFVRGKKP
GGTTVLIYDEAGAIAELIEVEVKLGLDELRGDLGRLLPGEIIDVYAVHDGVYLDGKVTTAAAADMALQLAERHVPGGVAN
GLSVGQSQQVMLEVRFLEASRKAVREIGFGNTIDANDVVAGTEGGTVSGLLEKTLAVFTNVGGENIDVSLRALEEKGVIR
TLAEPNLVALSGDTASFLAGGEFPIPVSSRDNEVTVEFKKFGVSLDFTPTVLGDGLVNLRVRPEVSALDRGNGIRASNID
IPGVSVRRADTTVELHDGQAFAIAGLLQNNYTNDVRQTPWLGNVPILGSLFSSKRYQRNETELVIIVTPRLVQPFSHPEA
IVSPLDSVSEPTEAELFLLGKTTSDLTTNTGD
>Mature_431_residues
SGIRRILIASCLAALCAQPALAWTQRSAPAGADQLELRRGKSAVVEADAAFATIVVADPEIAEAMPTSNRSFFVRGKKPG
GTTVLIYDEAGAIAELIEVEVKLGLDELRGDLGRLLPGEIIDVYAVHDGVYLDGKVTTAAAADMALQLAERHVPGGVANG
LSVGQSQQVMLEVRFLEASRKAVREIGFGNTIDANDVVAGTEGGTVSGLLEKTLAVFTNVGGENIDVSLRALEEKGVIRT
LAEPNLVALSGDTASFLAGGEFPIPVSSRDNEVTVEFKKFGVSLDFTPTVLGDGLVNLRVRPEVSALDRGNGIRASNIDI
PGVSVRRADTTVELHDGQAFAIAGLLQNNYTNDVRQTPWLGNVPILGSLFSSKRYQRNETELVIIVTPRLVQPFSHPEAI
VSPLDSVSEPTEAELFLLGKTTSDLTTNTGD

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=232, Percent_Identity=30.1724137931034, Blast_Score=92, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 45767; Mature: 45636

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGIRRILIASCLAALCAQPALAWTQRSAPAGADQLELRRGKSAVVEADAAFATIVVADP
CCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHCCCCEEEECCCCEEEEEEECC
EIAEAMPTSNRSFFVRGKKPGGTTVLIYDEAGAIAELIEVEVKLGLDELRGDLGRLLPGE
HHHHHCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCC
IIDVYAVHDGVYLDGKVTTAAAADMALQLAERHVPGGVANGLSVGQSQQVMLEVRFLEAS
EEEEEEEECCEEECCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHH
RKAVREIGFGNTIDANDVVAGTEGGTVSGLLEKTLAVFTNVGGENIDVSLRALEEKGVIR
HHHHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEE
TLAEPNLVALSGDTASFLAGGEFPIPVSSRDNEVTVEFKKFGVSLDFTPTVLGDGLVNLR
ECCCCCEEEEECCCHHHCCCCCCCCCCCCCCCEEEEEEHHHCEEECCCHHHHCCCEEEEE
VRPEVSALDRGNGIRASNIDIPGVSVRRADTTVELHDGQAFAIAGLLQNNYTNDVRQTPW
ECCCHHHHCCCCCEEECCCCCCCCEEEECCCEEEEECCCEEEEEEHHHCCCCCCHHCCCC
LGNVPILGSLFSSKRYQRNETELVIIVTPRLVQPFSHPEAIVSPLDSVSEPTEAELFLLG
CCCCCHHHHHHHHHCCCCCCCEEEEEECCHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEE
KTTSDLTTNTGD
CCCCCCCCCCCC
>Mature Secondary Structure 
SGIRRILIASCLAALCAQPALAWTQRSAPAGADQLELRRGKSAVVEADAAFATIVVADP
CHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHCCCCEEEECCCCEEEEEEECC
EIAEAMPTSNRSFFVRGKKPGGTTVLIYDEAGAIAELIEVEVKLGLDELRGDLGRLLPGE
HHHHHCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCC
IIDVYAVHDGVYLDGKVTTAAAADMALQLAERHVPGGVANGLSVGQSQQVMLEVRFLEAS
EEEEEEEECCEEECCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHH
RKAVREIGFGNTIDANDVVAGTEGGTVSGLLEKTLAVFTNVGGENIDVSLRALEEKGVIR
HHHHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEE
TLAEPNLVALSGDTASFLAGGEFPIPVSSRDNEVTVEFKKFGVSLDFTPTVLGDGLVNLR
ECCCCCEEEEECCCHHHCCCCCCCCCCCCCCCEEEEEEHHHCEEECCCHHHHCCCEEEEE
VRPEVSALDRGNGIRASNIDIPGVSVRRADTTVELHDGQAFAIAGLLQNNYTNDVRQTPW
ECCCHHHHCCCCCEEECCCCCCCCEEEECCCEEEEECCCEEEEEEHHHCCCCCCHHCCCC
LGNVPILGSLFSSKRYQRNETELVIIVTPRLVQPFSHPEAIVSPLDSVSEPTEAELFLLG
CCCCCHHHHHHHHHCCCCCCCEEEEEECCHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEE
KTTSDLTTNTGD
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]