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The map label for this gene is flgD [H]

Identifier: 114799290

GI number: 114799290

Start: 249425

End: 250075

Strand: Reverse

Name: flgD [H]

Synonym: HNE_0260

Alternate gene names: 114799290

Gene position: 250075-249425 (Counterclockwise)

Preceding gene: 114799132

Following gene: 114797285

Centisome position: 6.75

GC content: 55.45

Gene sequence:

>651_bases
ATGACCACTGTAACCAATAATACGGGCACGACCCCTCAGACGACTCCCCAGACCACCAGCACAGGTATCGGCAGCGAATA
TAACAGCTTCATCAAACTGTTGACCGCGCAGGTGCGAAATCAGGACCCGATGTCTCCGATGGACTCCACGCAGTTCGTCG
AACAGCTTGCGACCTTCTCAAGCCTTGAACAGCTGGTGAACTCCAACACCGCACTCTCCAGCATTGCCTCGATGATCGGT
GATCTGAACGGGCTGATGGCCAGCCAGTGGCTGGGCGAAGACGTAACATTTGCCTCTTCCTTCATGCCCTATACCGGCAG
CGAGGCCACTTTCTCTTATGAAGCGCCTGAAGGCGCCACCAAGAGCACGCTGACCGTCAAGGATTCAGAGGGCAACGCTG
TCTGGACAGAAACCCTGGATGCTGACGAAACCGTCTTCAGCTGGGATGGCCAGCTGACGAATGGCGGAACGGCGACCAAA
GATGAAATGTACGAGTTTGTGATCGACTATTACGAGGACAATAGCTTCAAGGGCACGGCAGTCCCTAACGTCATCACCAA
GGTGACGGACATTGTCAGCGATGGCGGAACACTACGCCTCGGCACGGCATCTGGTTTGACGGTTGATCTGGCCCAAGCCA
GAAGGCTCTGA

Upstream 100 bases:

>100_bases
TGCCCTGACGGGCGGCGGCCTTGTGATCGCTGCCGACAATGGACCCAATCGCCAGACCGCCTCAAATGGCCGGCTGGACA
TCCGGCTTTAGGAGTAACTG

Downstream 100 bases:

>100_bases
TCCCGGCTAACGAGGATTGCCCGCCACCCCTGAGGAGATCAGAGATCCTGGCGGGCAATATCGAGGATCAGGATATTCTT
GATCCCCATATCCGGAAACT

Product: putative basal-body rod modification protein FlgD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MTTVTNNTGTTPQTTPQTTSTGIGSEYNSFIKLLTAQVRNQDPMSPMDSTQFVEQLATFSSLEQLVNSNTALSSIASMIG
DLNGLMASQWLGEDVTFASSFMPYTGSEATFSYEAPEGATKSTLTVKDSEGNAVWTETLDADETVFSWDGQLTNGGTATK
DEMYEFVIDYYEDNSFKGTAVPNVITKVTDIVSDGGTLRLGTASGLTVDLAQARRL

Sequences:

>Translated_216_residues
MTTVTNNTGTTPQTTPQTTSTGIGSEYNSFIKLLTAQVRNQDPMSPMDSTQFVEQLATFSSLEQLVNSNTALSSIASMIG
DLNGLMASQWLGEDVTFASSFMPYTGSEATFSYEAPEGATKSTLTVKDSEGNAVWTETLDADETVFSWDGQLTNGGTATK
DEMYEFVIDYYEDNSFKGTAVPNVITKVTDIVSDGGTLRLGTASGLTVDLAQARRL
>Mature_215_residues
TTVTNNTGTTPQTTPQTTSTGIGSEYNSFIKLLTAQVRNQDPMSPMDSTQFVEQLATFSSLEQLVNSNTALSSIASMIGD
LNGLMASQWLGEDVTFASSFMPYTGSEATFSYEAPEGATKSTLTVKDSEGNAVWTETLDADETVFSWDGQLTNGGTATKD
EMYEFVIDYYEDNSFKGTAVPNVITKVTDIVSDGGTLRLGTASGLTVDLAQARRL

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=141, Percent_Identity=36.8794326241135, Blast_Score=78, Evalue=5e-16,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 23162; Mature: 23030

Theoretical pI: Translated: 3.79; Mature: 3.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTVTNNTGTTPQTTPQTTSTGIGSEYNSFIKLLTAQVRNQDPMSPMDSTQFVEQLATFS
CCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
SLEQLVNSNTALSSIASMIGDLNGLMASQWLGEDVTFASSFMPYTGSEATFSYEAPEGAT
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEECCCCCCC
KSTLTVKDSEGNAVWTETLDADETVFSWDGQLTNGGTATKDEMYEFVIDYYEDNSFKGTA
CCEEEEECCCCCEEEEECCCCCCEEEECCCEECCCCCCCHHHHHHHHHHHHCCCCCCCCC
VPNVITKVTDIVSDGGTLRLGTASGLTVDLAQARRL
HHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHCCC
>Mature Secondary Structure 
TTVTNNTGTTPQTTPQTTSTGIGSEYNSFIKLLTAQVRNQDPMSPMDSTQFVEQLATFS
CEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
SLEQLVNSNTALSSIASMIGDLNGLMASQWLGEDVTFASSFMPYTGSEATFSYEAPEGAT
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEECCCCCCC
KSTLTVKDSEGNAVWTETLDADETVFSWDGQLTNGGTATKDEMYEFVIDYYEDNSFKGTA
CCEEEEECCCCCEEEEECCCCCCEEEECCCEECCCCCCCHHHHHHHHHHHHCCCCCCCCC
VPNVITKVTDIVSDGGTLRLGTASGLTVDLAQARRL
HHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]