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The map label for this gene is rpoE [H]

Identifier: 114799169

GI number: 114799169

Start: 267448

End: 268089

Strand: Reverse

Name: rpoE [H]

Synonym: HNE_0281

Alternate gene names: 114799169

Gene position: 268089-267448 (Counterclockwise)

Preceding gene: 114799499

Following gene: 114799435

Centisome position: 7.24

GC content: 62.31

Gene sequence:

>642_bases
TTGACAGACCCTGATCCCGCCACCGGACAGGAATCCAGCGCCAGCTTCATCGACCAGCTGGAAGCCATGATACCTCAAAT
GCGGGCGTTCGCCCGCAGCCTCTGCCGTAACGCTGACCTCGCAGACGATCTTGTGCAAGACGCATGTCTGCGCGCCTGGG
GCGCTCGCAACCGGTTTATTCCGGGCGCGCCGATGCGGCCCTGGCTGTTCAAGATCATCCGTAATCTTCATACCGGTCAT
AACCGCAAGGCATGGCGGTCGGAATCGCTTGATCCTGATGATGCTGAGAACGCCCTTGTAACAGCGGGCAGCCAGGAATG
GTCCTCTGATTTCCGCGTGATGGAAAGCGCTCTGCGGCATCTGCCTGAAAAGCAGCGCGAAGCCCTCGTCACCGTTCTTG
CGGCCGGCTTCAGCTATGAAGAAGCCGCCTGCCTGCTGGGATGCAGTGAGGGCACCGTCAAAAGCCGCGTCAGCCGCGGG
CGCGAAGCGCTTGCAGGTCTGATGGACCAGCCCAGCCTCCCGCCTTCCCTGCCTTTGACCGCCTCGCAGATCGAAACGCT
CCCGGTCGTGGGGGACATTCCGCCACAGAACTCCGGCAGCGACCTGCCCTTATGGCCAAACGGGCACACCAGAGCGGCCT
GA

Upstream 100 bases:

>100_bases
ATACTCAGCGAGCCGGTTCCCGAGCGCTTCGGCGTTTTAATCCGCAGGCTGAGAGAGCAGGAGATGCAGCGGTCAGCCCT
GATCGCATCGGAGCATTGCC

Downstream 100 bases:

>100_bases
TCTGAGGCGTCCGGCTCCACCGGACGCCTTCGCGGCCGTCCCTGTGCAGATGGCCCGCCATTTCGCCAGCCGGCAATCAC
TCAAAAAATAATGGAACGCA

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MTDPDPATGQESSASFIDQLEAMIPQMRAFARSLCRNADLADDLVQDACLRAWGARNRFIPGAPMRPWLFKIIRNLHTGH
NRKAWRSESLDPDDAENALVTAGSQEWSSDFRVMESALRHLPEKQREALVTVLAAGFSYEEAACLLGCSEGTVKSRVSRG
REALAGLMDQPSLPPSLPLTASQIETLPVVGDIPPQNSGSDLPLWPNGHTRAA

Sequences:

>Translated_213_residues
MTDPDPATGQESSASFIDQLEAMIPQMRAFARSLCRNADLADDLVQDACLRAWGARNRFIPGAPMRPWLFKIIRNLHTGH
NRKAWRSESLDPDDAENALVTAGSQEWSSDFRVMESALRHLPEKQREALVTVLAAGFSYEEAACLLGCSEGTVKSRVSRG
REALAGLMDQPSLPPSLPLTASQIETLPVVGDIPPQNSGSDLPLWPNGHTRAA
>Mature_212_residues
TDPDPATGQESSASFIDQLEAMIPQMRAFARSLCRNADLADDLVQDACLRAWGARNRFIPGAPMRPWLFKIIRNLHTGHN
RKAWRSESLDPDDAENALVTAGSQEWSSDFRVMESALRHLPEKQREALVTVLAAGFSYEEAACLLGCSEGTVKSRVSRGR
EALAGLMDQPSLPPSLPLTASQIETLPVVGDIPPQNSGSDLPLWPNGHTRAA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23245; Mature: 23114

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPDPATGQESSASFIDQLEAMIPQMRAFARSLCRNADLADDLVQDACLRAWGARNRFI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
PGAPMRPWLFKIIRNLHTGHNRKAWRSESLDPDDAENALVTAGSQEWSSDFRVMESALRH
CCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHH
LPEKQREALVTVLAAGFSYEEAACLLGCSEGTVKSRVSRGREALAGLMDQPSLPPSLPLT
CCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
ASQIETLPVVGDIPPQNSGSDLPLWPNGHTRAA
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDPDPATGQESSASFIDQLEAMIPQMRAFARSLCRNADLADDLVQDACLRAWGARNRFI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
PGAPMRPWLFKIIRNLHTGHNRKAWRSESLDPDDAENALVTAGSQEWSSDFRVMESALRH
CCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHH
LPEKQREALVTVLAAGFSYEEAACLLGCSEGTVKSRVSRGREALAGLMDQPSLPPSLPLT
CCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
ASQIETLPVVGDIPPQNSGSDLPLWPNGHTRAA
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]