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The map label for this gene is gspD [H]

Identifier: 114798909

GI number: 114798909

Start: 2655587

End: 2657671

Strand: Direct

Name: gspD [H]

Synonym: HNE_2514

Alternate gene names: 114798909

Gene position: 2655587-2657671 (Clockwise)

Preceding gene: 114799150

Following gene: 114797521

Centisome position: 71.68

GC content: 57.51

Gene sequence:

>2085_bases
ATGAACCCACGCGCTGTCCGACTGATTGGATTTGCCGCTCTACTGACAGGACTCCCCGCCTGTCAAACTGTGTCAGATCT
GTCGAAGCGATTGGATCCCAACCCCAACGCTAATATGATACGAGACGTTCCAGACAAGCGCACCAGCATTGCGGGAGAAA
ACAACCTTGCGAGCCAGCGTCAGACTGCAGCTGAGGCACAGTCTGAAGAACTTATGTATGGTAGCAGTAGGTTTTTCGAT
GACGCTCAAACTGCCGACACTCTTGTCCCTGCTGATGACAGTCAGACGCGGGGCGAAAGTTTTGTGTTCCGTAATGCGCC
GATAGACGCTGTACTGAATGAAGTGCTGGGCGAGCGTTTTGGCCTCAGCTACTCGATAGATCCGAGTGTAACTGGGAGCA
TTACGCTTCGCCTGGACGGCATATTGACACCCGATCAGGCCGTCGCAGGGATGGACGCCGCCCTGAGACTTCAGGGTTTC
GAAATTGTCGAATCGGGCGGCAATTTTGTTATCGCTCGTGTGGGTCAGTTTCAGGGATCAGTTTCAAAACCCGTGTTTCT
TCAGCCTAATGACGTTCTACCACCCGGAACTTCGCTGGCGGTGCTTCAAATAAGATATGCGAGTGTTTCAGAAGTTACGG
CGATTGCCAAATCGATGCTTGCTGAGGACCTCATCCGCTACGGCGATGATGCCCGAGGTTTTGTGGTATTGTCTGGGGAT
CCTGAGCAAGTTTCCGCCGGTGTCCAACTTCTCAAGTCCCTCGACGTTAACTGGCTCTCATCCGTTTCAACGGCGTTGAT
CCCTGTGGTTAATGCCAGTCCGGAGGAGATTGCTTCGGATCTTGAGCCAATTCTCTCTCGTCTGGGCGGCGTATCGGTCG
TCCCGCTTGAACGCCTTCAGACTTTGATGGTGATTTCGCGTCAGCGTGAGAGTCTTGACCAGGCCCGCGAATGGATCGCC
CGGCTTGACAAGGGTGCGCGTCCACAACTTATGCGGGACGTACTCGTCTATGAGGCTCGCTATGTGAACGCCGAGGATCT
GGTTGCGCTCACGGAGGGTGGCTCTGCGTCCTCCTCGGGCTTCACGACTAGCGCCTTCAATGAACCGCGAAAGACATCCG
GGCGTCGCGAAGTGACTGACCGCCCCTCCGAGACAGCTGCCCTGCCTGGGGACACTTTTTCCGAGCCTGGAACCTCTCTG
TTTGAAAGCCTGTCCATCCGGGTCGACCCGGGCCGCAATGCGGTCGTTGCGCGCGGCGCATCCGTTGAACTGGAATCGCT
TTCCGAGCTGTTATCTCTTCTCGATAAGCCCAAACGTCAGGTCCTCATCGAAGCGACGATCGTGGAAGTCAGCCTGACGG
ACGGCACATCCCTTGGTGTTCAGTGGGATCTGGTACAGGATCGGCTGTCCGCCACGTTCACCGATACCGGCAGCGGCGAT
CTGACCTCACTCTTTCCTGGCGTTTCAGTCTCCTACATCAACACCGATATCGCCGCCGTAATAAATGCGCTGGCGGCGAC
CAGTGACGTGGAAATTGTCTCGTCCCCCCGCATGCTGGTTCTGAACAATGAAACCGCCCGGCTTCAGGTTGGCGACCAGG
TGCCGATCATCACCCAGAGCGCCGTCAGCGTTTCCGACCCAGGCGCCCCGGTCGTGAATTCCACGACGTATCGCGACACA
GGCGTCATTCTGACGGTGACACCGCGCATACGCGCCGGGGGCATGGTTGAAGTCGACATATCTCAGGAAGTCAGCGGCGT
CTCGGAGACCACAACCTCCTCGATCGACTCTCCGACAATCTCTCAGCGCAGCATTCAGAGTGTGCTGGCGGTACCCGACG
GGTCCACCGCCGTCCTCGGCGGATTGATGAGTTCAACGCGGTCCTATTCGCGGACGGGGATTCCCATCCTCAAGGATACG
CCCGTTCTCGGCGCAGCGTTCCGGTCGACGAACCAGTCTGAGCGGCGCACCGAGCTTATCGTCCTGATCGAACCGACGGT
GGTTGTTTCCGAAGAACCGTCCTCGGATATTCCCGCCCTTCTGAGAGCCGCGCTCGTTCGCGCAAGGGGAGCGCCCGCAA
CATGA

Upstream 100 bases:

>100_bases
TTATTGCGGACTGCCTTTTCCGAACGTCAGAATCATCTCCTATCCTGAGACTGCAGCATGGCCGGACACATCGTCAGCGT
CGGCGGGCGGAGAAGATGTC

Downstream 100 bases:

>100_bases
CGCGGAGTGATGAGGGATATGCCACTATTCTTGTGATGGGGTTGATGGGAAGTCTTTCAATCATCGCGATGGCCTGGCTG
AACCTGGCTTCCGCAGAAGG

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 694; Mature: 694

Protein sequence:

>694_residues
MNPRAVRLIGFAALLTGLPACQTVSDLSKRLDPNPNANMIRDVPDKRTSIAGENNLASQRQTAAEAQSEELMYGSSRFFD
DAQTADTLVPADDSQTRGESFVFRNAPIDAVLNEVLGERFGLSYSIDPSVTGSITLRLDGILTPDQAVAGMDAALRLQGF
EIVESGGNFVIARVGQFQGSVSKPVFLQPNDVLPPGTSLAVLQIRYASVSEVTAIAKSMLAEDLIRYGDDARGFVVLSGD
PEQVSAGVQLLKSLDVNWLSSVSTALIPVVNASPEEIASDLEPILSRLGGVSVVPLERLQTLMVISRQRESLDQAREWIA
RLDKGARPQLMRDVLVYEARYVNAEDLVALTEGGSASSSGFTTSAFNEPRKTSGRREVTDRPSETAALPGDTFSEPGTSL
FESLSIRVDPGRNAVVARGASVELESLSELLSLLDKPKRQVLIEATIVEVSLTDGTSLGVQWDLVQDRLSATFTDTGSGD
LTSLFPGVSVSYINTDIAAVINALAATSDVEIVSSPRMLVLNNETARLQVGDQVPIITQSAVSVSDPGAPVVNSTTYRDT
GVILTVTPRIRAGGMVEVDISQEVSGVSETTTSSIDSPTISQRSIQSVLAVPDGSTAVLGGLMSSTRSYSRTGIPILKDT
PVLGAAFRSTNQSERRTELIVLIEPTVVVSEEPSSDIPALLRAALVRARGAPAT

Sequences:

>Translated_694_residues
MNPRAVRLIGFAALLTGLPACQTVSDLSKRLDPNPNANMIRDVPDKRTSIAGENNLASQRQTAAEAQSEELMYGSSRFFD
DAQTADTLVPADDSQTRGESFVFRNAPIDAVLNEVLGERFGLSYSIDPSVTGSITLRLDGILTPDQAVAGMDAALRLQGF
EIVESGGNFVIARVGQFQGSVSKPVFLQPNDVLPPGTSLAVLQIRYASVSEVTAIAKSMLAEDLIRYGDDARGFVVLSGD
PEQVSAGVQLLKSLDVNWLSSVSTALIPVVNASPEEIASDLEPILSRLGGVSVVPLERLQTLMVISRQRESLDQAREWIA
RLDKGARPQLMRDVLVYEARYVNAEDLVALTEGGSASSSGFTTSAFNEPRKTSGRREVTDRPSETAALPGDTFSEPGTSL
FESLSIRVDPGRNAVVARGASVELESLSELLSLLDKPKRQVLIEATIVEVSLTDGTSLGVQWDLVQDRLSATFTDTGSGD
LTSLFPGVSVSYINTDIAAVINALAATSDVEIVSSPRMLVLNNETARLQVGDQVPIITQSAVSVSDPGAPVVNSTTYRDT
GVILTVTPRIRAGGMVEVDISQEVSGVSETTTSSIDSPTISQRSIQSVLAVPDGSTAVLGGLMSSTRSYSRTGIPILKDT
PVLGAAFRSTNQSERRTELIVLIEPTVVVSEEPSSDIPALLRAALVRARGAPAT
>Mature_694_residues
MNPRAVRLIGFAALLTGLPACQTVSDLSKRLDPNPNANMIRDVPDKRTSIAGENNLASQRQTAAEAQSEELMYGSSRFFD
DAQTADTLVPADDSQTRGESFVFRNAPIDAVLNEVLGERFGLSYSIDPSVTGSITLRLDGILTPDQAVAGMDAALRLQGF
EIVESGGNFVIARVGQFQGSVSKPVFLQPNDVLPPGTSLAVLQIRYASVSEVTAIAKSMLAEDLIRYGDDARGFVVLSGD
PEQVSAGVQLLKSLDVNWLSSVSTALIPVVNASPEEIASDLEPILSRLGGVSVVPLERLQTLMVISRQRESLDQAREWIA
RLDKGARPQLMRDVLVYEARYVNAEDLVALTEGGSASSSGFTTSAFNEPRKTSGRREVTDRPSETAALPGDTFSEPGTSL
FESLSIRVDPGRNAVVARGASVELESLSELLSLLDKPKRQVLIEATIVEVSLTDGTSLGVQWDLVQDRLSATFTDTGSGD
LTSLFPGVSVSYINTDIAAVINALAATSDVEIVSSPRMLVLNNETARLQVGDQVPIITQSAVSVSDPGAPVVNSTTYRDT
GVILTVTPRIRAGGMVEVDISQEVSGVSETTTSSIDSPTISQRSIQSVLAVPDGSTAVLGGLMSSTRSYSRTGIPILKDT
PVLGAAFRSTNQSERRTELIVLIEPTVVVSEEPSSDIPALLRAALVRARGAPAT

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=603, Percent_Identity=24.7097844112769, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1789793, Length=282, Percent_Identity=26.9503546099291, Blast_Score=91, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 73700; Mature: 73700

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPRAVRLIGFAALLTGLPACQTVSDLSKRLDPNPNANMIRDVPDKRTSIAGENNLASQR
CCCCEEHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCHHHHH
QTAAEAQSEELMYGSSRFFDDAQTADTLVPADDSQTRGESFVFRNAPIDAVLNEVLGERF
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
GLSYSIDPSVTGSITLRLDGILTPDQAVAGMDAALRLQGFEIVESGGNFVIARVGQFQGS
CCCEECCCCCCEEEEEEECCCCCCCHHHHCCCHHEEECCEEEEECCCCEEEEEECCCCCC
VSKPVFLQPNDVLPPGTSLAVLQIRYASVSEVTAIAKSMLAEDLIRYGDDARGFVVLSGD
CCCCEEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
PEQVSAGVQLLKSLDVNWLSSVSTALIPVVNASPEEIASDLEPILSRLGGVSVVPLERLQ
HHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHCCCEEECHHHHH
TLMVISRQRESLDQAREWIARLDKGARPQLMRDVLVYEARYVNAEDLVALTEGGSASSSG
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCC
FTTSAFNEPRKTSGRREVTDRPSETAALPGDTFSEPGTSLFESLSIRVDPGRNAVVARGA
CEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCEEEECCCCCEEEECCC
SVELESLSELLSLLDKPKRQVLIEATIVEVSLTDGTSLGVQWDLVQDRLSATFTDTGSGD
CCCHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCEEEHHHHHHHHEEECCCCCCC
LTSLFPGVSVSYINTDIAAVINALAATSDVEIVSSPRMLVLNNETARLQVGDQVPIITQS
HHHHCCCCEEEEECHHHHHHHHHHHCCCCCEEECCCCEEEEECCCEEEEECCCCCEEECC
AVSVSDPGAPVVNSTTYRDTGVILTVTPRIRAGGMVEVDISQEVSGVSETTTSSIDSPTI
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECHHHHCCCCHHHHCCCCCCCC
SQRSIQSVLAVPDGSTAVLGGLMSSTRSYSRTGIPILKDTPVLGAAFRSTNQSERRTELI
CHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHCCCCCCCCEEEE
VLIEPTVVVSEEPSSDIPALLRAALVRARGAPAT
EEEECEEEEECCCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNPRAVRLIGFAALLTGLPACQTVSDLSKRLDPNPNANMIRDVPDKRTSIAGENNLASQR
CCCCEEHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCHHHHH
QTAAEAQSEELMYGSSRFFDDAQTADTLVPADDSQTRGESFVFRNAPIDAVLNEVLGERF
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
GLSYSIDPSVTGSITLRLDGILTPDQAVAGMDAALRLQGFEIVESGGNFVIARVGQFQGS
CCCEECCCCCCEEEEEEECCCCCCCHHHHCCCHHEEECCEEEEECCCCEEEEEECCCCCC
VSKPVFLQPNDVLPPGTSLAVLQIRYASVSEVTAIAKSMLAEDLIRYGDDARGFVVLSGD
CCCCEEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
PEQVSAGVQLLKSLDVNWLSSVSTALIPVVNASPEEIASDLEPILSRLGGVSVVPLERLQ
HHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHCCCEEECHHHHH
TLMVISRQRESLDQAREWIARLDKGARPQLMRDVLVYEARYVNAEDLVALTEGGSASSSG
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCC
FTTSAFNEPRKTSGRREVTDRPSETAALPGDTFSEPGTSLFESLSIRVDPGRNAVVARGA
CEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCEEEECCCCCEEEECCC
SVELESLSELLSLLDKPKRQVLIEATIVEVSLTDGTSLGVQWDLVQDRLSATFTDTGSGD
CCCHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCEEEHHHHHHHHEEECCCCCCC
LTSLFPGVSVSYINTDIAAVINALAATSDVEIVSSPRMLVLNNETARLQVGDQVPIITQS
HHHHCCCCEEEEECHHHHHHHHHHHCCCCCEEECCCCEEEEECCCEEEEECCCCCEEECC
AVSVSDPGAPVVNSTTYRDTGVILTVTPRIRAGGMVEVDISQEVSGVSETTTSSIDSPTI
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECHHHHCCCCHHHHCCCCCCCC
SQRSIQSVLAVPDGSTAVLGGLMSSTRSYSRTGIPILKDTPVLGAAFRSTNQSERRTELI
CHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHCCCCCCCCEEEE
VLIEPTVVVSEEPSSDIPALLRAALVRARGAPAT
EEEECEEEEECCCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]