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The map label for this gene is rimM

Identifier: 114798866

GI number: 114798866

Start: 32822

End: 33367

Strand: Direct

Name: rimM

Synonym: HNE_0041

Alternate gene names: 114798866

Gene position: 32822-33367 (Clockwise)

Preceding gene: 114797587

Following gene: 114798164

Centisome position: 0.89

GC content: 63.55

Gene sequence:

>546_bases
ATGAGCGCAGACACAAAGACACAAAGACTGATACCCATGGGCGTCCTGAAGGGCGCCCATGGTGTTCGCGGCGAGGTTCG
GGTGAAGAGTTTCACCGCCGATCCCGATGCCCTCTTCACCTATGGCCCGCTGATGGATGAAGCCGGCAAGGTCCTGCTGA
CGCCGATCACTGCGCGCCCCGGCAAGGACCATTTCATCGTCCGCCCGAAGGAAAACCTGCAGAAGGAAGACTGGGACGCC
CTGCGCGGCTGCCTGCTCCACGCTTCCCGCGACCAGCTTCCCGAGGCCGATGAAGACGAGTTCTACTTCGAAGACCTGAT
CGGCATGCCGGTCTATACCGTCGGCGAGGAACCCGAAGCCCGCGTCCGCGCCGTCCAGAATTTCGGCTCTGGCGACTTGC
TGGAGATCGAGATCCCCGGCGCCCCGGCCACCATATATGTGCCGCTGACCCGCGCCGATGTGCCCGTCATCGACATGGCC
GCCCACCGCATCGTGATCCCCGAACTCTCCCTCTGGGCGAACCAGGACGAAGACGACGCCTCCTGA

Upstream 100 bases:

>100_bases
GCCGCCACCCGCTACTGCCAGAGCCTCGGCTTTTATGAAGCAGTCTATAAATCACCCGGCCCCGTTCTCTCCGACGTCGT
TTGCCGCTAACAAGCGCGCC

Downstream 100 bases:

>100_bases
AAATCCTTGCGCAGTGTTCACGCAGTTTGTTGCGGCCCATTCAGGTAGCCGGTGTCATTCTGACCGCGTAATGGACGAAA
GGAGCCCTCGATGCGGGTCT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MSADTKTQRLIPMGVLKGAHGVRGEVRVKSFTADPDALFTYGPLMDEAGKVLLTPITARPGKDHFIVRPKENLQKEDWDA
LRGCLLHASRDQLPEADEDEFYFEDLIGMPVYTVGEEPEARVRAVQNFGSGDLLEIEIPGAPATIYVPLTRADVPVIDMA
AHRIVIPELSLWANQDEDDAS

Sequences:

>Translated_181_residues
MSADTKTQRLIPMGVLKGAHGVRGEVRVKSFTADPDALFTYGPLMDEAGKVLLTPITARPGKDHFIVRPKENLQKEDWDA
LRGCLLHASRDQLPEADEDEFYFEDLIGMPVYTVGEEPEARVRAVQNFGSGDLLEIEIPGAPATIYVPLTRADVPVIDMA
AHRIVIPELSLWANQDEDDAS
>Mature_180_residues
SADTKTQRLIPMGVLKGAHGVRGEVRVKSFTADPDALFTYGPLMDEAGKVLLTPITARPGKDHFIVRPKENLQKEDWDAL
RGCLLHASRDQLPEADEDEFYFEDLIGMPVYTVGEEPEARVRAVQNFGSGDLLEIEIPGAPATIYVPLTRADVPVIDMAA
HRIVIPELSLWANQDEDDAS

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_HYPNA (Q0C668)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_758775.1
- ProteinModelPortal:   Q0C668
- SMR:   Q0C668
- STRING:   Q0C668
- GeneID:   4289722
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_0041
- NMPDR:   fig|228405.5.peg.41
- TIGR:   HNE_0041
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- PhylomeDB:   Q0C668
- ProtClustDB:   CLSK2531905
- BioCyc:   HNEP81032:HNE_0041-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19982; Mature: 19851

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSADTKTQRLIPMGVLKGAHGVRGEVRVKSFTADPDALFTYGPLMDEAGKVLLTPITARP
CCCCCCHHEECHHHHHCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCEEEEEEECCC
GKDHFIVRPKENLQKEDWDALRGCLLHASRDQLPEADEDEFYFEDLIGMPVYTVGEEPEA
CCCCEEECCHHHCCCCHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHCCCCEEEECCCCHH
RVRAVQNFGSGDLLEIEIPGAPATIYVPLTRADVPVIDMAAHRIVIPELSLWANQDEDDA
HHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCCEEECCCCEEECCCHHHHCCCCCCCC
S
C
>Mature Secondary Structure 
SADTKTQRLIPMGVLKGAHGVRGEVRVKSFTADPDALFTYGPLMDEAGKVLLTPITARP
CCCCCHHEECHHHHHCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCEEEEEEECCC
GKDHFIVRPKENLQKEDWDALRGCLLHASRDQLPEADEDEFYFEDLIGMPVYTVGEEPEA
CCCCEEECCHHHCCCCHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHCCCCEEEECCCCHH
RVRAVQNFGSGDLLEIEIPGAPATIYVPLTRADVPVIDMAAHRIVIPELSLWANQDEDDA
HHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCCEEECCCCEEECCCHHHHCCCCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA