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The map label for this gene is secD2 [H]

Identifier: 114798705

GI number: 114798705

Start: 2478532

End: 2481054

Strand: Reverse

Name: secD2 [H]

Synonym: HNE_2378

Alternate gene names: 114798705

Gene position: 2481054-2478532 (Counterclockwise)

Preceding gene: 114797064

Following gene: 114799443

Centisome position: 66.96

GC content: 63.42

Gene sequence:

>2523_bases
ATGCGTACCACCAGAACGGTACTGGTAACCTATATTCTTATCATCCTGATCGGGCTGCTGGCGGCCCTGCCAAACGTGCT
GTCGCCGCAGCAGATTGCGGCCATGCCCGACTGGCTGCCCAAGAAGCAGATCACGCTGGGTCTCGACCTGCGCGGCGGCT
CGCATCTTGTCCTGGAGGTAGACGGCCCGGCCTTGCTGGCTGACCGGCTGAAATCCCTCGCCGCCGAAACCCGCACCCTG
ATGAGCACCGAAACCGTGCGCGGCAAGGTGGAGGTGACGGGCGACACGGTGGTGGCACGGATCACCGATCCCGATGGGCG
CAGCCGTATCCTCTCAAGGCTGCGCGAACAGGTGACGCAGGTTCAACAGGCCGGGTTTACCGGTTCGGTGCCTGACATCC
TCATCCAGCCGAAGGGCGATACGATCACCCTGTCCCTCTCCGAGGCGGGCACCGCAGACCGCATCAACCAGGCCATCGGC
CAGAGCGTCGAAATCGTGCGCCAGCGGGTCGATCAGGTGGGTGTTGCCGAGCCGACCATCCAGCGCGTCGGCGCCGACCG
TATCCTCGTCCAGCTGCCCGGTCTGCAAGACCCCACCCGCCTGCGTGAACTGCTCGGCTCCACCGCGCAGATGTCTTTCC
ACATGGTCGCGCCGGAAACCTATGGCGGCGAAGTGCCCGATGGCGTCACCCTCCTGCCGGACACCAAAACCGGCGCGGAG
ATGCCCATCTATGACCGCGTTGCCCTGAGCGGCGACCGGTTGTCCGATGCCCGCTCGGGCTTTGATTCCCAGACCAACGA
GCCCATCGTCACCTTCCGCTTCGACGCGGCCGGCACAAAACAGTTTGCCGAGATCACCAAGAACAATGTTGGCAAACCCT
TTGCCATTGTTCTGGACGGAAAGGTGCTGACCGCCCCGGTCATCCAGGGGCCGATCCTTGGCGGCTCCGGCCAGATCACC
GGCGACTTCACGATTGAAGAAACCGCGATGCTCTCCGCCCTCCTGCGGGCAGGCGCCCTGCCAGCGCCGCTGACCGTGAT
CGAGGAGCGCACGGTGGGGCCAGACCTTGGCGCCGATGTGATCAGCATGGGCCTCTACACCGGCCTGATCGGCTTTGCGC
TGGTCGTCGCGTTCATGACCCTGCTTTACCGGGGCTGGGGCCTGATCGCGAGTTTCGCGCTGTTCCTCAACGTGGCCCTC
ACCCTTGGTATCCTGACCTTCATGGGCGCCACGCTGACCCTGCCGGGCATTGCCGGCATCATTCTGGGCATCGGCATCGC
GGTGGACGCCAATATCCTGATCAACGAGCGCATCCGCGAGGAAAGCAAGAAAGGCGTCAGCGCCCTCGCCGCGCTCGACC
GGGGGTTCAACATTGCCTATTCAACCATCCTCGACGCCAACATCACCACGCTGATCGCCACGGCGCTGCTGTTCATGTTC
GGCTCCGGCCCGGTGAAGGGCTTTGCCGTCACCATGATCGTGGGCACGGGTGTGTCGCTGTTTACAGCGGTCACGGTGGT
CCGTGTCCTGATGACAGCCTGGGTGCGCCACCGCCGCATCAAGCGCATCGACATCGAGCCGCTGTTCCGCCTGGTGCCCG
ACGGATCGAAAATCTCGTTCATGAAGGCGCGCTATTTCGGCATCGCCACCTCCATCCTGCTCTCGATTGCCTCCATCGGC
CTCTTCATCAATCCGGGCCTCAATTACGGCATCGACTTTACCGGCGGCATTCAGGTGGAAATCACCACGCCGGGAGAAGC
CAACCTCTCCCAGCTGCGCGCTGAACTTGGCGAGCTGGGACTGGGTGAAGTCGCCCTCCAGCAGATCGGCGGCAAGGATG
ACGTGCTGATCCGCATCCAGCGACAGGATGGCGGCGAGGCGGCCCAGACGGCGGCGGTCAATACCGTGCGCCAGACGCTG
AGCGAGATCGATCCGGGTATCTCGGTGGAGCGGACCGAAGTGGTCGGGCCGAAAGTGTCCGGCGAGCTTGCCCGCAACGG
CATGATCGCCGTCGGCCTCGCGAGCCTGGCGATGCTGTTCTATATCTGGTGGCGGTTCGAGTGGAACTTCGCCATCGGGG
CAATCGTCACCCTGGCGCTGGATACGACGAAGATGCTCGGCTTCTTCGTTCTCTTCGGGCTGGACTTCAACCTCACCGCC
ATCGCCGCGCTGCTGACCTTCATCGGCTATTCGGTGAACGACAAGGTAGTCGTCTATGACCGGATGCGGGAGAATATCCG
CCTGGCCAAGCGCTACGATCTGCGAACGGTCATCGACACCAGCATCAACCAGGTGCTGACCCGGTGCATCTTCACCTCGA
TGACGACGCTGCTGGCCATCGTGCCGATGGCCATCTGGGGCGGCAATGCGGTCGAGAATTTCGCCTTGCCGATGGTGTTT
GGCGTGCTGATCGCCACCATGTCCTCGATCTTCATCGCCGCGCCGATCCTTCTGCTGCTGGGAAATCTTGCCCAGCGCCA
CCAGCATGCCGGAGCGGTTCAGCCTGACGCCCCCGTCAGCTGA

Upstream 100 bases:

>100_bases
CAGCCAGACTGCGCCCGGCCGGATTCCGGCCCTGTGCGCGCGATCACCGGCCGCCATACGCGATGGCCTCCGGTTTCAGG
CATCCTCAAGGAATTTCCGC

Downstream 100 bases:

>100_bases
CCCTTCGGCGGGGAGCGCCGCCCGCCCGCCTGTCCTGGCGGCGCTCCCCTTTTTCTTTCGCAGGTGCGTCCGCCCCTATC
GGCGTTTTGCGCGAGGTTTC

Product: bifunctional preprotein translocase subunit SecD/SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 840; Mature: 840

Protein sequence:

>840_residues
MRTTRTVLVTYILIILIGLLAALPNVLSPQQIAAMPDWLPKKQITLGLDLRGGSHLVLEVDGPALLADRLKSLAAETRTL
MSTETVRGKVEVTGDTVVARITDPDGRSRILSRLREQVTQVQQAGFTGSVPDILIQPKGDTITLSLSEAGTADRINQAIG
QSVEIVRQRVDQVGVAEPTIQRVGADRILVQLPGLQDPTRLRELLGSTAQMSFHMVAPETYGGEVPDGVTLLPDTKTGAE
MPIYDRVALSGDRLSDARSGFDSQTNEPIVTFRFDAAGTKQFAEITKNNVGKPFAIVLDGKVLTAPVIQGPILGGSGQIT
GDFTIEETAMLSALLRAGALPAPLTVIEERTVGPDLGADVISMGLYTGLIGFALVVAFMTLLYRGWGLIASFALFLNVAL
TLGILTFMGATLTLPGIAGIILGIGIAVDANILINERIREESKKGVSALAALDRGFNIAYSTILDANITTLIATALLFMF
GSGPVKGFAVTMIVGTGVSLFTAVTVVRVLMTAWVRHRRIKRIDIEPLFRLVPDGSKISFMKARYFGIATSILLSIASIG
LFINPGLNYGIDFTGGIQVEITTPGEANLSQLRAELGELGLGEVALQQIGGKDDVLIRIQRQDGGEAAQTAAVNTVRQTL
SEIDPGISVERTEVVGPKVSGELARNGMIAVGLASLAMLFYIWWRFEWNFAIGAIVTLALDTTKMLGFFVLFGLDFNLTA
IAALLTFIGYSVNDKVVVYDRMRENIRLAKRYDLRTVIDTSINQVLTRCIFTSMTTLLAIVPMAIWGGNAVENFALPMVF
GVLIATMSSIFIAAPILLLLGNLAQRHQHAGAVQPDAPVS

Sequences:

>Translated_840_residues
MRTTRTVLVTYILIILIGLLAALPNVLSPQQIAAMPDWLPKKQITLGLDLRGGSHLVLEVDGPALLADRLKSLAAETRTL
MSTETVRGKVEVTGDTVVARITDPDGRSRILSRLREQVTQVQQAGFTGSVPDILIQPKGDTITLSLSEAGTADRINQAIG
QSVEIVRQRVDQVGVAEPTIQRVGADRILVQLPGLQDPTRLRELLGSTAQMSFHMVAPETYGGEVPDGVTLLPDTKTGAE
MPIYDRVALSGDRLSDARSGFDSQTNEPIVTFRFDAAGTKQFAEITKNNVGKPFAIVLDGKVLTAPVIQGPILGGSGQIT
GDFTIEETAMLSALLRAGALPAPLTVIEERTVGPDLGADVISMGLYTGLIGFALVVAFMTLLYRGWGLIASFALFLNVAL
TLGILTFMGATLTLPGIAGIILGIGIAVDANILINERIREESKKGVSALAALDRGFNIAYSTILDANITTLIATALLFMF
GSGPVKGFAVTMIVGTGVSLFTAVTVVRVLMTAWVRHRRIKRIDIEPLFRLVPDGSKISFMKARYFGIATSILLSIASIG
LFINPGLNYGIDFTGGIQVEITTPGEANLSQLRAELGELGLGEVALQQIGGKDDVLIRIQRQDGGEAAQTAAVNTVRQTL
SEIDPGISVERTEVVGPKVSGELARNGMIAVGLASLAMLFYIWWRFEWNFAIGAIVTLALDTTKMLGFFVLFGLDFNLTA
IAALLTFIGYSVNDKVVVYDRMRENIRLAKRYDLRTVIDTSINQVLTRCIFTSMTTLLAIVPMAIWGGNAVENFALPMVF
GVLIATMSSIFIAAPILLLLGNLAQRHQHAGAVQPDAPVS
>Mature_840_residues
MRTTRTVLVTYILIILIGLLAALPNVLSPQQIAAMPDWLPKKQITLGLDLRGGSHLVLEVDGPALLADRLKSLAAETRTL
MSTETVRGKVEVTGDTVVARITDPDGRSRILSRLREQVTQVQQAGFTGSVPDILIQPKGDTITLSLSEAGTADRINQAIG
QSVEIVRQRVDQVGVAEPTIQRVGADRILVQLPGLQDPTRLRELLGSTAQMSFHMVAPETYGGEVPDGVTLLPDTKTGAE
MPIYDRVALSGDRLSDARSGFDSQTNEPIVTFRFDAAGTKQFAEITKNNVGKPFAIVLDGKVLTAPVIQGPILGGSGQIT
GDFTIEETAMLSALLRAGALPAPLTVIEERTVGPDLGADVISMGLYTGLIGFALVVAFMTLLYRGWGLIASFALFLNVAL
TLGILTFMGATLTLPGIAGIILGIGIAVDANILINERIREESKKGVSALAALDRGFNIAYSTILDANITTLIATALLFMF
GSGPVKGFAVTMIVGTGVSLFTAVTVVRVLMTAWVRHRRIKRIDIEPLFRLVPDGSKISFMKARYFGIATSILLSIASIG
LFINPGLNYGIDFTGGIQVEITTPGEANLSQLRAELGELGLGEVALQQIGGKDDVLIRIQRQDGGEAAQTAAVNTVRQTL
SEIDPGISVERTEVVGPKVSGELARNGMIAVGLASLAMLFYIWWRFEWNFAIGAIVTLALDTTKMLGFFVLFGLDFNLTA
IAALLTFIGYSVNDKVVVYDRMRENIRLAKRYDLRTVIDTSINQVLTRCIFTSMTTLLAIVPMAIWGGNAVENFALPMVF
GVLIATMSSIFIAAPILLLLGNLAQRHQHAGAVQPDAPVS

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=525, Percent_Identity=37.7142857142857, Blast_Score=317, Evalue=2e-87,
Organism=Escherichia coli, GI1786610, Length=309, Percent_Identity=36.8932038834951, Blast_Score=197, Evalue=3e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 89990; Mature: 89990

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTTRTVLVTYILIILIGLLAALPNVLSPQQIAAMPDWLPKKQITLGLDLRGGSHLVLEV
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCEEEEEEECCCCEEEEEE
DGPALLADRLKSLAAETRTLMSTETVRGKVEVTGDTVVARITDPDGRSRILSRLREQVTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEEECCCHHHHHHHHHHHHHHH
VQQAGFTGSVPDILIQPKGDTITLSLSEAGTADRINQAIGQSVEIVRQRVDQVGVAEPTI
HHHCCCCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
QRVGADRILVQLPGLQDPTRLRELLGSTAQMSFHMVAPETYGGEVPDGVTLLPDTKTGAE
HHCCCCEEEEECCCCCCHHHHHHHHCCHHHEEEEEECCCCCCCCCCCCCEECCCCCCCCC
MPIYDRVALSGDRLSDARSGFDSQTNEPIVTFRFDAAGTKQFAEITKNNVGKPFAIVLDG
CCCHHHHCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEEECC
KVLTAPVIQGPILGGSGQITGDFTIEETAMLSALLRAGALPAPLTVIEERTVGPDLGADV
CEEECHHHCCCEECCCCCEEECEEHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCHHH
ISMGLYTGLIGFALVVAFMTLLYRGWGLIASFALFLNVALTLGILTFMGATLTLPGIAGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
ILGIGIAVDANILINERIREESKKGVSALAALDRGFNIAYSTILDANITTLIATALLFMF
HHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHHHHHHH
GSGPVKGFAVTMIVGTGVSLFTAVTVVRVLMTAWVRHRRIKRIDIEPLFRLVPDGSKISF
CCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEH
MKARYFGIATSILLSIASIGLFINPGLNYGIDFTGGIQVEITTPGEANLSQLRAELGELG
HHHHHHHHHHHHHHHHHHHCEEECCCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHCCC
LGEVALQQIGGKDDVLIRIQRQDGGEAAQTAAVNTVRQTLSEIDPGISVERTEVVGPKVS
CHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
GELARNGMIAVGLASLAMLFYIWWRFEWNFAIGAIVTLALDTTKMLGFFVLFGLDFNLTA
HHHHHCCCHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
IAALLTFIGYSVNDKVVVYDRMRENIRLAKRYDLRTVIDTSINQVLTRCIFTSMTTLLAI
HHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPMAIWGGNAVENFALPMVFGVLIATMSSIFIAAPILLLLGNLAQRHQHAGAVQPDAPVS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRTTRTVLVTYILIILIGLLAALPNVLSPQQIAAMPDWLPKKQITLGLDLRGGSHLVLEV
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCEEEEEEECCCCEEEEEE
DGPALLADRLKSLAAETRTLMSTETVRGKVEVTGDTVVARITDPDGRSRILSRLREQVTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEEECCCHHHHHHHHHHHHHHH
VQQAGFTGSVPDILIQPKGDTITLSLSEAGTADRINQAIGQSVEIVRQRVDQVGVAEPTI
HHHCCCCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
QRVGADRILVQLPGLQDPTRLRELLGSTAQMSFHMVAPETYGGEVPDGVTLLPDTKTGAE
HHCCCCEEEEECCCCCCHHHHHHHHCCHHHEEEEEECCCCCCCCCCCCCEECCCCCCCCC
MPIYDRVALSGDRLSDARSGFDSQTNEPIVTFRFDAAGTKQFAEITKNNVGKPFAIVLDG
CCCHHHHCCCCCCCHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEEECC
KVLTAPVIQGPILGGSGQITGDFTIEETAMLSALLRAGALPAPLTVIEERTVGPDLGADV
CEEECHHHCCCEECCCCCEEECEEHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCHHH
ISMGLYTGLIGFALVVAFMTLLYRGWGLIASFALFLNVALTLGILTFMGATLTLPGIAGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
ILGIGIAVDANILINERIREESKKGVSALAALDRGFNIAYSTILDANITTLIATALLFMF
HHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHHHHHHH
GSGPVKGFAVTMIVGTGVSLFTAVTVVRVLMTAWVRHRRIKRIDIEPLFRLVPDGSKISF
CCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEH
MKARYFGIATSILLSIASIGLFINPGLNYGIDFTGGIQVEITTPGEANLSQLRAELGELG
HHHHHHHHHHHHHHHHHHHCEEECCCCCCCCEECCCEEEEEECCCCCCHHHHHHHHHCCC
LGEVALQQIGGKDDVLIRIQRQDGGEAAQTAAVNTVRQTLSEIDPGISVERTEVVGPKVS
CHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
GELARNGMIAVGLASLAMLFYIWWRFEWNFAIGAIVTLALDTTKMLGFFVLFGLDFNLTA
HHHHHCCCHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
IAALLTFIGYSVNDKVVVYDRMRENIRLAKRYDLRTVIDTSINQVLTRCIFTSMTTLLAI
HHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPMAIWGGNAVENFALPMVFGVLIATMSSIFIAAPILLLLGNLAQRHQHAGAVQPDAPVS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9826342 [H]