Click here to switch to the map view.

The map label for this gene is yagA [H]

Identifier: 114798588

GI number: 114798588

Start: 3364547

End: 3365722

Strand: Direct

Name: yagA [H]

Synonym: HNE_3190

Alternate gene names: 114798588

Gene position: 3364547-3365722 (Clockwise)

Preceding gene: 114799920

Following gene: 114797847

Centisome position: 90.81

GC content: 64.88

Gene sequence:

>1176_bases
ATGGGTTGGAGGCAGACAGATCCGATGAACGAGCGTGTTGAGTTCATCGCGGCGTGGCTGAAGGGTGAGGACAGTGTGAC
AGAGCTGTCTGTGCGGTTCGATATATCGCGCAAGACGGCCTACAAATGGATTGAGCGTTACAAGGCTGCGGGGCCGGCGG
GGCTTTATGATGTGTCTCGAGCCCCGCTTTGCCCGGCGGGCGGCACGCCACCGGAGCTGGCGTCCCGTGTGGTGACGCTC
CGGCGGGCGCATCCTGCCTGGGGGCCGCGCAAGTTGAAGGCGCGTCTGGAGATGGATGATCCGGGTGTTGCCTGGCCAGC
GGCTTCGACGATCGGTGACATTCTCAAGCGCGAAGGGCTTGTATCTCCGCGGCGGTTTCGCCGGCGCGCGGCGCCGATGA
CAACGCCCTTTGCGCAGGCGCATGCCCCCAACGATGTCTGGTGCATGGACTTCAAGGGCTGGTGGCGTACGGGCGATGGC
CAACGCTGTGAGCCGTTCACGGTCTCGGACGCCCTGAGCCGGTATCTTCTGGTCTGCCAGCCTGTCGCGCGCACGGGCTA
TGATACGGTCTGGCCGGTACTGGCAAAGGCGTTCCGGGACCACGGCCTGCCGCGCGCCATCCGGTCAGACAATGGTCCGC
CTTTCGGGTCTGTGGCGGCCGGGGGCCTGTCCCGTCTGGCGGTCAACTTTGTGAAGATGGGCATCTTCCCGGAACGGATC
ACCCCTGGAAAGCCGCAGGAGAATGGGCGCCATGAGCGTCTGCATCTGACCCTGAAGCGCGAAGCGGCCGATCCGGTCTC
CCGCACACTTCGGGCGCAGGCCGCGCGCCTTGTCCGGTTCCGGAAATCCTACAATCATGAGCGTCCGCATGAGGCGCTCG
GCCAGAAACCCCCGGCGGCGGTCTATGTGCCAAGCCCGCGCGTATGGGACGGCAAGCTTCGCGCCCCGGACTATCCTGGC
GCCACCGAAACCCGCGCGGTCAGGCACGCCGGCACCATTAGATGGCGCGGCGCGGAACCCTTCATCTCCGAAGTGCTGAT
CGGGGAGCGCGTTGGCCTCTTCCGGACCGGCGAAGACCAATACGACGTCTACTTCGGCCCCATCCTCCTCGGACACATCG
ACCCGAAAAAACGCATGAACCGCATCAAGCCTGGCAGACCACGGAACATACCATGA

Upstream 100 bases:

>100_bases
GGAGGATAAGGGCGTGGTCCAATCCGGTAAGATGGGTAACAAAACAGACCGGGGACATGGGTAACAGATTTGCGAGGATG
ACCATCTGGAGGAGATGGTC

Downstream 100 bases:

>100_bases
AAACTGTAACCCATCTCCCCGGTCTCAAATGTTACCTATGTCCCCGGTTGCACAGCGTGCGCTGAAGATGAGAGGGCGCG
GTTAATCTCACCCCCCATAG

Product: ISHne2, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MGWRQTDPMNERVEFIAAWLKGEDSVTELSVRFDISRKTAYKWIERYKAAGPAGLYDVSRAPLCPAGGTPPELASRVVTL
RRAHPAWGPRKLKARLEMDDPGVAWPAASTIGDILKREGLVSPRRFRRRAAPMTTPFAQAHAPNDVWCMDFKGWWRTGDG
QRCEPFTVSDALSRYLLVCQPVARTGYDTVWPVLAKAFRDHGLPRAIRSDNGPPFGSVAAGGLSRLAVNFVKMGIFPERI
TPGKPQENGRHERLHLTLKREAADPVSRTLRAQAARLVRFRKSYNHERPHEALGQKPPAAVYVPSPRVWDGKLRAPDYPG
ATETRAVRHAGTIRWRGAEPFISEVLIGERVGLFRTGEDQYDVYFGPILLGHIDPKKRMNRIKPGRPRNIP

Sequences:

>Translated_391_residues
MGWRQTDPMNERVEFIAAWLKGEDSVTELSVRFDISRKTAYKWIERYKAAGPAGLYDVSRAPLCPAGGTPPELASRVVTL
RRAHPAWGPRKLKARLEMDDPGVAWPAASTIGDILKREGLVSPRRFRRRAAPMTTPFAQAHAPNDVWCMDFKGWWRTGDG
QRCEPFTVSDALSRYLLVCQPVARTGYDTVWPVLAKAFRDHGLPRAIRSDNGPPFGSVAAGGLSRLAVNFVKMGIFPERI
TPGKPQENGRHERLHLTLKREAADPVSRTLRAQAARLVRFRKSYNHERPHEALGQKPPAAVYVPSPRVWDGKLRAPDYPG
ATETRAVRHAGTIRWRGAEPFISEVLIGERVGLFRTGEDQYDVYFGPILLGHIDPKKRMNRIKPGRPRNIP
>Mature_390_residues
GWRQTDPMNERVEFIAAWLKGEDSVTELSVRFDISRKTAYKWIERYKAAGPAGLYDVSRAPLCPAGGTPPELASRVVTLR
RAHPAWGPRKLKARLEMDDPGVAWPAASTIGDILKREGLVSPRRFRRRAAPMTTPFAQAHAPNDVWCMDFKGWWRTGDGQ
RCEPFTVSDALSRYLLVCQPVARTGYDTVWPVLAKAFRDHGLPRAIRSDNGPPFGSVAAGGLSRLAVNFVKMGIFPERIT
PGKPQENGRHERLHLTLKREAADPVSRTLRAQAARLVRFRKSYNHERPHEALGQKPPAAVYVPSPRVWDGKLRAPDYPGA
TETRAVRHAGTIRWRGAEPFISEVLIGERVGLFRTGEDQYDVYFGPILLGHIDPKKRMNRIKPGRPRNIP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=386, Percent_Identity=33.9378238341969, Blast_Score=176, Evalue=2e-45,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 43942; Mature: 43811

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGWRQTDPMNERVEFIAAWLKGEDSVTELSVRFDISRKTAYKWIERYKAAGPAGLYDVSR
CCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC
APLCPAGGTPPELASRVVTLRRAHPAWGPRKLKARLEMDDPGVAWPAASTIGDILKREGL
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHEEEECCCCCCCCCCCHHHHHHHHHHCCC
VSPRRFRRRAAPMTTPFAQAHAPNDVWCMDFKGWWRTGDGQRCEPFTVSDALSRYLLVCQ
CCHHHHHHHCCCCCCCHHHHCCCCCEEEEECCCEEECCCCCCCCCCCHHHHHHHHHHHHH
PVARTGYDTVWPVLAKAFRDHGLPRAIRSDNGPPFGSVAAGGLSRLAVNFVKMGIFPERI
HHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
TPGKPQENGRHERLHLTLKREAADPVSRTLRAQAARLVRFRKSYNHERPHEALGQKPPAA
CCCCCCCCCCCEEEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCE
VYVPSPRVWDGKLRAPDYPGATETRAVRHAGTIRWRGAEPFISEVLIGERVGLFRTGEDQ
EECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCHHHHHHHHHHCCCEEECCCCC
YDVYFGPILLGHIDPKKRMNRIKPGRPRNIP
CEEEECCEEEECCCHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GWRQTDPMNERVEFIAAWLKGEDSVTELSVRFDISRKTAYKWIERYKAAGPAGLYDVSR
CCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC
APLCPAGGTPPELASRVVTLRRAHPAWGPRKLKARLEMDDPGVAWPAASTIGDILKREGL
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHEEEECCCCCCCCCCCHHHHHHHHHHCCC
VSPRRFRRRAAPMTTPFAQAHAPNDVWCMDFKGWWRTGDGQRCEPFTVSDALSRYLLVCQ
CCHHHHHHHCCCCCCCHHHHCCCCCEEEEECCCEEECCCCCCCCCCCHHHHHHHHHHHHH
PVARTGYDTVWPVLAKAFRDHGLPRAIRSDNGPPFGSVAAGGLSRLAVNFVKMGIFPERI
HHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
TPGKPQENGRHERLHLTLKREAADPVSRTLRAQAARLVRFRKSYNHERPHEALGQKPPAA
CCCCCCCCCCCEEEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCE
VYVPSPRVWDGKLRAPDYPGATETRAVRHAGTIRWRGAEPFISEVLIGERVGLFRTGEDQ
EECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCHHHHHHHHHHCCCEEECCCCC
YDVYFGPILLGHIDPKKRMNRIKPGRPRNIP
CEEEECCEEEECCCHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]