Definition Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession NC_008358
Length 3,705,021

Click here to switch to the map view.

The map label for this gene is 114798531

Identifier: 114798531

GI number: 114798531

Start: 2701302

End: 2702693

Strand: Reverse

Name: 114798531

Synonym: HNE_2549

Alternate gene names: NA

Gene position: 2702693-2701302 (Counterclockwise)

Preceding gene: 114798489

Following gene: 114799894

Centisome position: 72.95

GC content: 59.41

Gene sequence:

>1392_bases
ATGGAGGCGCTTGATCTCATCCTTCTGGAGCCGCACGAGGCGCTGATTCGGTCCTTGTTGACAGCGGGGGCTGGGTCGGA
GCGCTCGGCTTACATGCTGTTTGGCATCGCCGATATCCAAGTCGATCCATGGTCAAACCAGCCGCGGCGCCGGCTGGTTT
CTCATCGTTTCCAATCCATCAGCTGTCACGACCTTGTATCAGCATCAGCGCGGCATGTGACTTGGCAGACCGATGGCTTC
ATGCGCCTCCTGAACGAGGCCAAGGAAATGGGTCTCGCTCCAGCCCTAGTTCATACCCATCCCGACGGCCAGGCCAAGTT
CTCTGAGCAGGACAACCGCAACGAAGCCGAGCTGGCCCGCACCGCTCTTTTGAAGGGGGCGCCAGGATTGATCAGCGTCG
TTATTGCCGGGAATGGCGATATTGCTGCACGCTTTTGGGCGCAGACAGAGAAAGCAGAAGACATCGGTCGGATCCTGCAT
GTCGGACCGCGCCTGCATATCTCGGGAGTGAAGGGAGCGCCGGCGGGTTTTCTGGATCGCCAGGTCCGGCTCTTCGGGCA
TGAAGCCTCGCGTCAAATAGCTGGGTTCCGATGTGGGATTGCTGGTGGAGGTGCGACCGGAAGTGCCGTCTTGCCCCTGC
TGTTGCGGCTTGGGGTTCAGGAGGCCATCCAATTCGAGAAGGACATCGTGGACGAAACAAATCTCAACCGCCTTCACGGA
GCGCGGCGCTCGGATGTCGATGAAAAAATGCCTAAGACCGCTATTCACACGCGAACGGTGAAGGAATCCGGGCTCGGCAT
GACCTTGGTGAGCGTGGATGCCTGGGCCGGAAACCCGCAAACCTGGGATGCTCTAAAAGCGTGCGATGTGATCTTTTGCT
GCACAGATGACCACGCCGGACGGTTGTTTCTCAATCGCTTCGCGCGGTTCTACGGCATCCCCGTTATCGATGTCGGACTC
GCGATGCAGCGGCGGACCGACACAGCATTTGATCTCTTTGCCCGCGTTTCGACGCTAGTGCCTGGGCATTCCTGCTTACT
TTGCGGCGGCTTCGTCGATCCGCGGCGAGCGCGTGAAGAAGCAATGCGGCGCAATGATCCCGATGCATATGAGCGGTTGA
AAGAAGAAGCCTACGTTCTGGGTGAAGGTGATCCGTCCCCGGCTGTCGTCACCTTCACGACCGAAGCGGCGGCGATGGCA
GTCAATGAGTGGTTGGCCGGAGTGACCGGGCTTGCTGGAGAGGCCGGAATGGTGTCTACGCGGATGCGGCGCTTTCACGC
CAGAGACGAGCGCAGACCGTTTGTTGAGTCGCAACCCGATTGCCCCTGCTGCAACCAGCCAGCAACACTTGGTCGGGCAG
ATATGCAACCGTTTCTGGACGTGGTCAGCTGA

Upstream 100 bases:

>100_bases
AGCGCTGGTCCCGTCATAACGATGCGTGGCGCCCAGGCGTTGACGGACTTCAAACCATGGTCGCCCGCGTCCAAACAGCA
TTGGCGGAGGCCCGGGCGTA

Downstream 100 bases:

>100_bases
CATGAAAGAGAAAATTTCACGGTTATTGAGAAGCGTCCACCTATTGCAGTTTAACTTTTTGGCGACCCGAGTTTCGAGAT
TGCCGGACTCTTCAACAATG

Product: ThiF family protein

Products: NA

Alternate protein names: HesA/MoeB/ThiF Family Protein

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MEALDLILLEPHEALIRSLLTAGAGSERSAYMLFGIADIQVDPWSNQPRRRLVSHRFQSISCHDLVSASARHVTWQTDGF
MRLLNEAKEMGLAPALVHTHPDGQAKFSEQDNRNEAELARTALLKGAPGLISVVIAGNGDIAARFWAQTEKAEDIGRILH
VGPRLHISGVKGAPAGFLDRQVRLFGHEASRQIAGFRCGIAGGGATGSAVLPLLLRLGVQEAIQFEKDIVDETNLNRLHG
ARRSDVDEKMPKTAIHTRTVKESGLGMTLVSVDAWAGNPQTWDALKACDVIFCCTDDHAGRLFLNRFARFYGIPVIDVGL
AMQRRTDTAFDLFARVSTLVPGHSCLLCGGFVDPRRAREEAMRRNDPDAYERLKEEAYVLGEGDPSPAVVTFTTEAAAMA
VNEWLAGVTGLAGEAGMVSTRMRRFHARDERRPFVESQPDCPCCNQPATLGRADMQPFLDVVS

Sequences:

>Translated_463_residues
MEALDLILLEPHEALIRSLLTAGAGSERSAYMLFGIADIQVDPWSNQPRRRLVSHRFQSISCHDLVSASARHVTWQTDGF
MRLLNEAKEMGLAPALVHTHPDGQAKFSEQDNRNEAELARTALLKGAPGLISVVIAGNGDIAARFWAQTEKAEDIGRILH
VGPRLHISGVKGAPAGFLDRQVRLFGHEASRQIAGFRCGIAGGGATGSAVLPLLLRLGVQEAIQFEKDIVDETNLNRLHG
ARRSDVDEKMPKTAIHTRTVKESGLGMTLVSVDAWAGNPQTWDALKACDVIFCCTDDHAGRLFLNRFARFYGIPVIDVGL
AMQRRTDTAFDLFARVSTLVPGHSCLLCGGFVDPRRAREEAMRRNDPDAYERLKEEAYVLGEGDPSPAVVTFTTEAAAMA
VNEWLAGVTGLAGEAGMVSTRMRRFHARDERRPFVESQPDCPCCNQPATLGRADMQPFLDVVS
>Mature_463_residues
MEALDLILLEPHEALIRSLLTAGAGSERSAYMLFGIADIQVDPWSNQPRRRLVSHRFQSISCHDLVSASARHVTWQTDGF
MRLLNEAKEMGLAPALVHTHPDGQAKFSEQDNRNEAELARTALLKGAPGLISVVIAGNGDIAARFWAQTEKAEDIGRILH
VGPRLHISGVKGAPAGFLDRQVRLFGHEASRQIAGFRCGIAGGGATGSAVLPLLLRLGVQEAIQFEKDIVDETNLNRLHG
ARRSDVDEKMPKTAIHTRTVKESGLGMTLVSVDAWAGNPQTWDALKACDVIFCCTDDHAGRLFLNRFARFYGIPVIDVGL
AMQRRTDTAFDLFARVSTLVPGHSCLLCGGFVDPRRAREEAMRRNDPDAYERLKEEAYVLGEGDPSPAVVTFTTEAAAMA
VNEWLAGVTGLAGEAGMVSTRMRRFHARDERRPFVESQPDCPCCNQPATLGRADMQPFLDVVS

Specific function: Unknown

COG id: COG0476

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50629; Mature: 50629

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEALDLILLEPHEALIRSLLTAGAGSERSAYMLFGIADIQVDPWSNQPRRRLVSHRFQSI
CCCCEEEEECCHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHCCC
SCHDLVSASARHVTWQTDGFMRLLNEAKEMGLAPALVHTHPDGQAKFSEQDNRNEAELAR
CHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHH
TALLKGAPGLISVVIAGNGDIAARFWAQTEKAEDIGRILHVGPRLHISGVKGAPAGFLDR
HHHHCCCCCEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHH
QVRLFGHEASRQIAGFRCGIAGGGATGSAVLPLLLRLGVQEAIQFEKDIVDETNLNRLHG
HHHHHCCHHHHHHCCEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHCC
ARRSDVDEKMPKTAIHTRTVKESGLGMTLVSVDAWAGNPQTWDALKACDVIFCCTDDHAG
CCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHCCEEEEECCCCCC
RLFLNRFARFYGIPVIDVGLAMQRRTDTAFDLFARVSTLVPGHSCLLCGGFVDPRRAREE
HHHHHHHHHHHCCCEEECCHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH
AMRRNDPDAYERLKEEAYVLGEGDPSPAVVTFTTEAAAMAVNEWLAGVTGLAGEAGMVST
HHHCCCCHHHHHHHHCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHH
RMRRFHARDERRPFVESQPDCPCCNQPATLGRADMQPFLDVVS
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MEALDLILLEPHEALIRSLLTAGAGSERSAYMLFGIADIQVDPWSNQPRRRLVSHRFQSI
CCCCEEEEECCHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHCCC
SCHDLVSASARHVTWQTDGFMRLLNEAKEMGLAPALVHTHPDGQAKFSEQDNRNEAELAR
CHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHH
TALLKGAPGLISVVIAGNGDIAARFWAQTEKAEDIGRILHVGPRLHISGVKGAPAGFLDR
HHHHCCCCCEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHH
QVRLFGHEASRQIAGFRCGIAGGGATGSAVLPLLLRLGVQEAIQFEKDIVDETNLNRLHG
HHHHHCCHHHHHHCCEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHCC
ARRSDVDEKMPKTAIHTRTVKESGLGMTLVSVDAWAGNPQTWDALKACDVIFCCTDDHAG
CCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHCCEEEEECCCCCC
RLFLNRFARFYGIPVIDVGLAMQRRTDTAFDLFARVSTLVPGHSCLLCGGFVDPRRAREE
HHHHHHHHHHHCCCEEECCHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHH
AMRRNDPDAYERLKEEAYVLGEGDPSPAVVTFTTEAAAMAVNEWLAGVTGLAGEAGMVST
HHHCCCCHHHHHHHHCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHH
RMRRFHARDERRPFVESQPDCPCCNQPATLGRADMQPFLDVVS
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA