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The map label for this gene is yebA [H]

Identifier: 114798467

GI number: 114798467

Start: 2788610

End: 2789827

Strand: Direct

Name: yebA [H]

Synonym: HNE_2628

Alternate gene names: 114798467

Gene position: 2788610-2789827 (Clockwise)

Preceding gene: 114797554

Following gene: 114799073

Centisome position: 75.27

GC content: 62.32

Gene sequence:

>1218_bases
ATGGCGAAGTGGAGTGCCAACCTTAAAGCGACGTTCGACCGCGCTTTTCCGGAACGCCAGATCTATCATCGCAGCGGTGG
TACAGTCCGCTATATTTCCATCTCTCCCTGGCAACAGGCGATGATGGCGGCGGGCGTGACCGCCCTCGCCAGCTGGACCA
TGTTTGCCACGGCAAATTTCGTCGTCGGCGGCGGCCCCGGCACAGCGCAGGCTGGCGAAGGCAAGGAAGTCGCGAAATAT
GAGCGCTGGGTCCAGGACCTGCGCGCCCGCGAATCCCTTCAGCGCACCCTTCTGGAGGAGCGCAGCAAGGAAACAGCCGA
GCTCGAGCAGAAACAGCGCGCGCTTGAAGAACTCCTCAATGAAATGCGCGACGAGGACGGCATGAAGATGTCGGCGCTCG
AAGGCGATGGCGCCGCGCTGCTCGTGGAAGCCACCATCGAGGAAGCTGATCGCCGCCAGTCGCGCGATGCCTACCTCACC
CTCGCCTCGATTGGCGTACCCGCCGCCCGCGGCACGCCCAAGGCCATCGAGTCTGACATGAACATGCTGTTCAATCAGAT
GGAAGACCTCGCCGCTGAGCGCGCCGAACGCGCCCGCGGTGTTCTGGAGCTGACCCAGGTGGCCACCGGCGACCGGATCG
CTGCGCCACAGACGAACATCGGCGGCCCGCTGGTGTCCATCGGTGCACTGACCTCTTCGGCGTCGGAGCCCGCCATCGGC
GGAGATCAGTCCTTCATGACGCGCCTGGCCCAGGCCCGCGCACGCATTGCCGAGATGAAGCATTACGAGCAGATCGTGAA
CGACCTGCCACTGGGCATCCCGATCAGCGTGCCCTTCCGCTATACCAGCCCCTATGGCATTCGCGTCGACCCCTTCACCA
AGCGGCCCGCTGCTCACTGGGGCACGGACTTTGCCGCCTATCGGGATGCGCCGATCGTATCGTCCGGACCCGGCAAGGTG
GTTCATGCCGGGCCGCGCGGCGGATATGGCCTGCTGGTCGAGATCGATCACGGCCACGGCTTCAAATCGCGTTATGGCCA
CCTTCGCTCATATACGGTGAAGAAGGGCGATGTTATAAAGGTTGGGGACCTGGTGGGGCGCATGGGTTCAACGGGGCGCA
GCACCGGGGATCACCTTCATTACGAAGTGTGGTACAATGACAAGCCTTATGACCCTATGAAGTTCCTGAAAGCAGGCAAA
CATGTTCACAAAGAATAA

Upstream 100 bases:

>100_bases
CCTACGCGAATTGGGTATGTATAACGCAGGGTATGGGAGCGCTGCGGAAACATTTTTCTGCGGTAATCGTAAAAAAGTTT
CCAGCTGACAGGTAGCTTGT

Downstream 100 bases:

>100_bases
CAAAACCCCAGCGGCCCCGCCGCCTGAACCCCAGCAGAAGCCGGTGCCAGCCCAGGACGCCATTCGCGGCGCCGCAACCA
AGCCGGCCGCCCGAGCAGCC

Product: M23 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MAKWSANLKATFDRAFPERQIYHRSGGTVRYISISPWQQAMMAAGVTALASWTMFATANFVVGGGPGTAQAGEGKEVAKY
ERWVQDLRARESLQRTLLEERSKETAELEQKQRALEELLNEMRDEDGMKMSALEGDGAALLVEATIEEADRRQSRDAYLT
LASIGVPAARGTPKAIESDMNMLFNQMEDLAAERAERARGVLELTQVATGDRIAAPQTNIGGPLVSIGALTSSASEPAIG
GDQSFMTRLAQARARIAEMKHYEQIVNDLPLGIPISVPFRYTSPYGIRVDPFTKRPAAHWGTDFAAYRDAPIVSSGPGKV
VHAGPRGGYGLLVEIDHGHGFKSRYGHLRSYTVKKGDVIKVGDLVGRMGSTGRSTGDHLHYEVWYNDKPYDPMKFLKAGK
HVHKE

Sequences:

>Translated_405_residues
MAKWSANLKATFDRAFPERQIYHRSGGTVRYISISPWQQAMMAAGVTALASWTMFATANFVVGGGPGTAQAGEGKEVAKY
ERWVQDLRARESLQRTLLEERSKETAELEQKQRALEELLNEMRDEDGMKMSALEGDGAALLVEATIEEADRRQSRDAYLT
LASIGVPAARGTPKAIESDMNMLFNQMEDLAAERAERARGVLELTQVATGDRIAAPQTNIGGPLVSIGALTSSASEPAIG
GDQSFMTRLAQARARIAEMKHYEQIVNDLPLGIPISVPFRYTSPYGIRVDPFTKRPAAHWGTDFAAYRDAPIVSSGPGKV
VHAGPRGGYGLLVEIDHGHGFKSRYGHLRSYTVKKGDVIKVGDLVGRMGSTGRSTGDHLHYEVWYNDKPYDPMKFLKAGK
HVHKE
>Mature_404_residues
AKWSANLKATFDRAFPERQIYHRSGGTVRYISISPWQQAMMAAGVTALASWTMFATANFVVGGGPGTAQAGEGKEVAKYE
RWVQDLRARESLQRTLLEERSKETAELEQKQRALEELLNEMRDEDGMKMSALEGDGAALLVEATIEEADRRQSRDAYLTL
ASIGVPAARGTPKAIESDMNMLFNQMEDLAAERAERARGVLELTQVATGDRIAAPQTNIGGPLVSIGALTSSASEPAIGG
DQSFMTRLAQARARIAEMKHYEQIVNDLPLGIPISVPFRYTSPYGIRVDPFTKRPAAHWGTDFAAYRDAPIVSSGPGKVV
HAGPRGGYGLLVEIDHGHGFKSRYGHLRSYTVKKGDVIKVGDLVGRMGSTGRSTGDHLHYEVWYNDKPYDPMKFLKAGKH
VHKE

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=124, Percent_Identity=44.3548387096774, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI87082174, Length=109, Percent_Identity=32.1100917431193, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1789099, Length=112, Percent_Identity=32.1428571428571, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 44450; Mature: 44319

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKWSANLKATFDRAFPERQIYHRSGGTVRYISISPWQQAMMAAGVTALASWTMFATANF
CCCCCCCCHHHHHHCCCHHHHEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHEEEEE
VVGGGPGTAQAGEGKEVAKYERWVQDLRARESLQRTLLEERSKETAELEQKQRALEELLN
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
EMRDEDGMKMSALEGDGAALLVEATIEEADRRQSRDAYLTLASIGVPAARGTPKAIESDM
HHCCCCCCEEEEECCCCCEEEEEEHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHH
NMLFNQMEDLAAERAERARGVLELTQVATGDRIAAPQTNIGGPLVSIGALTSSASEPAIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHCCCCCCCCC
GDQSFMTRLAQARARIAEMKHYEQIVNDLPLGIPISVPFRYTSPYGIRVDPFTKRPAAHW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEECCCCCEEECCCCCCCCCCC
GTDFAAYRDAPIVSSGPGKVVHAGPRGGYGLLVEIDHGHGFKSRYGHLRSYTVKKGDVIK
CCCHHHHCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCHHHHHCCHHEEEECCCCEEE
VGDLVGRMGSTGRSTGDHLHYEVWYNDKPYDPMKFLKAGKHVHKE
HHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKWSANLKATFDRAFPERQIYHRSGGTVRYISISPWQQAMMAAGVTALASWTMFATANF
CCCCCCCHHHHHHCCCHHHHEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHEEEEE
VVGGGPGTAQAGEGKEVAKYERWVQDLRARESLQRTLLEERSKETAELEQKQRALEELLN
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
EMRDEDGMKMSALEGDGAALLVEATIEEADRRQSRDAYLTLASIGVPAARGTPKAIESDM
HHCCCCCCEEEEECCCCCEEEEEEHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHH
NMLFNQMEDLAAERAERARGVLELTQVATGDRIAAPQTNIGGPLVSIGALTSSASEPAIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHCCCCCCCCC
GDQSFMTRLAQARARIAEMKHYEQIVNDLPLGIPISVPFRYTSPYGIRVDPFTKRPAAHW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEECCCCCEEECCCCCCCCCCC
GTDFAAYRDAPIVSSGPGKVVHAGPRGGYGLLVEIDHGHGFKSRYGHLRSYTVKKGDVIK
CCCHHHHCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCHHHHHCCHHEEEECCCCEEE
VGDLVGRMGSTGRSTGDHLHYEVWYNDKPYDPMKFLKAGKHVHKE
HHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]