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The map label for this gene is ydaL [C]

Identifier: 114798383

GI number: 114798383

Start: 6355

End: 6885

Strand: Direct

Name: ydaL [C]

Synonym: HNE_0009

Alternate gene names: 114798383

Gene position: 6355-6885 (Clockwise)

Preceding gene: 114797762

Following gene: 114798553

Centisome position: 0.17

GC content: 66.48

Gene sequence:

>531_bases
ATGAAATCGCGCCGGCTCAGCGAGGAAGAGACGCGGGCCTGGGCAAAGGTCGCCGCCACGGTGAAGCGTATCGGCCCGCA
GGAAGCCTCCCTGCCGGATTTCCAGGCGGCGTTGGAAGCGGGCGAGCCGGAACTGCGGGAAACAAAGCCGCTGAAGAAGC
CCGCCCCAGTGATCAAGGCCTCTGATCCCCCCGCGCCCAGGCTCCCCATTCCTCCGGCAAACCGGGGCGGCGAAAAGCGC
GTGCGCCGTGGCAAGCTCGACATTGCCGCTACCTTCGATCTTCACGGCCACACCCAGATCAGCGCCGCGCGCGCGCTCCC
GGCATTCCTGATGGACCAGCAGGCGGATGGTGCCCGCTGCGTCCTCGTCATCACGGGGAAGGGCAGGGAAGGGCAGGGCG
TGTTGCGCCGGAACTTCCTGCTATGGCTGGAATCGCCCGAAGCACGCGCCCTCGTGTCGGGCTATGCCGAATCCCATCCC
AAGCATGGCGGCAGCGGCGCGTTCTATGTCTTCCTGAGACGGAAGGCATAA

Upstream 100 bases:

>100_bases
GGGTGCTTTTGCCGCTCACCGTAGCCGAACGCCTCCGTCAGTCGCTCGAATCCGGCCCGGTCGCCGCGCGCACGCCTGCG
CCAGGCGCGGGCTGACCGGC

Downstream 100 bases:

>100_bases
AAAAAGCCGGGCCCCAAAAGGTCCGGCTTTTTTGATCTGACTGTAACGCCGAAGGCTAGTCGAAGTCGCGGAACACGTCT
GCGGCCGAGACGTCCTTCTT

Product: Smr domain-containing protein

Products: NA

Alternate protein names: Smr Domain-Containing Protein; Smr Protein/MutS2 C-Terminal; DNA Repair Protein Smr/MutS Family; Smr Protein; Smr Family Protein; Smr Protein/MutS2 Domain Protein; Small MutS Related Protein; Smr/MutS Family DNA Repair Protein; DNA Repair Protein; Smr Protein/Muts2-Like

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MKSRRLSEEETRAWAKVAATVKRIGPQEASLPDFQAALEAGEPELRETKPLKKPAPVIKASDPPAPRLPIPPANRGGEKR
VRRGKLDIAATFDLHGHTQISAARALPAFLMDQQADGARCVLVITGKGREGQGVLRRNFLLWLESPEARALVSGYAESHP
KHGGSGAFYVFLRRKA

Sequences:

>Translated_176_residues
MKSRRLSEEETRAWAKVAATVKRIGPQEASLPDFQAALEAGEPELRETKPLKKPAPVIKASDPPAPRLPIPPANRGGEKR
VRRGKLDIAATFDLHGHTQISAARALPAFLMDQQADGARCVLVITGKGREGQGVLRRNFLLWLESPEARALVSGYAESHP
KHGGSGAFYVFLRRKA
>Mature_176_residues
MKSRRLSEEETRAWAKVAATVKRIGPQEASLPDFQAALEAGEPELRETKPLKKPAPVIKASDPPAPRLPIPPANRGGEKR
VRRGKLDIAATFDLHGHTQISAARALPAFLMDQQADGARCVLVITGKGREGQGVLRRNFLLWLESPEARALVSGYAESHP
KHGGSGAFYVFLRRKA

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19204; Mature: 19204

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSRRLSEEETRAWAKVAATVKRIGPQEASLPDFQAALEAGEPELRETKPLKKPAPVIKA
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHCCCCCCCCCEEEC
SDPPAPRLPIPPANRGGEKRVRRGKLDIAATFDLHGHTQISAARALPAFLMDQQADGARC
CCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEE
VLVITGKGREGQGVLRRNFLLWLESPEARALVSGYAESHPKHGGSGAFYVFLRRKA
EEEEECCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKSRRLSEEETRAWAKVAATVKRIGPQEASLPDFQAALEAGEPELRETKPLKKPAPVIKA
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHCCCCCCCCCEEEC
SDPPAPRLPIPPANRGGEKRVRRGKLDIAATFDLHGHTQISAARALPAFLMDQQADGARC
CCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEE
VLVITGKGREGQGVLRRNFLLWLESPEARALVSGYAESHPKHGGSGAFYVFLRRKA
EEEEECCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA