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The map label for this gene is yfdE [H]

Identifier: 114798334

GI number: 114798334

Start: 2055960

End: 2057057

Strand: Reverse

Name: yfdE [H]

Synonym: HNE_1983

Alternate gene names: 114798334

Gene position: 2057057-2055960 (Counterclockwise)

Preceding gene: 114800270

Following gene: 114797379

Centisome position: 55.52

GC content: 65.21

Gene sequence:

>1098_bases
ATGGCTCAAGGGCCGCTCGCGGGCGTAAAGATTGTTGAATTTGCGGGCATCGGGCCTGGGCCGTTCTGCGGCATGCTTCT
CTCGGATATGGGCGCGGATGTGATCCGCATCGACCGTCCGGGCAATGGCAAGCCGGGCCGGGCCGAAGATGTGGTCGGCC
GTGGCCGCCGCTCGATTGGCCTCAACCTGAAAGATCCGGCAGATGTCGAAGTCGCCCTGAAGCTGATCGCGCAGGCCGAC
GCCCTGATCGAAGGCTTCCGCCCCGGCGTGATGGAGCGCAACGGCCTTGGCCCGGATGTGGCGCTCGCGCGTAATCCGAA
GCTCGTCTACGGCCGCATGACCGGCTGGGGCCAGACCGGCGCGCTCTCCCATTCCGCAGGCCATGACCTCAACTACATCG
CGATCACCGGCGCCCTCCATGCGATGGGCGATGGCGATGGCCGTCCGCGTCCGCCGCTGAACCTTGTCGGCGATTATGGT
GGCGGCGCGCTCTATCTCGCGATGGGCGTTCTGGCGGCGATCATCAATGTGAAGAATGGCGGTAAGGGCCAGGTGATCGA
CGTGGCGATGTCGGACGGCGCCGCCTCGCTGACGGCCATGTTCTGGGGCATGCGCGCCATGGGCGTGTGGACCGACGACC
GCGAAGCCAACATGCTCGATGGCGGCGCCCACTTCTACGACACCTACGAAACCAAAGACGGCAAGTGGATCTCGCTCGGC
TCCATCGAGCCGCAATTCTACGCCATCCTGCGCGAAAAAGCCGGCCTCACCGACGCCGCCTATGACGCCCAGATGGACCG
CTCCAAATGGCCTGAGCTGAAGAAGAAGGTCATGGCGGCCATCAAGACCAAGACCCAGGCCGAGTGGAACGAGATCATGG
AAGGCACGGACATCTGCTACGCGCCGGTGCTCTCCATGGCCGACGCGCCGACCTACAAGCACAACGTGGATCGCGGCACC
TTCGTCGAGATCGAGGGTGTGGTGCAGCCTGCGCCCGCGCCGCGTTTCTCGGAGACGCCGGGCGCTATTCAGGGCCGCCC
GCCGGGCCTGGGTGAGCATACCGAAGCGATCCTCAAGGATTGGGGCGTTTCCCGCTGA

Upstream 100 bases:

>100_bases
GGGCCGGGAGCTACGTCGCGGCACCCCTTCCTTTTGCGCCTGCCACCCTTAAAGTTCCGCTAACTCGACCATTAACATCA
GGACATGAGGGAGACCTATC

Downstream 100 bases:

>100_bases
TGAGCGCGCTGCCCGGCACCACCGGGCGGCGGCGCATCTATCTGATGCGGCACGGCTTTGTGGACTATACGTCCGCAGCC
GTGCGCGCCGCGCGCGATCC

Product: putative alpha-methylacyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MAQGPLAGVKIVEFAGIGPGPFCGMLLSDMGADVIRIDRPGNGKPGRAEDVVGRGRRSIGLNLKDPADVEVALKLIAQAD
ALIEGFRPGVMERNGLGPDVALARNPKLVYGRMTGWGQTGALSHSAGHDLNYIAITGALHAMGDGDGRPRPPLNLVGDYG
GGALYLAMGVLAAIINVKNGGKGQVIDVAMSDGAASLTAMFWGMRAMGVWTDDREANMLDGGAHFYDTYETKDGKWISLG
SIEPQFYAILREKAGLTDAAYDAQMDRSKWPELKKKVMAAIKTKTQAEWNEIMEGTDICYAPVLSMADAPTYKHNVDRGT
FVEIEGVVQPAPAPRFSETPGAIQGRPPGLGEHTEAILKDWGVSR

Sequences:

>Translated_365_residues
MAQGPLAGVKIVEFAGIGPGPFCGMLLSDMGADVIRIDRPGNGKPGRAEDVVGRGRRSIGLNLKDPADVEVALKLIAQAD
ALIEGFRPGVMERNGLGPDVALARNPKLVYGRMTGWGQTGALSHSAGHDLNYIAITGALHAMGDGDGRPRPPLNLVGDYG
GGALYLAMGVLAAIINVKNGGKGQVIDVAMSDGAASLTAMFWGMRAMGVWTDDREANMLDGGAHFYDTYETKDGKWISLG
SIEPQFYAILREKAGLTDAAYDAQMDRSKWPELKKKVMAAIKTKTQAEWNEIMEGTDICYAPVLSMADAPTYKHNVDRGT
FVEIEGVVQPAPAPRFSETPGAIQGRPPGLGEHTEAILKDWGVSR
>Mature_364_residues
AQGPLAGVKIVEFAGIGPGPFCGMLLSDMGADVIRIDRPGNGKPGRAEDVVGRGRRSIGLNLKDPADVEVALKLIAQADA
LIEGFRPGVMERNGLGPDVALARNPKLVYGRMTGWGQTGALSHSAGHDLNYIAITGALHAMGDGDGRPRPPLNLVGDYGG
GALYLAMGVLAAIINVKNGGKGQVIDVAMSDGAASLTAMFWGMRAMGVWTDDREANMLDGGAHFYDTYETKDGKWISLGS
IEPQFYAILREKAGLTDAAYDAQMDRSKWPELKKKVMAAIKTKTQAEWNEIMEGTDICYAPVLSMADAPTYKHNVDRGTF
VEIEGVVQPAPAPRFSETPGAIQGRPPGLGEHTEAILKDWGVSR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=364, Percent_Identity=44.2307692307692, Blast_Score=330, Evalue=1e-90,
Organism=Homo sapiens, GI266456254, Length=364, Percent_Identity=44.2307692307692, Blast_Score=330, Evalue=1e-90,
Organism=Homo sapiens, GI266458393, Length=284, Percent_Identity=41.5492957746479, Blast_Score=244, Evalue=7e-65,
Organism=Homo sapiens, GI266458397, Length=247, Percent_Identity=45.748987854251, Blast_Score=242, Evalue=4e-64,
Organism=Homo sapiens, GI300863128, Length=383, Percent_Identity=30.8093994778068, Blast_Score=149, Evalue=4e-36,
Organism=Homo sapiens, GI300863124, Length=409, Percent_Identity=29.0953545232274, Blast_Score=143, Evalue=2e-34,
Organism=Homo sapiens, GI42822893, Length=139, Percent_Identity=45.3237410071942, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI266458395, Length=139, Percent_Identity=45.3237410071942, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI13376042, Length=409, Percent_Identity=26.8948655256724, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI300863126, Length=151, Percent_Identity=37.0860927152318, Blast_Score=100, Evalue=1e-21,
Organism=Escherichia coli, GI87082093, Length=383, Percent_Identity=26.1096605744125, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788717, Length=423, Percent_Identity=26.0047281323877, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1786222, Length=387, Percent_Identity=28.1653746770026, Blast_Score=95, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI115535051, Length=335, Percent_Identity=34.6268656716418, Blast_Score=211, Evalue=6e-55,
Organism=Caenorhabditis elegans, GI32564160, Length=332, Percent_Identity=34.9397590361446, Blast_Score=209, Evalue=2e-54,
Organism=Drosophila melanogaster, GI24585488, Length=339, Percent_Identity=40.4129793510324, Blast_Score=295, Evalue=4e-80,
Organism=Drosophila melanogaster, GI24648431, Length=382, Percent_Identity=28.0104712041885, Blast_Score=125, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 38847; Mature: 38716

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGPLAGVKIVEFAGIGPGPFCGMLLSDMGADVIRIDRPGNGKPGRAEDVVGRGRRSIG
CCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCCHHCC
LNLKDPADVEVALKLIAQADALIEGFRPGVMERNGLGPDVALARNPKLVYGRMTGWGQTG
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCC
ALSHSAGHDLNYIAITGALHAMGDGDGRPRPPLNLVGDYGGGALYLAMGVLAAIINVKNG
CCCCCCCCCCEEEEEECEEEECCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCC
GKGQVIDVAMSDGAASLTAMFWGMRAMGVWTDDREANMLDGGAHFYDTYETKDGKWISLG
CCCCEEEEEECCCHHHHHHHHHHHHHEEEECCCCCCCEECCCCEEEECEECCCCCEEEEC
SIEPQFYAILREKAGLTDAAYDAQMDRSKWPELKKKVMAAIKTKTQAEWNEIMEGTDICY
CCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
APVLSMADAPTYKHNVDRGTFVEIEGVVQPAPAPRFSETPGAIQGRPPGLGEHTEAILKD
HHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
WGVSR
CCCCC
>Mature Secondary Structure 
AQGPLAGVKIVEFAGIGPGPFCGMLLSDMGADVIRIDRPGNGKPGRAEDVVGRGRRSIG
CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCCHHCC
LNLKDPADVEVALKLIAQADALIEGFRPGVMERNGLGPDVALARNPKLVYGRMTGWGQTG
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCC
ALSHSAGHDLNYIAITGALHAMGDGDGRPRPPLNLVGDYGGGALYLAMGVLAAIINVKNG
CCCCCCCCCCEEEEEECEEEECCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCC
GKGQVIDVAMSDGAASLTAMFWGMRAMGVWTDDREANMLDGGAHFYDTYETKDGKWISLG
CCCCEEEEEECCCHHHHHHHHHHHHHEEEECCCCCCCEECCCCEEEECEECCCCCEEEEC
SIEPQFYAILREKAGLTDAAYDAQMDRSKWPELKKKVMAAIKTKTQAEWNEIMEGTDICY
CCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
APVLSMADAPTYKHNVDRGTFVEIEGVVQPAPAPRFSETPGAIQGRPPGLGEHTEAILKD
HHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
WGVSR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]