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The map label for this gene is 114798276

Identifier: 114798276

GI number: 114798276

Start: 1668816

End: 1669400

Strand: Reverse

Name: 114798276

Synonym: HNE_1632

Alternate gene names: NA

Gene position: 1669400-1668816 (Counterclockwise)

Preceding gene: 114798349

Following gene: 114798837

Centisome position: 45.06

GC content: 58.46

Gene sequence:

>585_bases
ATGAGCCAACCGGGTGATATATCGGCCAAGCAGCTGTTGGATGCTTGGCGGGGGGGAGACCTTGCCGCCCGCGACCAGCT
ATTCACCCAGCTTTACTCCGAACTTCGCCAGATTTCTGCCGGGCTCATTCGTTCGGAGCGTAATCTGTCGCTGTCGACCG
GCGATCTGGTGAATGAGGCTGTTATTCGCCTGATGCGTGTGGATCAGATCGAGTGGGCTGATAAGGTGCATTTCCTGGCA
CTCGCGGCGCGGGCGATGCGCCGGGTGCTGATTGATCACGCGCGCAAGAAGCGTTCGGACAAGCGCCACCATCAGAAGGT
AACGCTTATTTCGAGGCTGTCGGATGGCAATGCCGACCGGATCGAGATGGATGTTCTGGAAAAGGCGCTGATCCGTCTGA
ACGTCATCGATGAAGAGAAGGCCGAGATTGTCGAGCTGCGGTATTTCGGCGGCATGACGCTGGAAGAGATTGCCGAGATC
AGAGGCGTGTCTGAGGCAACCATCAAACGCAACTGGCGCGCCGCGCGCGCCTGGCTGCTCGATTGCCTCAATGAAGCGAG
GCAGGATGAGCACCGGATCGATTGA

Upstream 100 bases:

>100_bases
CGCGGGATTTCCGGTCACCGGTTCAGAAAAATAAATTTGAGAACGGGTTTGCGCCTTGTGGCGGCACGGAATTTGCGACA
GTTTCGGCGGGGAGGTGGTG

Downstream 100 bases:

>100_bases
TCGTTTTGCCCTGGAGCTGCTTTCCCAGGCACTGGATATGCCTTCCGATCAGCGTGAGGATTGGGTGCGCAACAAATGCG
CCGGAGACGCTGCGCTGGAG

Product: ECF sigma factor family protein

Products: NA

Alternate protein names: Sigma Factor ECF-Like Family Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Sigma Factor Family Protein; Sigma Factor; Extracytoplasmic Sigma Factor ECF; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-E Factor; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MSQPGDISAKQLLDAWRGGDLAARDQLFTQLYSELRQISAGLIRSERNLSLSTGDLVNEAVIRLMRVDQIEWADKVHFLA
LAARAMRRVLIDHARKKRSDKRHHQKVTLISRLSDGNADRIEMDVLEKALIRLNVIDEEKAEIVELRYFGGMTLEEIAEI
RGVSEATIKRNWRAARAWLLDCLNEARQDEHRID

Sequences:

>Translated_194_residues
MSQPGDISAKQLLDAWRGGDLAARDQLFTQLYSELRQISAGLIRSERNLSLSTGDLVNEAVIRLMRVDQIEWADKVHFLA
LAARAMRRVLIDHARKKRSDKRHHQKVTLISRLSDGNADRIEMDVLEKALIRLNVIDEEKAEIVELRYFGGMTLEEIAEI
RGVSEATIKRNWRAARAWLLDCLNEARQDEHRID
>Mature_193_residues
SQPGDISAKQLLDAWRGGDLAARDQLFTQLYSELRQISAGLIRSERNLSLSTGDLVNEAVIRLMRVDQIEWADKVHFLAL
AARAMRRVLIDHARKKRSDKRHHQKVTLISRLSDGNADRIEMDVLEKALIRLNVIDEEKAEIVELRYFGGMTLEEIAEIR
GVSEATIKRNWRAARAWLLDCLNEARQDEHRID

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22310; Mature: 22179

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPGDISAKQLLDAWRGGDLAARDQLFTQLYSELRQISAGLIRSERNLSLSTGDLVNEA
CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
VIRLMRVDQIEWADKVHFLALAARAMRRVLIDHARKKRSDKRHHQKVTLISRLSDGNADR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
IEMDVLEKALIRLNVIDEEKAEIVELRYFGGMTLEEIAEIRGVSEATIKRNWRAARAWLL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
DCLNEARQDEHRID
HHHHHHHHHHCCCC
>Mature Secondary Structure 
SQPGDISAKQLLDAWRGGDLAARDQLFTQLYSELRQISAGLIRSERNLSLSTGDLVNEA
CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
VIRLMRVDQIEWADKVHFLALAARAMRRVLIDHARKKRSDKRHHQKVTLISRLSDGNADR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
IEMDVLEKALIRLNVIDEEKAEIVELRYFGGMTLEEIAEIRGVSEATIKRNWRAARAWLL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
DCLNEARQDEHRID
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA