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The map label for this gene is cspA [C]

Identifier: 114798263

GI number: 114798263

Start: 2035400

End: 2035927

Strand: Reverse

Name: cspA [C]

Synonym: HNE_1966

Alternate gene names: 114798263

Gene position: 2035927-2035400 (Counterclockwise)

Preceding gene: 114797921

Following gene: 114798804

Centisome position: 54.95

GC content: 57.77

Gene sequence:

>528_bases
ATGACGAAGATTGCAGCCAAAACCGAATCGGAGGCCACGGCCAGCGAGCCTGCTGTGCGCGTGATCGGGCGGATCAAATG
GTTCGACAGTGCCAAAGGCTATGGATTCATCGTCGCCGAGTCTTCCTCTGAAGCGGATATGACCGGCGATGTGTTGCTGC
ACATCTCTTGCCTGCGCGATTATGGCGAGAACTATGCCGATGAAGGCGCCAAGATCGTCTGTGATGCCGTGCGCAAGGAG
CGGGGATGGCAAACCGCTCACATCATCGAGATGGAGCGTCCGCGCGCTGTGGTGGCGCAGGAAAAGGGCCTTCGGCCCGA
TTATGAGACCGTTACCCTGAAATGGTTCAACCGGACGCGGGGCTATGGGTTCGTTCTGCGGGATGGGCAAGAGACTGACA
TATTCGTGCACGCCGTCGCTTTTCGGAAAGCAGGCTACGAAGACATTGAGCCAGGCACGCGGATCGACGTGATTATTGAG
GTTGGCGCCAAGGGCGAACATGTCTCATTCGTAAAACCGCGCCGGTAG

Upstream 100 bases:

>100_bases
TTCTGGACGCTTGTGTCATTTCTGACCCGGTTTCTGGGTTAAGATTGGGTGACAAGCGTTCTGTCACGCTCTAGATTTCC
CAATTGGGGAATGTGGGTTG

Downstream 100 bases:

>100_bases
AACCGCGCTCGGCGCTTGCCGCCTGCAAAAGGCATGGATAAACCAGCGGCATGATGCGCTTCATCCTTTCCTTCGTTTTC
GTCGCGGCCCTGTTTGTTCA

Product: cold shock DNA-binding protein

Products: NA

Alternate protein names: Transcriptional Regulator Cold Shock Protein; Cold Shock-Like Protein CspA; Cold Shock-Like Protein CspE

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MTKIAAKTESEATASEPAVRVIGRIKWFDSAKGYGFIVAESSSEADMTGDVLLHISCLRDYGENYADEGAKIVCDAVRKE
RGWQTAHIIEMERPRAVVAQEKGLRPDYETVTLKWFNRTRGYGFVLRDGQETDIFVHAVAFRKAGYEDIEPGTRIDVIIE
VGAKGEHVSFVKPRR

Sequences:

>Translated_175_residues
MTKIAAKTESEATASEPAVRVIGRIKWFDSAKGYGFIVAESSSEADMTGDVLLHISCLRDYGENYADEGAKIVCDAVRKE
RGWQTAHIIEMERPRAVVAQEKGLRPDYETVTLKWFNRTRGYGFVLRDGQETDIFVHAVAFRKAGYEDIEPGTRIDVIIE
VGAKGEHVSFVKPRR
>Mature_174_residues
TKIAAKTESEATASEPAVRVIGRIKWFDSAKGYGFIVAESSSEADMTGDVLLHISCLRDYGENYADEGAKIVCDAVRKER
GWQTAHIIEMERPRAVVAQEKGLRPDYETVTLKWFNRTRGYGFVLRDGQETDIFVHAVAFRKAGYEDIEPGTRIDVIIEV
GAKGEHVSFVKPRR

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19625; Mature: 19494

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKIAAKTESEATASEPAVRVIGRIKWFDSAKGYGFIVAESSSEADMTGDVLLHISCLRD
CCCCCCCCCCCCCCCCCCEEEHEEEEEECCCCCCEEEEECCCCCCCCCCHHEEHHHHHHH
YGENYADEGAKIVCDAVRKERGWQTAHIIEMERPRAVVAQEKGLRPDYETVTLKWFNRTR
HCCCCCCCCCEEHHHHHHHHCCCCEEEEEEECCCCEEEEHHCCCCCCCEEEEEEEECCCC
GYGFVLRDGQETDIFVHAVAFRKAGYEDIEPGTRIDVIIEVGAKGEHVSFVKPRR
CEEEEEECCCCCEEEEEEEEHHHCCCCCCCCCCEEEEEEEECCCCCEEEEECCCC
>Mature Secondary Structure 
TKIAAKTESEATASEPAVRVIGRIKWFDSAKGYGFIVAESSSEADMTGDVLLHISCLRD
CCCCCCCCCCCCCCCCCEEEHEEEEEECCCCCCEEEEECCCCCCCCCCHHEEHHHHHHH
YGENYADEGAKIVCDAVRKERGWQTAHIIEMERPRAVVAQEKGLRPDYETVTLKWFNRTR
HCCCCCCCCCEEHHHHHHHHCCCCEEEEEEECCCCEEEEHHCCCCCCCEEEEEEEECCCC
GYGFVLRDGQETDIFVHAVAFRKAGYEDIEPGTRIDVIIEVGAKGEHVSFVKPRR
CEEEEEECCCCCEEEEEEEEHHHCCCCCCCCCCEEEEEEEECCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA