| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
Click here to switch to the map view.
The map label for this gene is crp [C]
Identifier: 114798151
GI number: 114798151
Start: 1495006
End: 1495707
Strand: Reverse
Name: crp [C]
Synonym: HNE_1469
Alternate gene names: 114798151
Gene position: 1495707-1495006 (Counterclockwise)
Preceding gene: 114797371
Following gene: 114799943
Centisome position: 40.37
GC content: 58.12
Gene sequence:
>702_bases ATGCATATTGCAGGTCAGCTTAACTGGATAAATGAGCTCCCCGCCCCGGCGCGGGACGCTATACGCAATCGGTTCGTTTA CCGTGACCTTGAGCCCGGCGAGACCATTAAGGAAAGCGGTCAGCCCGCAGAGGGCATGTACCAGGTCCAGTCCGGCTACA TCAAACTGCTGGCGGATCGCCCGGATGGGGAGCAATCCCTGCTGCTGATCTACATTCGCGGCAACAGCTTTGGGGAATCG ACCCTGATTGCCCGACGCCCGCACCATCACACAACGATTGCCGCCAGCCCTGCGCGCATCGGTTTCCTGAAACAGAACGA CTTTGACGAGCTCTACCGTACCTACCCGTCCATTCCCGAAGCGCTCTGCCGAAAATTCGCGACCGCCCTCAGCTCCATGA TTGCCTATCGGGAAAAGCAGAATGAAACGACGGTCGCCCAAAGGGTTGCCCTGGTCCTGCGCAATCTGGCAGAGATGAGC GAAACACCCCAGATCGGCGGCCGCCGCGCCATTGATATCCCTATCACGATTGGGGAACTGTCCAGTTTCCTTGGCCTCAC TCGCCAGACTGTCCAGAAGGAAATATCCCTCCTCAAACGCCGCAACCTGATATCGAAATCGCAAGGCGCCTGGACCGTGT TGGATATGGCCCTGCTCAGAACGCTCGCTCCGGCAGAGGACGTTCCGGACCTGCTAACATAA
Upstream 100 bases:
>100_bases AAGGATTTTACATTTTCGGATAAAAGGCGTTCTGTCCGGATATGCCGAAGGGGTTTGCCCTCACAGCGCCCCCGGGGCAG ACCGTGTTCAGGAGGACGCC
Downstream 100 bases:
>100_bases GGATCACCGTCTACGGATCATTTGTTGTCTGCCCGGCAGACAATGCGGACTTCTGGCTTTTCAGAATCTTCGACCAGAGC GCCTCGGCGGCAGGAGACTG
Product: cyclic nucleotide-binding protein
Products: NA
Alternate protein names: Transcriptional Regulator; Crp/FNR Family Transcriptional Regulator; CRP/FNR Family Transcriptional Regulator; Transcription Regulator Protein; Catabolite Gene Activator; Crp/Fnr Family Transcriptional Regulator
Number of amino acids: Translated: 233; Mature: 233
Protein sequence:
>233_residues MHIAGQLNWINELPAPARDAIRNRFVYRDLEPGETIKESGQPAEGMYQVQSGYIKLLADRPDGEQSLLLIYIRGNSFGES TLIARRPHHHTTIAASPARIGFLKQNDFDELYRTYPSIPEALCRKFATALSSMIAYREKQNETTVAQRVALVLRNLAEMS ETPQIGGRRAIDIPITIGELSSFLGLTRQTVQKEISLLKRRNLISKSQGAWTVLDMALLRTLAPAEDVPDLLT
Sequences:
>Translated_233_residues MHIAGQLNWINELPAPARDAIRNRFVYRDLEPGETIKESGQPAEGMYQVQSGYIKLLADRPDGEQSLLLIYIRGNSFGES TLIARRPHHHTTIAASPARIGFLKQNDFDELYRTYPSIPEALCRKFATALSSMIAYREKQNETTVAQRVALVLRNLAEMS ETPQIGGRRAIDIPITIGELSSFLGLTRQTVQKEISLLKRRNLISKSQGAWTVLDMALLRTLAPAEDVPDLLT >Mature_233_residues MHIAGQLNWINELPAPARDAIRNRFVYRDLEPGETIKESGQPAEGMYQVQSGYIKLLADRPDGEQSLLLIYIRGNSFGES TLIARRPHHHTTIAASPARIGFLKQNDFDELYRTYPSIPEALCRKFATALSSMIAYREKQNETTVAQRVALVLRNLAEMS ETPQIGGRRAIDIPITIGELSSFLGLTRQTVQKEISLLKRRNLISKSQGAWTVLDMALLRTLAPAEDVPDLLT
Specific function: This Protein Complexes With Cyclic AMP And Binds To Specific DNA Sites Near The Promoter To Regulate The Transcription Of Several Catabolite-Sensitive Operons. The Protein Induces A Severe Bend In The DNA. Acts As A Negative Regulator Of Its Own Synthesi
COG id: COG0664
COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26099; Mature: 26099
Theoretical pI: Translated: 8.95; Mature: 8.95
Prosite motif: PS50042 CNMP_BINDING_3 ; PS51063 HTH_CRP_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHIAGQLNWINELPAPARDAIRNRFVYRDLEPGETIKESGQPAEGMYQVQSGYIKLLADR CCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHCCEEEEEECC PDGEQSLLLIYIRGNSFGESTLIARRPHHHTTIAASPARIGFLKQNDFDELYRTYPSIPE CCCCCCEEEEEEECCCCCCCCEEEECCCCCCEEECCCHHEEECCCCCHHHHHHHCCCHHH ALCRKFATALSSMIAYREKQNETTVAQRVALVLRNLAEMSETPQIGGRRAIDIPITIGEL HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECEEHHHH SSFLGLTRQTVQKEISLLKRRNLISKSQGAWTVLDMALLRTLAPAEDVPDLLT HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHCC >Mature Secondary Structure MHIAGQLNWINELPAPARDAIRNRFVYRDLEPGETIKESGQPAEGMYQVQSGYIKLLADR CCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHCCEEEEEECC PDGEQSLLLIYIRGNSFGESTLIARRPHHHTTIAASPARIGFLKQNDFDELYRTYPSIPE CCCCCCEEEEEEECCCCCCCCEEEECCCCCCEEECCCHHEEECCCCCHHHHHHHCCCHHH ALCRKFATALSSMIAYREKQNETTVAQRVALVLRNLAEMSETPQIGGRRAIDIPITIGEL HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECEEHHHH SSFLGLTRQTVQKEISLLKRRNLISKSQGAWTVLDMALLRTLAPAEDVPDLLT HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA