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The map label for this gene is yhcM [H]

Identifier: 114798141

GI number: 114798141

Start: 325779

End: 326921

Strand: Reverse

Name: yhcM [H]

Synonym: HNE_0331

Alternate gene names: 114798141

Gene position: 326921-325779 (Counterclockwise)

Preceding gene: 114799025

Following gene: 114797392

Centisome position: 8.82

GC content: 64.39

Gene sequence:

>1143_bases
ATGGCGGGTGTGCGCGCGAAGTATGAGGCGAAGGTGGCCAGCGGCGCGCTGACGGTTGATCCCGTTCAGCTGGAAGCAGC
CGACCTGCTCGACGGGCTGGCCGAGCGCCTCGCCAATCAGCCCAAGCCGGGCTGGTTTTCAAAGCCTGAGCCGGTGCGCG
GGGTTTACCTCTGGGGCGGGGTTGGCCGGGGCAAGTCGATGCTGATGGACCTGTTCTTTGCGCAGGCGGCGACAAAGCCC
AAACGCCGCGTACACTTCCATGAGTTCATGGCGCAGGTGCACGAGCGCCTCGATGTCTGGCGGAAGATGACCGATCAGGA
AAAGAAGCGCTCGGACTGGCGGGTGAAATCTGCCGGGGATGACCCGATCCCGCCGGTGGCCAAGCAGATTGCGGCCGAGG
CGAAGCTGCTGTGCTTTGATGAGTTTCAGGTGTCCCAGATTGCCGATGCGATGGTCCTGGGGCGGCTGTTTGACCAGCTG
TTCCAGCGAGGCGTGACGGTGGTGGCCACGTCCAACCGCCATCCGGACGCGCTCTACAAGGACGGCATCAACCGCCAGCT
TTTCCTGCCCTTTATCAAGGAGTTGAAAGAGCGCTGCGAGGTTCTGGAGCTGGTATCGGCGCGCGATTACCGGCTCGACC
GGCTGGTGGAGGCGCCGGTCTGGTATGCCCCGCTGGGGGCAGAGAGCGCTGCAGCGATGGACCGGGCCTGGGACCGGCTG
ACGCTGGGGGCAGAGCCCCAGCACTGCCTGCTGACGGTGAAGGGGCGCAAGCTGGAAGTGAACCGGGAAGCGGCCGGGGT
GGCGCGGTTTACCTTTGAGGAGCTGTGCGCGCGGCCACTGGGGCCGATCGACTATCTGGCCATAGCCGGCACGTTTCATA
CGGTGATGCTGGAGGGCATTCCCCTGCTCTCGCCGGACAAGCGGAACGAGGCGATGCGCTTTACCGGACTGATCGACGCG
CTCTACGAAGCCAAGGTGAAGCTGGTGGCCAGCGCGGCGGCAGAGCCCGGCGCGCTGTACCCCGAGGGCGATGGATCGTT
CGAGTTCGAGCGGACGGCGAGCCGGCTTTTCGAGATGCGGTCGAAAGATTATCTCGCCCAGGCGCGCGAAGAGATCGATC
TGGACAACCTGTCTGAAAATTAA

Upstream 100 bases:

>100_bases
AGTGGTGGGCGTTGTGACGACGCTGCTGGTGGAACCGCGGGTGTGGACCTCCTTCATGGCGCAGATCGCCGAGAAGTTCG
GCTGAGGCAGGATCAGGGCA

Downstream 100 bases:

>100_bases
GGACAATTTGGGTCACCGGGCGGTCAAACCGGTGCCAATCGGCGGACATGCCGGGACACGTTTGGGACGAATCGGGACAT
TTCAGGACAGTTCGGGACAC

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 379

Protein sequence:

>380_residues
MAGVRAKYEAKVASGALTVDPVQLEAADLLDGLAERLANQPKPGWFSKPEPVRGVYLWGGVGRGKSMLMDLFFAQAATKP
KRRVHFHEFMAQVHERLDVWRKMTDQEKKRSDWRVKSAGDDPIPPVAKQIAAEAKLLCFDEFQVSQIADAMVLGRLFDQL
FQRGVTVVATSNRHPDALYKDGINRQLFLPFIKELKERCEVLELVSARDYRLDRLVEAPVWYAPLGAESAAAMDRAWDRL
TLGAEPQHCLLTVKGRKLEVNREAAGVARFTFEELCARPLGPIDYLAIAGTFHTVMLEGIPLLSPDKRNEAMRFTGLIDA
LYEAKVKLVASAAAEPGALYPEGDGSFEFERTASRLFEMRSKDYLAQAREEIDLDNLSEN

Sequences:

>Translated_380_residues
MAGVRAKYEAKVASGALTVDPVQLEAADLLDGLAERLANQPKPGWFSKPEPVRGVYLWGGVGRGKSMLMDLFFAQAATKP
KRRVHFHEFMAQVHERLDVWRKMTDQEKKRSDWRVKSAGDDPIPPVAKQIAAEAKLLCFDEFQVSQIADAMVLGRLFDQL
FQRGVTVVATSNRHPDALYKDGINRQLFLPFIKELKERCEVLELVSARDYRLDRLVEAPVWYAPLGAESAAAMDRAWDRL
TLGAEPQHCLLTVKGRKLEVNREAAGVARFTFEELCARPLGPIDYLAIAGTFHTVMLEGIPLLSPDKRNEAMRFTGLIDA
LYEAKVKLVASAAAEPGALYPEGDGSFEFERTASRLFEMRSKDYLAQAREEIDLDNLSEN
>Mature_379_residues
AGVRAKYEAKVASGALTVDPVQLEAADLLDGLAERLANQPKPGWFSKPEPVRGVYLWGGVGRGKSMLMDLFFAQAATKPK
RRVHFHEFMAQVHERLDVWRKMTDQEKKRSDWRVKSAGDDPIPPVAKQIAAEAKLLCFDEFQVSQIADAMVLGRLFDQLF
QRGVTVVATSNRHPDALYKDGINRQLFLPFIKELKERCEVLELVSARDYRLDRLVEAPVWYAPLGAESAAAMDRAWDRLT
LGAEPQHCLLTVKGRKLEVNREAAGVARFTFEELCARPLGPIDYLAIAGTFHTVMLEGIPLLSPDKRNEAMRFTGLIDAL
YEAKVKLVASAAAEPGALYPEGDGSFEFERTASRLFEMRSKDYLAQAREEIDLDNLSEN

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=357, Percent_Identity=41.4565826330532, Blast_Score=259, Evalue=4e-69,
Organism=Escherichia coli, GI1789627, Length=377, Percent_Identity=38.4615384615385, Blast_Score=251, Evalue=7e-68,
Organism=Caenorhabditis elegans, GI17505769, Length=355, Percent_Identity=35.4929577464789, Blast_Score=226, Evalue=2e-59,
Organism=Saccharomyces cerevisiae, GI6320783, Length=318, Percent_Identity=36.7924528301887, Blast_Score=194, Evalue=2e-50,
Organism=Drosophila melanogaster, GI20129913, Length=434, Percent_Identity=36.405529953917, Blast_Score=229, Evalue=3e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42567; Mature: 42436

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGVRAKYEAKVASGALTVDPVQLEAADLLDGLAERLANQPKPGWFSKPEPVRGVYLWGG
CCCCCCHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC
VGRGKSMLMDLFFAQAATKPKRRVHFHEFMAQVHERLDVWRKMTDQEKKRSDWRVKSAGD
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC
DPIPPVAKQIAAEAKLLCFDEFQVSQIADAMVLGRLFDQLFQRGVTVVATSNRHPDALYK
CCCCHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHH
DGINRQLFLPFIKELKERCEVLELVSARDYRLDRLVEAPVWYAPLGAESAAAMDRAWDRL
CCCCCEEHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHE
TLGAEPQHCLLTVKGRKLEVNREAAGVARFTFEELCARPLGPIDYLAIAGTFHTVMLEGI
ECCCCCCEEEEEECCCEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
PLLSPDKRNEAMRFTGLIDALYEAKVKLVASAAAEPGALYPEGDGSFEFERTASRLFEMR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
SKDYLAQAREEIDLDNLSEN
HHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AGVRAKYEAKVASGALTVDPVQLEAADLLDGLAERLANQPKPGWFSKPEPVRGVYLWGG
CCCCCHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC
VGRGKSMLMDLFFAQAATKPKRRVHFHEFMAQVHERLDVWRKMTDQEKKRSDWRVKSAGD
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCC
DPIPPVAKQIAAEAKLLCFDEFQVSQIADAMVLGRLFDQLFQRGVTVVATSNRHPDALYK
CCCCHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHH
DGINRQLFLPFIKELKERCEVLELVSARDYRLDRLVEAPVWYAPLGAESAAAMDRAWDRL
CCCCCEEHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHE
TLGAEPQHCLLTVKGRKLEVNREAAGVARFTFEELCARPLGPIDYLAIAGTFHTVMLEGI
ECCCCCCEEEEEECCCEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
PLLSPDKRNEAMRFTGLIDALYEAKVKLVASAAAEPGALYPEGDGSFEFERTASRLFEMR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
SKDYLAQAREEIDLDNLSEN
HHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]