| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is lptG [H]
Identifier: 114798132
GI number: 114798132
Start: 1619137
End: 1620192
Strand: Direct
Name: lptG [H]
Synonym: HNE_1587
Alternate gene names: 114798132
Gene position: 1619137-1620192 (Clockwise)
Preceding gene: 114797170
Following gene: 114799597
Centisome position: 43.7
GC content: 58.14
Gene sequence:
>1056_bases ATGACATCCCGTCTCAGCCGGTATCTTTCGTGGCTGTTCCTGCAGCGTCTGCTCGTAACCGTTTTTGCATTGGTTGCGTT GCTTGGCGTGCTCGATGCCTTGAGCAACGCGGACAAGCTTCCTGCCGGCGCAGGTTTTGAAGGTCAGATGCGCTATATGT GGCTGCGCCTGCCGGCCCTGTTTGACCGGATTGTGGTCTTTGCTTTCCTTCTGGCGGCGCTTTTGACGTATGCCTCACTG ATCCGCCGCAATGAACTCGTAGCTATCTCGGCAGCCGGCATTTCCGTGTTCGGACAGATGCGAACGCTGATCCCGGTGGT GTTTCTGACGGCCGTTGCAGCCGCATTCATTATTGATACGGTTGGTCCGCCAGCGAGCCGGAGCCTGTTGGCCTGGCTCG GTCCGGAAGCGCTCCAGGAAGACGCGCAGGTTCCCGAAGAACTCTGGCTGTCGGATGGAAAATTCCTGATCGAACTCAAA AGCATGCAGGCTGAGGAGTTGACCGGAATCACCATCTTTGAGCGCAATGCTGAAGGCGCTGTCGTGGCGATCACGACCGC AGAAACCGCGCGGCCAGCAGACGGCGGCTGGGCACTTTCCGGTACAGGGCAGCGGCGTTTTGATGGAGAGCCGCCGACAG ATATGACGTTCTGGACAAGTCCCCAAACGCCCGAGAGCCTTCAGCTACTGCTTTCGCCTCCGCGTGATCTCGCCATCTCG AATCTGATTGCGCTCAGCGAAATGCGCGGTTCAGGCAGTCGGCCATCGGGTGCCTATGAGCTATGGGCGCTCAATCGGTT CCTGCTGCCGCTCACTGCAGTCGGATTTCTGCTTTTGGCGGTTCCGGTGATGCAGGTTTATGGCCGCCGATCGAACGCGG ATATTGCCGTCGCCGCCGGGGTCGCCGTTGGCTTTTTTTACATGGTGGTAGACGGCATATTGAAAACGCTGGCTGAGAAC GGAAGCATCAGCCCTATTCTGGCGGTCGCTCTGCCGATCCTGGCGCTATTCCTGGGAAGTATGTGGCTCGCGCTAGAACG GGAAATCAGAAAATGA
Upstream 100 bases:
>100_bases TTCGCCGGCTTGCTGAAGGCGGGATCATTACCAACCGCCCCAGAATTGCGGCGCGTCCCGGAACGGACTATGCGAGTGCC CTCGCCGGGAAACCGAGAAC
Downstream 100 bases:
>100_bases GCCCGCGGATCGGCCTCATCGTCAGTCCGCTCAGTCATACAGTGCAGCGAAAGGGTTCCATCCTTGAGCGTGTGAGTACG CATGTCGAAAATGCGGAACT
Product: putative permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 351; Mature: 350
Protein sequence:
>351_residues MTSRLSRYLSWLFLQRLLVTVFALVALLGVLDALSNADKLPAGAGFEGQMRYMWLRLPALFDRIVVFAFLLAALLTYASL IRRNELVAISAAGISVFGQMRTLIPVVFLTAVAAAFIIDTVGPPASRSLLAWLGPEALQEDAQVPEELWLSDGKFLIELK SMQAEELTGITIFERNAEGAVVAITTAETARPADGGWALSGTGQRRFDGEPPTDMTFWTSPQTPESLQLLLSPPRDLAIS NLIALSEMRGSGSRPSGAYELWALNRFLLPLTAVGFLLLAVPVMQVYGRRSNADIAVAAGVAVGFFYMVVDGILKTLAEN GSISPILAVALPILALFLGSMWLALEREIRK
Sequences:
>Translated_351_residues MTSRLSRYLSWLFLQRLLVTVFALVALLGVLDALSNADKLPAGAGFEGQMRYMWLRLPALFDRIVVFAFLLAALLTYASL IRRNELVAISAAGISVFGQMRTLIPVVFLTAVAAAFIIDTVGPPASRSLLAWLGPEALQEDAQVPEELWLSDGKFLIELK SMQAEELTGITIFERNAEGAVVAITTAETARPADGGWALSGTGQRRFDGEPPTDMTFWTSPQTPESLQLLLSPPRDLAIS NLIALSEMRGSGSRPSGAYELWALNRFLLPLTAVGFLLLAVPVMQVYGRRSNADIAVAAGVAVGFFYMVVDGILKTLAEN GSISPILAVALPILALFLGSMWLALEREIRK >Mature_350_residues TSRLSRYLSWLFLQRLLVTVFALVALLGVLDALSNADKLPAGAGFEGQMRYMWLRLPALFDRIVVFAFLLAALLTYASLI RRNELVAISAAGISVFGQMRTLIPVVFLTAVAAAFIIDTVGPPASRSLLAWLGPEALQEDAQVPEELWLSDGKFLIELKS MQAEELTGITIFERNAEGAVVAITTAETARPADGGWALSGTGQRRFDGEPPTDMTFWTSPQTPESLQLLLSPPRDLAISN LIALSEMRGSGSRPSGAYELWALNRFLLPLTAVGFLLLAVPVMQVYGRRSNADIAVAAGVAVGFFYMVVDGILKTLAENG SISPILAVALPILALFLGSMWLALEREIRK
Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]
COG id: COG0795
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptF/lptG family [H]
Homologues:
Organism=Escherichia coli, GI87082400, Length=364, Percent_Identity=27.1978021978022, Blast_Score=89, Evalue=6e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005495 [H]
Pfam domain/function: PF03739 YjgP_YjgQ [H]
EC number: NA
Molecular weight: Translated: 38026; Mature: 37895
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSRLSRYLSWLFLQRLLVTVFALVALLGVLDALSNADKLPAGAGFEGQMRYMWLRLPAL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH FDRIVVFAFLLAALLTYASLIRRNELVAISAAGISVFGQMRTLIPVVFLTAVAAAFIIDT HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHC VGPPASRSLLAWLGPEALQEDAQVPEELWLSDGKFLIELKSMQAEELTGITIFERNAEGA CCCCCCHHHHHHCCHHHHHHHHCCCHHHHHCCCCEEEEEHHCCHHHHCCEEEEEECCCCE VVAITTAETARPADGGWALSGTGQRRFDGEPPTDMTFWTSPQTPESLQLLLSPPRDLAIS EEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCHHHHHH NLIALSEMRGSGSRPSGAYELWALNRFLLPLTAVGFLLLAVPVMQVYGRRSNADIAVAAG HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHH VAVGFFYMVVDGILKTLAENGSISPILAVALPILALFLGSMWLALEREIRK HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TSRLSRYLSWLFLQRLLVTVFALVALLGVLDALSNADKLPAGAGFEGQMRYMWLRLPAL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH FDRIVVFAFLLAALLTYASLIRRNELVAISAAGISVFGQMRTLIPVVFLTAVAAAFIIDT HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHC VGPPASRSLLAWLGPEALQEDAQVPEELWLSDGKFLIELKSMQAEELTGITIFERNAEGA CCCCCCHHHHHHCCHHHHHHHHCCCHHHHHCCCCEEEEEHHCCHHHHCCEEEEEECCCCE VVAITTAETARPADGGWALSGTGQRRFDGEPPTDMTFWTSPQTPESLQLLLSPPRDLAIS EEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCHHHHHH NLIALSEMRGSGSRPSGAYELWALNRFLLPLTAVGFLLLAVPVMQVYGRRSNADIAVAAG HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHH VAVGFFYMVVDGILKTLAENGSISPILAVALPILALFLGSMWLALEREIRK HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]