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The map label for this gene is fecI [C]

Identifier: 114797997

GI number: 114797997

Start: 797474

End: 798142

Strand: Direct

Name: fecI [C]

Synonym: HNE_0785

Alternate gene names: 114797997

Gene position: 797474-798142 (Clockwise)

Preceding gene: 114799993

Following gene: 114798947

Centisome position: 21.52

GC content: 61.73

Gene sequence:

>669_bases
GTGATTGAACAAAGGTCCGACGTGCCTCCAAAGTCAGCGAATTTGCAAAGCAAAGCTGCCGGAGACTATGCTGAAAAGAC
TCTAGAAGCAGGAACTTCGTCCGCCGTTTCCCCGCTCACCTATATCTTCCGCACACAGTATCGCCAGCTTCTGCGCTTCT
GCCGCATACGGGTGCGTAATGATGCAGATGCCGAAGATATCGTGCAGGGCGCATTCCTGGCGGCGCGGAGGGCGTACCCT
GACAAAGGGACAGACGAGCTGCGGCCGCTATTGTTCACGCTGGTGCGGAACACGGCGCTGAGCCACCTCCGGGCGCCCTG
GAGCAAACGGCACCAGGGAGAGGATATCGGCGCGATAGGCGAGCAGCTGGCATGTCCGGCCAGCCCGAACCCGGAAAAAC
AGCTCATGGACGCGGAGCGGCTAGCCATTGCTGAAGCCGTGGTGTCGGGCATGAGCGCGCGGCGGCAGGCCGCGTTGCGG
CTCCACCGGTATGAAGGTCTTTCCTATGAAGAGATTGCCCGGCGTCTGTCGATCTCCTCAACCGCCGTCAAAAAACATGT
GGCGCGGGCCGTTGCCGAAATTGCCGCGCGCCTGGCCGAAGCCGAAGATCCGGCCGCTCACCACGGAGACGTGACAGAGA
AGGGCACGCGGCCACGTCCGAAGCCGTAA

Upstream 100 bases:

>100_bases
GAAAATACAAGCACGGAGTATACTCTGCAAATCAAATTGAGGTGGCTGGCCGAAACTGTCAGGTCGAACCTGTCTCTGGA
ACGTTTGCGGAGTAGTGGCT

Downstream 100 bases:

>100_bases
ATCGGCCGAGGCCGCCTGCGCTCAACCGTTTTCAGGCAGGACACCGCGGATCGGTTACACGCCGACCGGGGAAGTGCGTC
CCGGGGGTGAAGAGTTGCCC

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-; RNA Polymerase Sigma-70 Family Protein; ECF Sigma Factor

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MIEQRSDVPPKSANLQSKAAGDYAEKTLEAGTSSAVSPLTYIFRTQYRQLLRFCRIRVRNDADAEDIVQGAFLAARRAYP
DKGTDELRPLLFTLVRNTALSHLRAPWSKRHQGEDIGAIGEQLACPASPNPEKQLMDAERLAIAEAVVSGMSARRQAALR
LHRYEGLSYEEIARRLSISSTAVKKHVARAVAEIAARLAEAEDPAAHHGDVTEKGTRPRPKP

Sequences:

>Translated_222_residues
MIEQRSDVPPKSANLQSKAAGDYAEKTLEAGTSSAVSPLTYIFRTQYRQLLRFCRIRVRNDADAEDIVQGAFLAARRAYP
DKGTDELRPLLFTLVRNTALSHLRAPWSKRHQGEDIGAIGEQLACPASPNPEKQLMDAERLAIAEAVVSGMSARRQAALR
LHRYEGLSYEEIARRLSISSTAVKKHVARAVAEIAARLAEAEDPAAHHGDVTEKGTRPRPKP
>Mature_222_residues
MIEQRSDVPPKSANLQSKAAGDYAEKTLEAGTSSAVSPLTYIFRTQYRQLLRFCRIRVRNDADAEDIVQGAFLAARRAYP
DKGTDELRPLLFTLVRNTALSHLRAPWSKRHQGEDIGAIGEQLACPASPNPEKQLMDAERLAIAEAVVSGMSARRQAALR
LHRYEGLSYEEIARRLSISSTAVKKHVARAVAEIAARLAEAEDPAAHHGDVTEKGTRPRPKP

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24476; Mature: 24476

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEQRSDVPPKSANLQSKAAGDYAEKTLEAGTSSAVSPLTYIFRTQYRQLLRFCRIRVRN
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
DADAEDIVQGAFLAARRAYPDKGTDELRPLLFTLVRNTALSHLRAPWSKRHQGEDIGAIG
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHH
EQLACPASPNPEKQLMDAERLAIAEAVVSGMSARRQAALRLHRYEGLSYEEIARRLSISS
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
TAVKKHVARAVAEIAARLAEAEDPAAHHGDVTEKGTRPRPKP
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIEQRSDVPPKSANLQSKAAGDYAEKTLEAGTSSAVSPLTYIFRTQYRQLLRFCRIRVRN
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
DADAEDIVQGAFLAARRAYPDKGTDELRPLLFTLVRNTALSHLRAPWSKRHQGEDIGAIG
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHH
EQLACPASPNPEKQLMDAERLAIAEAVVSGMSARRQAALRLHRYEGLSYEEIARRLSISS
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
TAVKKHVARAVAEIAARLAEAEDPAAHHGDVTEKGTRPRPKP
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA