Click here to switch to the map view.

The map label for this gene is nccH [H]

Identifier: 114797984

GI number: 114797984

Start: 1389720

End: 1390256

Strand: Reverse

Name: nccH [H]

Synonym: HNE_1358

Alternate gene names: 114797984

Gene position: 1390256-1389720 (Counterclockwise)

Preceding gene: 114797219

Following gene: 114797234

Centisome position: 37.52

GC content: 65.74

Gene sequence:

>537_bases
ATGCGATCAGACCCCGATCTCGCCCATGCGGCGGCCAAGGGCAGCGAAGACGCCTTCGCCGAACTTGTCCGCCGGCACCA
GGCACGGGTGCGCGGCATGGCCCGCCGCCTGACCGGATCAGCCGCGCAGGGAGACGACATTGCCCAGATGACGTTCCTCA
CCGCCTGGCAGAAAATTGCCACCTATGCGGGGGGCACCTTCAGCGCCTGGATCTGCACCATCTGCTGGCGGGAGTTTCTG
CAATGGCGCCGCCGCCAGAAGATCGAGATAGAGTTTGACGAGACCGCCGAGATCATTCCGTTCGACCGGCCGTTCGATCG
CTCGGCGACCGAAACCGAAACCCGGATGGACCTCGCCCGCGCCCTCGACACCCTGACCGAAGCCCAGAGGGTGTGTGTGG
TGCTCTGCGTTGCCGCCGGCCTCAGCCACCGCGAAGCAGCCCAGGCCACAGGCTGGCCGCTGGGCACTGTGAAATCCCAT
GTTCTGCGCGGCGTTGCCCAACTCAGGACGTGCCTTGCCAATGCCGACGTGGCATAA

Upstream 100 bases:

>100_bases
CCCATCTTCATCGGTATCGCGTACATTGGTCTGTGGGCGTTCGGCCGTGAAAAATCGGCCGCTGAGTAATCTCAGGCTGG
TGGCGTCCGGAGGACGGGAT

Downstream 100 bases:

>100_bases
AGGAGAGATGACGATGCGTGATGATGAAACCTATGGCGACCTCGCCCGCCTGTTTGCCGCCGAAGATGGCGCGCTGGAGG
CCGCCCCCTTCACCGCAGAC

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MRSDPDLAHAAAKGSEDAFAELVRRHQARVRGMARRLTGSAAQGDDIAQMTFLTAWQKIATYAGGTFSAWICTICWREFL
QWRRRQKIEIEFDETAEIIPFDRPFDRSATETETRMDLARALDTLTEAQRVCVVLCVAAGLSHREAAQATGWPLGTVKSH
VLRGVAQLRTCLANADVA

Sequences:

>Translated_178_residues
MRSDPDLAHAAAKGSEDAFAELVRRHQARVRGMARRLTGSAAQGDDIAQMTFLTAWQKIATYAGGTFSAWICTICWREFL
QWRRRQKIEIEFDETAEIIPFDRPFDRSATETETRMDLARALDTLTEAQRVCVVLCVAAGLSHREAAQATGWPLGTVKSH
VLRGVAQLRTCLANADVA
>Mature_178_residues
MRSDPDLAHAAAKGSEDAFAELVRRHQARVRGMARRLTGSAAQGDDIAQMTFLTAWQKIATYAGGTFSAWICTICWREFL
QWRRRQKIEIEFDETAEIIPFDRPFDRSATETETRMDLARALDTLTEAQRVCVVLCVAAGLSHREAAQATGWPLGTVKSH
VLRGVAQLRTCLANADVA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the genes for a membrane-located efflux system that confers resistance to nickel, cobalt and

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19793; Mature: 19793

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSDPDLAHAAAKGSEDAFAELVRRHQARVRGMARRLTGSAAQGDDIAQMTFLTAWQKIA
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
TYAGGTFSAWICTICWREFLQWRRRQKIEIEFDETAEIIPFDRPFDRSATETETRMDLAR
HHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
ALDTLTEAQRVCVVLCVAAGLSHREAAQATGWPLGTVKSHVLRGVAQLRTCLANADVA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRSDPDLAHAAAKGSEDAFAELVRRHQARVRGMARRLTGSAAQGDDIAQMTFLTAWQKIA
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
TYAGGTFSAWICTICWREFLQWRRRQKIEIEFDETAEIIPFDRPFDRSATETETRMDLAR
HHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
ALDTLTEAQRVCVVLCVAAGLSHREAAQATGWPLGTVKSHVLRGVAQLRTCLANADVA
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7961470 [H]