| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is dcp [H]
Identifier: 114797980
GI number: 114797980
Start: 3449649
End: 3451829
Strand: Direct
Name: dcp [H]
Synonym: HNE_3288
Alternate gene names: 114797980
Gene position: 3449649-3451829 (Clockwise)
Preceding gene: 114797225
Following gene: 114800010
Centisome position: 93.11
GC content: 61.94
Gene sequence:
>2181_bases ATGACTGATGCCCTGAAGGGCGGCGCTGCCGCTCTCGTACTCGCCGCCACGGCTGCCTGCGGCGCCCCGGAAACCACCAC ACCGGAAGCCGAAGCCGCCAGCAGCCAGAGCGAGCTGCCTGAAATCACCGTCACCGACGCCGAGCTGGAAGGAAACCCCT TCCGCGCCGAATGGACCGGCGCCTATGGCGCGCCCCCCTTCGCCCAGATCACCGACGCGCACTACATGCCGGCGGTCAAG AAGGGCATCCTCGAGATGCGCGCCGAGATCGACGCCATCGTCAACACCGAAGAAGAGCCCACCTTCGAGAACACCATCCT GGCGCTGGAAAAATCCGGCAAGGCGCTGGAGCGGGTCATGCTGGTGTTCGGCAACATCACCAACACCGATACCAATGACG CGCTCACGGCCCTGGAAGGCGAAATCTACCCCATGCTCACACGTGAGCAGGATGCGGTGACCTTCAATCCGGAACTCTTT GCCCGCGTGCAGGCCGTTTACGACCAACGCGACCGTCTCGGCCTCGACGAGCAGGAAGCCCGCCTGCTGGAGCTGACGCA TCGCAATTTCGTCCGCGCCGGCGCCAGCCTCGCGCCGGAAGTCCAGGCAGAGATCGGCCAGCTGAACGCCGAAATCTCCG CCCTGACGACCACCTATGGCCAGAACCTTCTCAACGCCACCAACGCCTTCAAGCTGGAAATCACCGATCCGGCCCGCCTC GGCGGCCTGTCGGATGACTTCAAGAACGCCATCAAGGTGGACGGCGAAGACAAATGGGTGGTCGGCATCAGCCGCTCCTT CTTCGAAGGCTTCATGGCCAGCGCCGAAGACCGCGAGCTGCGCAGCCAGCTGTTTGACGGCTATCGCACTGTCGCCTCCT CCGGCGAGTTCGATAACGGCCCGCTTGCCATCAAGCTCGCCCAGCTGCGCGCCAAACGCGCCGAGCTGATGGGCTATCCC AGCCACGCGCATTATGTGCTCGAGGAGCGCATGGCGCACACCCCCGATGCCGCGCTCGAATTCCTAGGCAAAGTGCTGGA GCCCGGCCTCGCCCGCGCCGCAGAAGAAGAAGCCGACATGGAGACGATCGCCGGACACGAGATCCTCGGCCATGACTGGT GGTTCTATTCGGAAAAGGTCCGTGCCGAGAAGTACGCCTTCGACGAAAACCAGCTGCGCCCCTATTTCGAACTGGGCGCG TCCACCGACGGCGCGTTTGAAGTTGCCTCGCGCCTCTTCAACATCACCCTGGAAGAAGTGCCCGTCGAGGCGTGGAACCC GGCTGTCAAATCCTATGACGTGAAGGATTCCGAAAGCGGCGAACATCTCGGCCTGCTGATGATCGACAATTTCGCCCGCG ACACCAAGCGCGGCGGCGCCTGGATGAGCACCTACCGCTCTTCTTCGGATATGGATGGCAACACCATCCGCCCGATCATC ACCAACAACATGAACCTGGTTCCGCCCGCAGCGGGCCAGCCGGCCCTGCTCTCGCCGACTGAAGTGGAAACTCTGTTCCA CGAATTCGGCCACGGCCTGCACGGCCTGCTCACTCAGATCCGCTATCCGAGCTTCTCGGGCGTCTATGGCGGCCCGGACT ATGTCGAGCTGCCCTCCCAGATCATGGAACACTGGGTGACCGAGCCTCAGGTGCTGGCGATGTATGCCCGCCACCATGAA ACCGGCGAGATCATTCCTCAGGAACTGGTCGACAAGATGAACAAGGCCTCGACCTTCAATCAGGGCTTCAAGACGACCGA GTACATCGCTGCCTCGCTGATCGACCTTCACTGGCACATGCTGTCTTCGGAAGAAGCCGCCGAGATCACCGATGCCCGCG AGTTTGAAAAATCCGTACTCGCCCAATACAACATCCCGGAAATCATCGAGCCACGGTATCGCTCGACCTATTTCTCCCAC ATCTTCGCGGGCGGCTACGCGGCCGGCTACTACTCATACCTCTGGGCAGAAATTCTGGATGCGGATGGCTTTGACGCCTT CAAACAATCCGGCGACATCTTCAATCCGGAAGTCGCTGCGAAGCTGAAACAATGGGTGTTCGAATCCGGCGGCCTGCGGG AGACCGATGAACTCTACCGCAATTTCCGCGGGTCTGATCCGGGCATCGAGCCGCTGCTGCGCAATCGCGGCTTTGCCGAG CCCTCCCCTGCCGAAGGCTGA
Upstream 100 bases:
>100_bases CGGGGGCAAAACCGCCCCCTTCTGCCCGTTTCTCTGGAAATCTGCGCCCCCCACAGGTAAACCCTCTGCAATCTTCATTG CCAGAGGAAGCATGATGAAA
Downstream 100 bases:
>100_bases TCCGTTCAGCTCCCAAACAAAAACCCCGCCTCCTGGAGGCGGGGTTTTTTTGTGGCGCAGGATGGTTTCAGGCCAGATCA GCCCCCGACGACCGGGTCCT
Product: peptidyl-dipeptidase
Products: NA
Alternate protein names: Dipeptidyl carboxypeptidase [H]
Number of amino acids: Translated: 726; Mature: 725
Protein sequence:
>726_residues MTDALKGGAAALVLAATAACGAPETTTPEAEAASSQSELPEITVTDAELEGNPFRAEWTGAYGAPPFAQITDAHYMPAVK KGILEMRAEIDAIVNTEEEPTFENTILALEKSGKALERVMLVFGNITNTDTNDALTALEGEIYPMLTREQDAVTFNPELF ARVQAVYDQRDRLGLDEQEARLLELTHRNFVRAGASLAPEVQAEIGQLNAEISALTTTYGQNLLNATNAFKLEITDPARL GGLSDDFKNAIKVDGEDKWVVGISRSFFEGFMASAEDRELRSQLFDGYRTVASSGEFDNGPLAIKLAQLRAKRAELMGYP SHAHYVLEERMAHTPDAALEFLGKVLEPGLARAAEEEADMETIAGHEILGHDWWFYSEKVRAEKYAFDENQLRPYFELGA STDGAFEVASRLFNITLEEVPVEAWNPAVKSYDVKDSESGEHLGLLMIDNFARDTKRGGAWMSTYRSSSDMDGNTIRPII TNNMNLVPPAAGQPALLSPTEVETLFHEFGHGLHGLLTQIRYPSFSGVYGGPDYVELPSQIMEHWVTEPQVLAMYARHHE TGEIIPQELVDKMNKASTFNQGFKTTEYIAASLIDLHWHMLSSEEAAEITDAREFEKSVLAQYNIPEIIEPRYRSTYFSH IFAGGYAAGYYSYLWAEILDADGFDAFKQSGDIFNPEVAAKLKQWVFESGGLRETDELYRNFRGSDPGIEPLLRNRGFAE PSPAEG
Sequences:
>Translated_726_residues MTDALKGGAAALVLAATAACGAPETTTPEAEAASSQSELPEITVTDAELEGNPFRAEWTGAYGAPPFAQITDAHYMPAVK KGILEMRAEIDAIVNTEEEPTFENTILALEKSGKALERVMLVFGNITNTDTNDALTALEGEIYPMLTREQDAVTFNPELF ARVQAVYDQRDRLGLDEQEARLLELTHRNFVRAGASLAPEVQAEIGQLNAEISALTTTYGQNLLNATNAFKLEITDPARL GGLSDDFKNAIKVDGEDKWVVGISRSFFEGFMASAEDRELRSQLFDGYRTVASSGEFDNGPLAIKLAQLRAKRAELMGYP SHAHYVLEERMAHTPDAALEFLGKVLEPGLARAAEEEADMETIAGHEILGHDWWFYSEKVRAEKYAFDENQLRPYFELGA STDGAFEVASRLFNITLEEVPVEAWNPAVKSYDVKDSESGEHLGLLMIDNFARDTKRGGAWMSTYRSSSDMDGNTIRPII TNNMNLVPPAAGQPALLSPTEVETLFHEFGHGLHGLLTQIRYPSFSGVYGGPDYVELPSQIMEHWVTEPQVLAMYARHHE TGEIIPQELVDKMNKASTFNQGFKTTEYIAASLIDLHWHMLSSEEAAEITDAREFEKSVLAQYNIPEIIEPRYRSTYFSH IFAGGYAAGYYSYLWAEILDADGFDAFKQSGDIFNPEVAAKLKQWVFESGGLRETDELYRNFRGSDPGIEPLLRNRGFAE PSPAEG >Mature_725_residues TDALKGGAAALVLAATAACGAPETTTPEAEAASSQSELPEITVTDAELEGNPFRAEWTGAYGAPPFAQITDAHYMPAVKK GILEMRAEIDAIVNTEEEPTFENTILALEKSGKALERVMLVFGNITNTDTNDALTALEGEIYPMLTREQDAVTFNPELFA RVQAVYDQRDRLGLDEQEARLLELTHRNFVRAGASLAPEVQAEIGQLNAEISALTTTYGQNLLNATNAFKLEITDPARLG GLSDDFKNAIKVDGEDKWVVGISRSFFEGFMASAEDRELRSQLFDGYRTVASSGEFDNGPLAIKLAQLRAKRAELMGYPS HAHYVLEERMAHTPDAALEFLGKVLEPGLARAAEEEADMETIAGHEILGHDWWFYSEKVRAEKYAFDENQLRPYFELGAS TDGAFEVASRLFNITLEEVPVEAWNPAVKSYDVKDSESGEHLGLLMIDNFARDTKRGGAWMSTYRSSSDMDGNTIRPIIT NNMNLVPPAAGQPALLSPTEVETLFHEFGHGLHGLLTQIRYPSFSGVYGGPDYVELPSQIMEHWVTEPQVLAMYARHHET GEIIPQELVDKMNKASTFNQGFKTTEYIAASLIDLHWHMLSSEEAAEITDAREFEKSVLAQYNIPEIIEPRYRSTYFSHI FAGGYAAGYYSYLWAEILDADGFDAFKQSGDIFNPEVAAKLKQWVFESGGLRETDELYRNFRGSDPGIEPLLRNRGFAEP SPAEG
Specific function: Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides [H]
COG id: COG0339
COG function: function code E; Zn-dependent oligopeptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3 family [H]
Homologues:
Organism=Homo sapiens, GI4507491, Length=589, Percent_Identity=27.8438030560272, Blast_Score=231, Evalue=2e-60, Organism=Homo sapiens, GI14149738, Length=640, Percent_Identity=28.59375, Blast_Score=223, Evalue=6e-58, Organism=Homo sapiens, GI156105687, Length=657, Percent_Identity=24.3531202435312, Blast_Score=148, Evalue=1e-35, Organism=Escherichia coli, GI1787819, Length=680, Percent_Identity=40.4411764705882, Blast_Score=468, Evalue=1e-133, Organism=Escherichia coli, GI1789913, Length=671, Percent_Identity=31.892697466468, Blast_Score=329, Evalue=5e-91, Organism=Caenorhabditis elegans, GI71999758, Length=643, Percent_Identity=23.0171073094868, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI32565901, Length=514, Percent_Identity=23.9299610894942, Blast_Score=89, Evalue=8e-18, Organism=Saccharomyces cerevisiae, GI6319793, Length=442, Percent_Identity=26.9230769230769, Blast_Score=164, Evalue=3e-41, Organism=Saccharomyces cerevisiae, GI6322715, Length=672, Percent_Identity=23.6607142857143, Blast_Score=124, Evalue=4e-29, Organism=Drosophila melanogaster, GI21356111, Length=482, Percent_Identity=26.3485477178423, Blast_Score=159, Evalue=8e-39, Organism=Drosophila melanogaster, GI20129717, Length=557, Percent_Identity=24.0574506283662, Blast_Score=146, Evalue=5e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 [H]
Pfam domain/function: PF01432 Peptidase_M3 [H]
EC number: =3.4.15.5 [H]
Molecular weight: Translated: 80389; Mature: 80258
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDALKGGAAALVLAATAACGAPETTTPEAEAASSQSELPEITVTDAELEGNPFRAEWTG CCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCCHHCCCEEEEECCCCCCCCCEEEECC AYGAPPFAQITDAHYMPAVKKGILEMRAEIDAIVNTEEEPTFENTILALEKSGKALERVM CCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEEHHCCHHHHHHH LVFGNITNTDTNDALTALEGEIYPMLTREQDAVTFNPELFARVQAVYDQRDRLGLDEQEA HHHCCCCCCCCCHHHHHHCCCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHCCCCHHHH RLLELTHRNFVRAGASLAPEVQAEIGQLNAEISALTTTYGQNLLNATNAFKLEITDPARL HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH GGLSDDFKNAIKVDGEDKWVVGISRSFFEGFMASAEDRELRSQLFDGYRTVASSGEFDNG CCCCHHHHHHEEECCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC PLAIKLAQLRAKRAELMGYPSHAHYVLEERMAHTPDAALEFLGKVLEPGLARAAEEEADM CEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHH ETIAGHEILGHDWWFYSEKVRAEKYAFDENQLRPYFELGASTDGAFEVASRLFNITLEEV HHHCCCHHHCCCCEEHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHC PVEAWNPAVKSYDVKDSESGEHLGLLMIDNFARDTKRGGAWMSTYRSSSDMDGNTIRPII CCHHCCCCHHCCCCCCCCCCCEEEEEEECCHHHHHHCCCHHHHHHCCCCCCCCCCCCCEE TNNMNLVPPAAGQPALLSPTEVETLFHEFGHGLHGLLTQIRYPSFSGVYGGPDYVELPSQ ECCCEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHH IMEHWVTEPQVLAMYARHHETGEIIPQELVDKMNKASTFNQGFKTTEYIAASLIDLHWHM HHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH LSSEEAAEITDAREFEKSVLAQYNIPEIIEPRYRSTYFSHIFAGGYAAGYYSYLWAEILD HCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHC ADGFDAFKQSGDIFNPEVAAKLKQWVFESGGLRETDELYRNFRGSDPGIEPLLRNRGFAE CCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHCCCCCC PSPAEG CCCCCC >Mature Secondary Structure TDALKGGAAALVLAATAACGAPETTTPEAEAASSQSELPEITVTDAELEGNPFRAEWTG CCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCCHHCCCEEEEECCCCCCCCCEEEECC AYGAPPFAQITDAHYMPAVKKGILEMRAEIDAIVNTEEEPTFENTILALEKSGKALERVM CCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEEHHCCHHHHHHH LVFGNITNTDTNDALTALEGEIYPMLTREQDAVTFNPELFARVQAVYDQRDRLGLDEQEA HHHCCCCCCCCCHHHHHHCCCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHCCCCHHHH RLLELTHRNFVRAGASLAPEVQAEIGQLNAEISALTTTYGQNLLNATNAFKLEITDPARL HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH GGLSDDFKNAIKVDGEDKWVVGISRSFFEGFMASAEDRELRSQLFDGYRTVASSGEFDNG CCCCHHHHHHEEECCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC PLAIKLAQLRAKRAELMGYPSHAHYVLEERMAHTPDAALEFLGKVLEPGLARAAEEEADM CEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHH ETIAGHEILGHDWWFYSEKVRAEKYAFDENQLRPYFELGASTDGAFEVASRLFNITLEEV HHHCCCHHHCCCCEEHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHC PVEAWNPAVKSYDVKDSESGEHLGLLMIDNFARDTKRGGAWMSTYRSSSDMDGNTIRPII CCHHCCCCHHCCCCCCCCCCCEEEEEEECCHHHHHHCCCHHHHHHCCCCCCCCCCCCCEE TNNMNLVPPAAGQPALLSPTEVETLFHEFGHGLHGLLTQIRYPSFSGVYGGPDYVELPSQ ECCCEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHH IMEHWVTEPQVLAMYARHHETGEIIPQELVDKMNKASTFNQGFKTTEYIAASLIDLHWHM HHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH LSSEEAAEITDAREFEKSVLAQYNIPEIIEPRYRSTYFSHIFAGGYAAGYYSYLWAEILD HCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHC ADGFDAFKQSGDIFNPEVAAKLKQWVFESGGLRETDELYRNFRGSDPGIEPLLRNRGFAE CCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHCCCCCC PSPAEG CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226676; 9097039; 9278503 [H]