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The map label for this gene is xerD [H]

Identifier: 114797932

GI number: 114797932

Start: 64291

End: 65220

Strand: Reverse

Name: xerD [H]

Synonym: HNE_0080

Alternate gene names: 114797932

Gene position: 65220-64291 (Counterclockwise)

Preceding gene: 114799844

Following gene: 114798208

Centisome position: 1.76

GC content: 64.41

Gene sequence:

>930_bases
ATGGATGACCGCTCGCGCATCGGCGCTTTTCTCGAAATGATGTCGGCGGAGCGGGGCGCAAGCCCCAATACGCTCGATGC
GTATGGCCGCGATCTGCTGGACGCCTCCGAATTCTGCCATCTGCGGCTGGTAACAGCCTCCTCGAGCGACCTTTCGGCCT
GGCTGGCCGACCTTGCCGCACGCGGCATGGCGCCCTCAACCCAGGCCCGGAAACTCTCCGCCGTGCGGCGTTTCTTCCGA
TTCCTGTTTCAGGAAGGCGACCGCAAGGATGACCCCACCGCCCGGTTGGACGGCCCTTCCCCGGAGCGGGAAGTGCCCGA
TGTGCTGTCGCGCGAGGAGGTGGGCCGCCTGATCGAGGCCTGCGGCAATGACAAACGCCTGAAATGCCTGGTCGAGCTGC
TCTACGGCGCAGGGCTTCGCGCCACAGAACTCGTAACCTTGCGGGTCGGCAATCTGCCCCGCCGCAAGGCCGGGCAGTGG
ATGAGCGCAGATATCATCATCCGCGGAAAAGGCGGCAAGGACCGCCTGTGCCCGCTCGGGCGCGCGGCGCTGATTGCCTT
GAGCGAATGGCTTGAAGTGCGCGAAGCAAGCCTGCCGGATAATCCGCTGATGCGCAGCAAACAGGAGGGATTTGTATTCC
CTTCTCGCGGCAAGGAAGGCCACCTCACGCGTCGGCGGCTTGGCCAGATGCTGGAAGATCTCGCCGGTGAGGCGGGTTTG
CGCTCTGAGCGGGTCTACCCGCACGCTTTGCGCCATGCCTATGCCACGCATCTGCTACAGGGTGGGGCGGACCTCAGGGT
TGTGCAGACCCTTCTTGGCCACGCCGATATTGCCACAACGCAGATTTACACCCACGTCCTGACCGATGAACTGGCCGAGC
TTCTGGAAACGGCCCACCCAATGGCGACCGCCTCCAAAGGCCGGCGCTGA

Upstream 100 bases:

>100_bases
AAGAACGCGCCGCCAGAAGGCGAAATCCGCATACCCGTCGAGGGCGCCCTCGAATAGGGCAGAAACGCCCCCTTAACCGC
GTTTCCTTAGCGTCGCGCGT

Downstream 100 bases:

>100_bases
CGCGTTAAGCGACCGCCGAGCCGCGTGTATTGACCCAGAAAGCGTGGATCACGCCGGGCAACCAGCCGATCAGCGTCAGA
ATGACGTTCAGCAGGAATTG

Product: tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MDDRSRIGAFLEMMSAERGASPNTLDAYGRDLLDASEFCHLRLVTASSSDLSAWLADLAARGMAPSTQARKLSAVRRFFR
FLFQEGDRKDDPTARLDGPSPEREVPDVLSREEVGRLIEACGNDKRLKCLVELLYGAGLRATELVTLRVGNLPRRKAGQW
MSADIIIRGKGGKDRLCPLGRAALIALSEWLEVREASLPDNPLMRSKQEGFVFPSRGKEGHLTRRRLGQMLEDLAGEAGL
RSERVYPHALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVLTDELAELLETAHPMATASKGRR

Sequences:

>Translated_309_residues
MDDRSRIGAFLEMMSAERGASPNTLDAYGRDLLDASEFCHLRLVTASSSDLSAWLADLAARGMAPSTQARKLSAVRRFFR
FLFQEGDRKDDPTARLDGPSPEREVPDVLSREEVGRLIEACGNDKRLKCLVELLYGAGLRATELVTLRVGNLPRRKAGQW
MSADIIIRGKGGKDRLCPLGRAALIALSEWLEVREASLPDNPLMRSKQEGFVFPSRGKEGHLTRRRLGQMLEDLAGEAGL
RSERVYPHALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVLTDELAELLETAHPMATASKGRR
>Mature_309_residues
MDDRSRIGAFLEMMSAERGASPNTLDAYGRDLLDASEFCHLRLVTASSSDLSAWLADLAARGMAPSTQARKLSAVRRFFR
FLFQEGDRKDDPTARLDGPSPEREVPDVLSREEVGRLIEACGNDKRLKCLVELLYGAGLRATELVTLRVGNLPRRKAGQW
MSADIIIRGKGGKDRLCPLGRAALIALSEWLEVREASLPDNPLMRSKQEGFVFPSRGKEGHLTRRRLGQMLEDLAGEAGL
RSERVYPHALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVLTDELAELLETAHPMATASKGRR

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=308, Percent_Identity=41.8831168831169, Blast_Score=207, Evalue=6e-55,
Organism=Escherichia coli, GI1790244, Length=311, Percent_Identity=33.1189710610932, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI1790767, Length=181, Percent_Identity=30.939226519337, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34179; Mature: 34179

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDRSRIGAFLEMMSAERGASPNTLDAYGRDLLDASEFCHLRLVTASSSDLSAWLADLAA
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHH
RGMAPSTQARKLSAVRRFFRFLFQEGDRKDDPTARLDGPSPEREVPDVLSREEVGRLIEA
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
CGNDKRLKCLVELLYGAGLRATELVTLRVGNLPRRKAGQWMSADIIIRGKGGKDRLCPLG
HCCCHHHHHHHHHHHCCCCCHHEEEEEEECCCCCHHHCCCCEEEEEEECCCCCCCCCCCH
RAALIALSEWLEVREASLPDNPLMRSKQEGFVFPSRGKEGHLTRRRLGQMLEDLAGEAGL
HHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
RSERVYPHALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVLTDELAELLETAHP
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
MATASKGRR
HHHHCCCCC
>Mature Secondary Structure
MDDRSRIGAFLEMMSAERGASPNTLDAYGRDLLDASEFCHLRLVTASSSDLSAWLADLAA
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHH
RGMAPSTQARKLSAVRRFFRFLFQEGDRKDDPTARLDGPSPEREVPDVLSREEVGRLIEA
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
CGNDKRLKCLVELLYGAGLRATELVTLRVGNLPRRKAGQWMSADIIIRGKGGKDRLCPLG
HCCCHHHHHHHHHHHCCCCCHHEEEEEEECCCCCHHHCCCCEEEEEEECCCCCCCCCCCH
RAALIALSEWLEVREASLPDNPLMRSKQEGFVFPSRGKEGHLTRRRLGQMLEDLAGEAGL
HHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
RSERVYPHALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVLTDELAELLETAHP
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
MATASKGRR
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]