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The map label for this gene is yciR [C]

Identifier: 114797866

GI number: 114797866

Start: 2051247

End: 2053118

Strand: Reverse

Name: yciR [C]

Synonym: HNE_1979

Alternate gene names: 114797866

Gene position: 2053118-2051247 (Counterclockwise)

Preceding gene: 114797139

Following gene: 114800148

Centisome position: 55.41

GC content: 59.94

Gene sequence:

>1872_bases
ATGCTTAAAACTATTCTCGGTGCGGAATGGACTATCGAGCAGGAGTTGGCCACCACGCTGGACCTGGTGCGCAGGCTGGC
CGCTGACAGCGCAAGCCGTTTGGTTACATGCCTAATCATCACTGCAGTCGTCGCTTATACAGCGTCGGCTCAGCTCGCAA
TTATTTGGGGGCTGCTTGTAGTATTAAACGAGTACGGAGAATTTCGGCTTGCCCGGCGTGTGCGCAGAACGGATCTTTCG
GTCCACAGCCGCTTGGTGACTTACTTCGTTCACTTGTGGATCGGCGCCTGCCTCTGGACTTCCATCTGTCTCCTTCTGTG
GATACCGGGAGACATAATCGACAAGCTGACAGGGGGCGCCATTCTGCTCGGCATACTGATCAACGGGTCGCTCTCCTACA
ATGAGAGCCGGCTGCAAGCCATCGCAACTTGTCTTCCGGCAATCATCGGTGCAGCCATCATGATCGGCTGGGCTATTTTC
GATCCCCATCTGGGGGAAAGAGAGAAGGTTGTCGGCTGTGCAGCCCTTTTCACGCTTGTTGCTTACCTTGTCACAGGCGC
ACACAAGAGCGTTAAAACGCGCGAAATCCTGCGTACGCTTGTAACGAAAACGACGCGTCTCGCTGCGGAAGACCCCCTCA
CGGGGCTGCGTAACCGGCGGTCTTTCCTTGATGTGGTCGAGGCCCACGCCGGGACGGGCGCCGACTACTTCATCGCTTTC
GTAGATCTGGACCGCTTCAAGCCTTTGAATGATGAGTTTGGCCATGCCCTCGGTGATGAAGTCCTGAGGACGGTCGCCAA
TCGTCTTGAAGATCACCCGTTCGTGCTGGCCGCAGCGCGCCTCGGGGGGGACGAATTTGCGGTGCTGTGTGCGGTCCCCG
GAGAGCCAGGGGAGGCCGCCCGGCAGATGTCCATCCTGCATAGCGGCCTCTCGGCGCCCATCCGGTCCGAGGCAGGATCT
GTCTCCGTCGGTGCATCAATTGGTTGGGGCCGGGCGGGCATTGCGGGCACGCAGGTGTCAGATGTTCTGCACTCGGCTGA
TGTCGCGATGCGCCGCGCCAAGGTGGAGCACCTCGGCGTGGTCGAGTTCGACCCCGTTGCCGATTCTGCCGCGCTGACAT
CTTCCGCCATTGAGATCGCTTTTCGCCATGCGCTGGCAACCGGCCGCATTCGCGGAGCGCTGCAGCCAATCGTATCGGTA
AATGACGGCCGGATCGTTGCGATGGAGCTACTGGCGCGCTGGCCCAAGAGTGGTTTCCCGCGAGATCCCGCGCCGCAGGA
CTTCATTCCGATTGCCGAACGCCTCGGCCTGCTGAATGACATTCTGTGGGCAACCCTGCGCCAGGCGCTCCCCTCGCTTA
CCGGGACGAGCTGGTTGCTCGCCATCAATGTCTCACCGTCCCAGCTCATCTCCAGCCAGTTCCTGCCAAAGCTCAGTGCC
ATCATAGCGCAGCATGGTATCCCGCCAGAGCGAATCGAACTTGAGATCACAGAACAGGTCGCCTTCCGCAATGTCGACCA
GAACTGCGCCGTGCTTGACGAGGCCCGGGCGCTCGGCTTCCGGGTCGTGCTGGACGATTTCGGCGCCGGCTATTCGTCTC
TTGCCATGCTCGACAGGCTGCCGCTCGACAAGATCAAGCTTGATCGTGCCTTCGTCGGTGAACTCAGGGAGCGCACGGAA
ATCCAGAAAATCCTGAAAGCGACGGTGTCGCTGGCGCATGAGCTGGGCATGACGTGTTCGGTTGAGGGAATCGAATGCGC
CGAGACGGCGGCCATGGTCGCCGCTTTTGGGTGCGATCAGATGCAAGGCTACTGGATCGGGATGCCGGAGCTTATCGAGC
AAGCCCCTGTTTTGCTTGAGCTTGCGAGCTGA

Upstream 100 bases:

>100_bases
AAGAAACGGCTAAAGTCACACCGCAAACAGACCGAAGGGGTTAGCTAGCGGAACACGATGTTCTGCTAGACCTCTTCGGT
AGGTCGGCAGGTTGAGTCGT

Downstream 100 bases:

>100_bases
ACGCAGGCTTGGCGCCGCTCTGCCGACCCACCTGTTCGTGCCCGTCAGTAAGGGTTTGGTTACCACGAGCCAGTAGGCCT
ATGCATATGGTTTCACGGCT

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 623; Mature: 623

Protein sequence:

>623_residues
MLKTILGAEWTIEQELATTLDLVRRLAADSASRLVTCLIITAVVAYTASAQLAIIWGLLVVLNEYGEFRLARRVRRTDLS
VHSRLVTYFVHLWIGACLWTSICLLLWIPGDIIDKLTGGAILLGILINGSLSYNESRLQAIATCLPAIIGAAIMIGWAIF
DPHLGEREKVVGCAALFTLVAYLVTGAHKSVKTREILRTLVTKTTRLAAEDPLTGLRNRRSFLDVVEAHAGTGADYFIAF
VDLDRFKPLNDEFGHALGDEVLRTVANRLEDHPFVLAAARLGGDEFAVLCAVPGEPGEAARQMSILHSGLSAPIRSEAGS
VSVGASIGWGRAGIAGTQVSDVLHSADVAMRRAKVEHLGVVEFDPVADSAALTSSAIEIAFRHALATGRIRGALQPIVSV
NDGRIVAMELLARWPKSGFPRDPAPQDFIPIAERLGLLNDILWATLRQALPSLTGTSWLLAINVSPSQLISSQFLPKLSA
IIAQHGIPPERIELEITEQVAFRNVDQNCAVLDEARALGFRVVLDDFGAGYSSLAMLDRLPLDKIKLDRAFVGELRERTE
IQKILKATVSLAHELGMTCSVEGIECAETAAMVAAFGCDQMQGYWIGMPELIEQAPVLLELAS

Sequences:

>Translated_623_residues
MLKTILGAEWTIEQELATTLDLVRRLAADSASRLVTCLIITAVVAYTASAQLAIIWGLLVVLNEYGEFRLARRVRRTDLS
VHSRLVTYFVHLWIGACLWTSICLLLWIPGDIIDKLTGGAILLGILINGSLSYNESRLQAIATCLPAIIGAAIMIGWAIF
DPHLGEREKVVGCAALFTLVAYLVTGAHKSVKTREILRTLVTKTTRLAAEDPLTGLRNRRSFLDVVEAHAGTGADYFIAF
VDLDRFKPLNDEFGHALGDEVLRTVANRLEDHPFVLAAARLGGDEFAVLCAVPGEPGEAARQMSILHSGLSAPIRSEAGS
VSVGASIGWGRAGIAGTQVSDVLHSADVAMRRAKVEHLGVVEFDPVADSAALTSSAIEIAFRHALATGRIRGALQPIVSV
NDGRIVAMELLARWPKSGFPRDPAPQDFIPIAERLGLLNDILWATLRQALPSLTGTSWLLAINVSPSQLISSQFLPKLSA
IIAQHGIPPERIELEITEQVAFRNVDQNCAVLDEARALGFRVVLDDFGAGYSSLAMLDRLPLDKIKLDRAFVGELRERTE
IQKILKATVSLAHELGMTCSVEGIECAETAAMVAAFGCDQMQGYWIGMPELIEQAPVLLELAS
>Mature_623_residues
MLKTILGAEWTIEQELATTLDLVRRLAADSASRLVTCLIITAVVAYTASAQLAIIWGLLVVLNEYGEFRLARRVRRTDLS
VHSRLVTYFVHLWIGACLWTSICLLLWIPGDIIDKLTGGAILLGILINGSLSYNESRLQAIATCLPAIIGAAIMIGWAIF
DPHLGEREKVVGCAALFTLVAYLVTGAHKSVKTREILRTLVTKTTRLAAEDPLTGLRNRRSFLDVVEAHAGTGADYFIAF
VDLDRFKPLNDEFGHALGDEVLRTVANRLEDHPFVLAAARLGGDEFAVLCAVPGEPGEAARQMSILHSGLSAPIRSEAGS
VSVGASIGWGRAGIAGTQVSDVLHSADVAMRRAKVEHLGVVEFDPVADSAALTSSAIEIAFRHALATGRIRGALQPIVSV
NDGRIVAMELLARWPKSGFPRDPAPQDFIPIAERLGLLNDILWATLRQALPSLTGTSWLLAINVSPSQLISSQFLPKLSA
IIAQHGIPPERIELEITEQVAFRNVDQNCAVLDEARALGFRVVLDDFGAGYSSLAMLDRLPLDKIKLDRAFVGELRERTE
IQKILKATVSLAHELGMTCSVEGIECAETAAMVAAFGCDQMQGYWIGMPELIEQAPVLLELAS

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=418, Percent_Identity=32.2966507177034, Blast_Score=169, Evalue=5e-43,
Organism=Escherichia coli, GI87081921, Length=416, Percent_Identity=25.4807692307692, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1790496, Length=235, Percent_Identity=30.6382978723404, Blast_Score=115, Evalue=8e-27,
Organism=Escherichia coli, GI1787055, Length=238, Percent_Identity=31.0924369747899, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87081845, Length=248, Percent_Identity=31.8548387096774, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87082096, Length=499, Percent_Identity=23.6472945891784, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87081743, Length=218, Percent_Identity=31.1926605504587, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1788502, Length=226, Percent_Identity=30.5309734513274, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI1788849, Length=197, Percent_Identity=30.4568527918782, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1786507, Length=235, Percent_Identity=27.6595744680851, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081980, Length=229, Percent_Identity=27.5109170305677, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI226510982, Length=435, Percent_Identity=23.6781609195402, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081881, Length=162, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=35.8974358974359, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786584, Length=191, Percent_Identity=30.3664921465969, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1788381, Length=175, Percent_Identity=33.7142857142857, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1788956, Length=154, Percent_Identity=34.4155844155844, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 67407; Mature: 67407

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKTILGAEWTIEQELATTLDLVRRLAADSASRLVTCLIITAVVAYTASAQLAIIWGLLV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VLNEYGEFRLARRVRRTDLSVHSRLVTYFVHLWIGACLWTSICLLLWIPGDIIDKLTGGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC
ILLGILINGSLSYNESRLQAIATCLPAIIGAAIMIGWAIFDPHLGEREKVVGCAALFTLV
EEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
AYLVTGAHKSVKTREILRTLVTKTTRLAAEDPLTGLRNRRSFLDVVEAHAGTGADYFIAF
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
VDLDRFKPLNDEFGHALGDEVLRTVANRLEDHPFVLAAARLGGDEFAVLCAVPGEPGEAA
EEHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCHHHH
RQMSILHSGLSAPIRSEAGSVSVGASIGWGRAGIAGTQVSDVLHSADVAMRRAKVEHLGV
HHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
VEFDPVADSAALTSSAIEIAFRHALATGRIRGALQPIVSVNDGRIVAMELLARWPKSGFP
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHCCCCCCC
RDPAPQDFIPIAERLGLLNDILWATLRQALPSLTGTSWLLAINVSPSQLISSQFLPKLSA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHH
IIAQHGIPPERIELEITEQVAFRNVDQNCAVLDEARALGFRVVLDDFGAGYSSLAMLDRL
HHHHCCCCHHHEEEEEHHHHHHHCCCCCHHHHHHHHHHHHEEEEHHHCCCHHHHHHHHCC
PLDKIKLDRAFVGELRERTEIQKILKATVSLAHELGMTCSVEGIECAETAAMVAAFGCDQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHCCCC
MQGYWIGMPELIEQAPVLLELAS
CCCEECCCHHHHHCCCCCEEECC
>Mature Secondary Structure
MLKTILGAEWTIEQELATTLDLVRRLAADSASRLVTCLIITAVVAYTASAQLAIIWGLLV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VLNEYGEFRLARRVRRTDLSVHSRLVTYFVHLWIGACLWTSICLLLWIPGDIIDKLTGGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC
ILLGILINGSLSYNESRLQAIATCLPAIIGAAIMIGWAIFDPHLGEREKVVGCAALFTLV
EEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
AYLVTGAHKSVKTREILRTLVTKTTRLAAEDPLTGLRNRRSFLDVVEAHAGTGADYFIAF
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
VDLDRFKPLNDEFGHALGDEVLRTVANRLEDHPFVLAAARLGGDEFAVLCAVPGEPGEAA
EEHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCHHHH
RQMSILHSGLSAPIRSEAGSVSVGASIGWGRAGIAGTQVSDVLHSADVAMRRAKVEHLGV
HHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
VEFDPVADSAALTSSAIEIAFRHALATGRIRGALQPIVSVNDGRIVAMELLARWPKSGFP
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHCCCCCCC
RDPAPQDFIPIAERLGLLNDILWATLRQALPSLTGTSWLLAINVSPSQLISSQFLPKLSA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHH
IIAQHGIPPERIELEITEQVAFRNVDQNCAVLDEARALGFRVVLDDFGAGYSSLAMLDRL
HHHHCCCCHHHEEEEEHHHHHHHCCCCCHHHHHHHHHHHHEEEEHHHCCCHHHHHHHHCC
PLDKIKLDRAFVGELRERTEIQKILKATVSLAHELGMTCSVEGIECAETAAMVAAFGCDQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHCCCC
MQGYWIGMPELIEQAPVLLELAS
CCCEECCCHHHHHCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]