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The map label for this gene is rlpA [H]

Identifier: 114797813

GI number: 114797813

Start: 1861505

End: 1862737

Strand: Reverse

Name: rlpA [H]

Synonym: HNE_1815

Alternate gene names: 114797813

Gene position: 1862737-1861505 (Counterclockwise)

Preceding gene: 114800390

Following gene: 114799690

Centisome position: 50.28

GC content: 63.99

Gene sequence:

>1233_bases
ATGCCGTTCAAACGTTCGACTTTTGTTGGCCGGTCCAGGGTTGCCCTTTCGGTTCTCGCTTTTGCCTGCGCGCTCTCCGC
GACGGCTGAAGCGGGATCGCGTGGGGCACCTATCGTCTACAAATCGGACGCGATGAATGGGGCTGCGCCTTCCTTCCAGA
CCGCGCAGGCACCTGCGCGGGCTTCGGCGCCCGCCAAATCCGCGCCGATCGACAAGGCAACTGCCCGCATTGAATTCCGT
TATCCTGACTCACAGCCTGCTGTGGGCCAGCCGGTTGCCGGCGAGTTCAAGACGGCATCGGCCCAATCGGGTCCGATCGC
GGCATCCACGCGTGAAAGTGCTTATTCAGAAGCCCCTCAGATGATTGCGCCGGCACCGCCGGTTGTTGAGGCGGTTTCGC
TTCAGGCGATGCCGGAACCGGCCGGGCAGGGGATGGACTACACGCCTCTGAAACCAGTGGTGGAGGCCTCTGCCCCCGCT
GACGTAAACGCCGCCTTCGCCGAGACCGGTATTGCGATCGTCTATGGTGACGAGTTTGCGGGCCTGCCGACGGCCAATGG
TGAAGTTTTCAGCCAGACGGAACTGACTGCGGCCCACCCCAGCCTGCCGCTGCCGAGCCTTGTGAGCGTTACCAATGTCG
ACACCGGGCGCGAAGTGGTTGTTCGGGTGAATGATCGCGGCCCGTTTGAGGATGGCGCCAATGTGCAGCTTTCCCGCAAG
GCGGCAGAAACGCTCGGCATGAACGGAGCAGGGAAGGGCAATGTGCGCCTTCGGTATCTGAGCCCCGCGCCTGTCGTTGC
CACCCGCCCTGCCGCGAAGACTTCCAGCGCGCCTGCTCTGCTGCGTGAGAGCCCCGTGGCTCAGCCGGCTGTTTCGCAAG
CCGTGTCGGCGCCGGTTGCTGCCGAGGACGAACTTCTTGGCGGCGGCGCCTCTGCGCCGCGCCTGATGTCGATGACGGTT
GCGCCTCCAGCACCGGCCTACACGGCCCCGGCGAGTGCGACCGGCGACGTTTTCGTTCAGCTCGCTTCCTTCTCCGACAT
CGGAAATGCCGAAGCCTTGCTTCGGAATGTGGAAGCCTCTCTCCCGGTCGAGATCGTTCCGGCGCGGGTGAATGGTGCTG
ACTTCTTCCGTGTGCGCGTTGGCCCCTTCCAGGACCATGCCGCAGCCGAGCAGATCCGTGCAAATCTCTCTTTGAACGGC
ACGGCGGACGGCCGGATCGTCACCGGATATTGA

Upstream 100 bases:

>100_bases
GGATTCCACCATCACGTGGTAAACACCAGTCTGAAAGCGGTAGAAAACCGCCCGGACCACCGAATGTGATCCGGTACTCA
GAATGAGGAGATTAGCGGTC

Downstream 100 bases:

>100_bases
GGAACCCTCAGCGCGCCCATTGACGCTGACCACAAACCGGCCCTTTTTCCTGCCTATACAGTGCAGAAGGCCGCTGAATA
TCCTGCGGCCACCTGAACGG

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MPFKRSTFVGRSRVALSVLAFACALSATAEAGSRGAPIVYKSDAMNGAAPSFQTAQAPARASAPAKSAPIDKATARIEFR
YPDSQPAVGQPVAGEFKTASAQSGPIAASTRESAYSEAPQMIAPAPPVVEAVSLQAMPEPAGQGMDYTPLKPVVEASAPA
DVNAAFAETGIAIVYGDEFAGLPTANGEVFSQTELTAAHPSLPLPSLVSVTNVDTGREVVVRVNDRGPFEDGANVQLSRK
AAETLGMNGAGKGNVRLRYLSPAPVVATRPAAKTSSAPALLRESPVAQPAVSQAVSAPVAAEDELLGGGASAPRLMSMTV
APPAPAYTAPASATGDVFVQLASFSDIGNAEALLRNVEASLPVEIVPARVNGADFFRVRVGPFQDHAAAEQIRANLSLNG
TADGRIVTGY

Sequences:

>Translated_410_residues
MPFKRSTFVGRSRVALSVLAFACALSATAEAGSRGAPIVYKSDAMNGAAPSFQTAQAPARASAPAKSAPIDKATARIEFR
YPDSQPAVGQPVAGEFKTASAQSGPIAASTRESAYSEAPQMIAPAPPVVEAVSLQAMPEPAGQGMDYTPLKPVVEASAPA
DVNAAFAETGIAIVYGDEFAGLPTANGEVFSQTELTAAHPSLPLPSLVSVTNVDTGREVVVRVNDRGPFEDGANVQLSRK
AAETLGMNGAGKGNVRLRYLSPAPVVATRPAAKTSSAPALLRESPVAQPAVSQAVSAPVAAEDELLGGGASAPRLMSMTV
APPAPAYTAPASATGDVFVQLASFSDIGNAEALLRNVEASLPVEIVPARVNGADFFRVRVGPFQDHAAAEQIRANLSLNG
TADGRIVTGY
>Mature_409_residues
PFKRSTFVGRSRVALSVLAFACALSATAEAGSRGAPIVYKSDAMNGAAPSFQTAQAPARASAPAKSAPIDKATARIEFRY
PDSQPAVGQPVAGEFKTASAQSGPIAASTRESAYSEAPQMIAPAPPVVEAVSLQAMPEPAGQGMDYTPLKPVVEASAPAD
VNAAFAETGIAIVYGDEFAGLPTANGEVFSQTELTAAHPSLPLPSLVSVTNVDTGREVVVRVNDRGPFEDGANVQLSRKA
AETLGMNGAGKGNVRLRYLSPAPVVATRPAAKTSSAPALLRESPVAQPAVSQAVSAPVAAEDELLGGGASAPRLMSMTVA
PPAPAYTAPASATGDVFVQLASFSDIGNAEALLRNVEASLPVEIVPARVNGADFFRVRVGPFQDHAAAEQIRANLSLNGT
ADGRIVTGY

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=290, Percent_Identity=30.3448275862069, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 41901; Mature: 41770

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFKRSTFVGRSRVALSVLAFACALSATAEAGSRGAPIVYKSDAMNGAAPSFQTAQAPAR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
ASAPAKSAPIDKATARIEFRYPDSQPAVGQPVAGEFKTASAQSGPIAASTRESAYSEAPQ
CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
MIAPAPPVVEAVSLQAMPEPAGQGMDYTPLKPVVEASAPADVNAAFAETGIAIVYGDEFA
CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHCCEEEEECCCCC
GLPTANGEVFSQTELTAAHPSLPLPSLVSVTNVDTGREVVVRVNDRGPFEDGANVQLSRK
CCCCCCCCEEECCEEEECCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCEEEHHH
AAETLGMNGAGKGNVRLRYLSPAPVVATRPAAKTSSAPALLRESPVAQPAVSQAVSAPVA
HHHHHCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCC
AEDELLGGGASAPRLMSMTVAPPAPAYTAPASATGDVFVQLASFSDIGNAEALLRNVEAS
CCHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCC
LPVEIVPARVNGADFFRVRVGPFQDHAAAEQIRANLSLNGTADGRIVTGY
CCEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHCEEECCCCCCEEEECC
>Mature Secondary Structure 
PFKRSTFVGRSRVALSVLAFACALSATAEAGSRGAPIVYKSDAMNGAAPSFQTAQAPAR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
ASAPAKSAPIDKATARIEFRYPDSQPAVGQPVAGEFKTASAQSGPIAASTRESAYSEAPQ
CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
MIAPAPPVVEAVSLQAMPEPAGQGMDYTPLKPVVEASAPADVNAAFAETGIAIVYGDEFA
CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHCCEEEEECCCCC
GLPTANGEVFSQTELTAAHPSLPLPSLVSVTNVDTGREVVVRVNDRGPFEDGANVQLSRK
CCCCCCCCEEECCEEEECCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCEEEHHH
AAETLGMNGAGKGNVRLRYLSPAPVVATRPAAKTSSAPALLRESPVAQPAVSQAVSAPVA
HHHHHCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCC
AEDELLGGGASAPRLMSMTVAPPAPAYTAPASATGDVFVQLASFSDIGNAEALLRNVEAS
CCHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCC
LPVEIVPARVNGADFFRVRVGPFQDHAAAEQIRANLSLNGTADGRIVTGY
CCEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHCEEECCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]