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The map label for this gene is gid

Identifier: 114797503

GI number: 114797503

Start: 2930509

End: 2931912

Strand: Direct

Name: gid

Synonym: HNE_2768

Alternate gene names: 114797503

Gene position: 2930509-2931912 (Clockwise)

Preceding gene: 114798706

Following gene: 114797440

Centisome position: 79.1

GC content: 62.39

Gene sequence:

>1404_bases
ATGACCCTGAAACCCATCCATGTAATCGGCGGCGGCATGGCCGGCTCCGAAGCGGCCTGGCAGATCGCCTCTGCGGGCGT
GCCCGTCATCCTGCACGAAATGCGCGGCGTGCGCGGCACAGACGCCCACCAGACCGACAAGCTGGCTGAGCTTGTCTGCT
CCAACTCGTTCCGCTCGGATGATCACACGACGAACGCCGTCGGCGTGATCCATGAGGAAATGCGCCGGGCGAACGGCCTG
ATCATCACCACCGCGAAAGACCATCAGGTACCCGCCGGCAGCGCGCTGGCCGTAGACCGGGAAGGTTTTTCCGAAGCGAT
CACGGCAAAGCTGGAAGCCCACCCGCTCGTCACCATCGTGCGCGAGGAAATCGCAGGCCTTCCGCCCGAAGACTGGGACA
GCGTGATCGTCGCGACGGGGCCGCTCACATCGATTGCGCTTGCCGAAGCCGTTCGCGCCCATACCGGCGAGACAGACCTT
GCCTTCTTCGATGCCATCGCGCCGATCGTCTATTTCGAGTCCATCGACATGGACAAAGCCTGGCGCCAGAGCCGCTATGA
CAAGGCGGGCCCTTCAGGTGATACGGCCGCTTACATCAACTGTCCGATGACGGAAGAGCAGTACAATGCCTTCCTCGATG
CGCTGCTCGCCGCGCCCAAGACAGAGTTCCGCGACTGGGAAAAGGACACGCCCTATTTCGAAGGCTGCCTACCCATCGAA
GTGATGGCAGAGCGCGGGCGCGAAACGCTGCGCTTTGGGCCAATGAAGCCGGTCGGCCTGACCAATCCACATAATCCCAC
GGTCAAGGCCCATGCCATCGTTCAGCTGCGCCAGGACAATGCGCTGGGCACATTGTGGAACATGGTCGGCTTCCAGACGA
AGCTGAAATATGCGGCGCAGACGGACATTTTTCGGATGATCCCCGGCCTGGAAAAGGCCGAGTTCGCGCGCCTCGGCGGC
ATCCACCGCAACACCTTCCTCAACTCGCCCAAACTGCTCGACCGGCAACTGCGGATGAAGTCGATGCCGCGCCTGCGTTT
TGCCGGTCAGGTGACGGGCGTCGAAGGCTATGTGGAGAGCGCGGCCATGGGCCTGCTCGCGGGCCGTTTTGCCGCCGCTG
AGCGCCTTGGCCAGAGGCTCGAGCCGCCTCCGCCAACCACGGCCATGGGCGCGCTGATCAGCCATATCACGGGCGGGCAC
CTCGCCGAAAAACAAACCTTCCAGCCGATGAACGTGAATTTCGGCCTCTTCCCGGATATTACCGATTATTCGAAGACGGA
CGAAAATGGCAAACGCCTGCGCGGCAAGGACAAGGGCCGGGCAAAAAAAATCGCCCAGGCCATCCGTGCGCTGCAGGACT
TTGACGCCTGGTTGGCAGGTGAAGCCGTGGTGGCTGCGGAGTAA

Upstream 100 bases:

>100_bases
ATATCGTCTCGTCTCATCTCGGGGCGCACACCTAAAGCCTCCCGCCCGGCCCGGCAAACGCTATCTTGACGCGCCGGGGC
AGCGGGCTCATGTCCGGCGC

Downstream 100 bases:

>100_bases
AACAGATGGCTGACACCTCCCTCTCCCCCGTTTTGCCGCTGTTTGCGAACACGCCGTCGAGCGTCAGCTTCAAGAAGCTG
CGCAAACGGCTGGTGCGCGG

Product: tRNA (uracil-5-)-methyltransferase Gid

Products: NA

Alternate protein names: Folate-dependent tRNA (uracil-5-)-methyltransferase; Folate-dependent tRNA(M-5-U54)-methyltransferase

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MTLKPIHVIGGGMAGSEAAWQIASAGVPVILHEMRGVRGTDAHQTDKLAELVCSNSFRSDDHTTNAVGVIHEEMRRANGL
IITTAKDHQVPAGSALAVDREGFSEAITAKLEAHPLVTIVREEIAGLPPEDWDSVIVATGPLTSIALAEAVRAHTGETDL
AFFDAIAPIVYFESIDMDKAWRQSRYDKAGPSGDTAAYINCPMTEEQYNAFLDALLAAPKTEFRDWEKDTPYFEGCLPIE
VMAERGRETLRFGPMKPVGLTNPHNPTVKAHAIVQLRQDNALGTLWNMVGFQTKLKYAAQTDIFRMIPGLEKAEFARLGG
IHRNTFLNSPKLLDRQLRMKSMPRLRFAGQVTGVEGYVESAAMGLLAGRFAAAERLGQRLEPPPPTTAMGALISHITGGH
LAEKQTFQPMNVNFGLFPDITDYSKTDENGKRLRGKDKGRAKKIAQAIRALQDFDAWLAGEAVVAAE

Sequences:

>Translated_467_residues
MTLKPIHVIGGGMAGSEAAWQIASAGVPVILHEMRGVRGTDAHQTDKLAELVCSNSFRSDDHTTNAVGVIHEEMRRANGL
IITTAKDHQVPAGSALAVDREGFSEAITAKLEAHPLVTIVREEIAGLPPEDWDSVIVATGPLTSIALAEAVRAHTGETDL
AFFDAIAPIVYFESIDMDKAWRQSRYDKAGPSGDTAAYINCPMTEEQYNAFLDALLAAPKTEFRDWEKDTPYFEGCLPIE
VMAERGRETLRFGPMKPVGLTNPHNPTVKAHAIVQLRQDNALGTLWNMVGFQTKLKYAAQTDIFRMIPGLEKAEFARLGG
IHRNTFLNSPKLLDRQLRMKSMPRLRFAGQVTGVEGYVESAAMGLLAGRFAAAERLGQRLEPPPPTTAMGALISHITGGH
LAEKQTFQPMNVNFGLFPDITDYSKTDENGKRLRGKDKGRAKKIAQAIRALQDFDAWLAGEAVVAAE
>Mature_466_residues
TLKPIHVIGGGMAGSEAAWQIASAGVPVILHEMRGVRGTDAHQTDKLAELVCSNSFRSDDHTTNAVGVIHEEMRRANGLI
ITTAKDHQVPAGSALAVDREGFSEAITAKLEAHPLVTIVREEIAGLPPEDWDSVIVATGPLTSIALAEAVRAHTGETDLA
FFDAIAPIVYFESIDMDKAWRQSRYDKAGPSGDTAAYINCPMTEEQYNAFLDALLAAPKTEFRDWEKDTPYFEGCLPIEV
MAERGRETLRFGPMKPVGLTNPHNPTVKAHAIVQLRQDNALGTLWNMVGFQTKLKYAAQTDIFRMIPGLEKAEFARLGGI
HRNTFLNSPKLLDRQLRMKSMPRLRFAGQVTGVEGYVESAAMGLLAGRFAAAERLGQRLEPPPPTTAMGALISHITGGHL
AEKQTFQPMNVNFGLFPDITDYSKTDENGKRLRGKDKGRAKKIAQAIRALQDFDAWLAGEAVVAAE

Specific function: Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs

COG id: COG1206

COG function: function code J; NAD(FAD)-utilizing enzyme possibly involved in translation

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MnmG family. TrmFO subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRMFO_HYPNA (Q0BYJ6)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_761447.1
- ProteinModelPortal:   Q0BYJ6
- SMR:   Q0BYJ6
- STRING:   Q0BYJ6
- GeneID:   4287632
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_2768
- NMPDR:   fig|228405.5.peg.2654
- TIGR:   HNE_2768
- eggNOG:   COG1206
- HOGENOM:   HBG285041
- OMA:   FEGCLPI
- ProtClustDB:   PRK05335
- BioCyc:   HNEP81032:HNE_2768-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01037
- InterPro:   IPR004417
- InterPro:   IPR002218
- InterPro:   IPR020595
- TIGRFAMs:   TIGR00137

Pfam domain/function: PF01134 GIDA

EC number: =2.1.1.74

Molecular weight: Translated: 50981; Mature: 50850

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: PS01280 GIDA_1; PS01281 GIDA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLKPIHVIGGGMAGSEAAWQIASAGVPVILHEMRGVRGTDAHQTDKLAELVCSNSFRSD
CCCCCEEEECCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
DHTTNAVGVIHEEMRRANGLIITTAKDHQVPAGSALAVDREGFSEAITAKLEAHPLVTIV
CCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEECHHCHHHHHHHHHCCCHHHHHH
REEIAGLPPEDWDSVIVATGPLTSIALAEAVRAHTGETDLAFFDAIAPIVYFESIDMDKA
HHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHH
WRQSRYDKAGPSGDTAAYINCPMTEEQYNAFLDALLAAPKTEFRDWEKDTPYFEGCLPIE
HHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCHHCCCCHHH
VMAERGRETLRFGPMKPVGLTNPHNPTVKAHAIVQLRQDNALGTLWNMVGFQTKLKYAAQ
HHHHCCCHHEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
TDIFRMIPGLEKAEFARLGGIHRNTFLNSPKLLDRQLRMKSMPRLRFAGQVTGVEGYVES
HHHHHHCCCCCHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCEEECCEECCHHHHHHH
AAMGLLAGRFAAAERLGQRLEPPPPTTAMGALISHITGGHLAEKQTFQPMNVNFGLFPDI
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCC
TDYSKTDENGKRLRGKDKGRAKKIAQAIRALQDFDAWLAGEAVVAAE
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure 
TLKPIHVIGGGMAGSEAAWQIASAGVPVILHEMRGVRGTDAHQTDKLAELVCSNSFRSD
CCCCEEEECCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
DHTTNAVGVIHEEMRRANGLIITTAKDHQVPAGSALAVDREGFSEAITAKLEAHPLVTIV
CCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEECHHCHHHHHHHHHCCCHHHHHH
REEIAGLPPEDWDSVIVATGPLTSIALAEAVRAHTGETDLAFFDAIAPIVYFESIDMDKA
HHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHH
WRQSRYDKAGPSGDTAAYINCPMTEEQYNAFLDALLAAPKTEFRDWEKDTPYFEGCLPIE
HHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCHHCCCCHHH
VMAERGRETLRFGPMKPVGLTNPHNPTVKAHAIVQLRQDNALGTLWNMVGFQTKLKYAAQ
HHHHCCCHHEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
TDIFRMIPGLEKAEFARLGGIHRNTFLNSPKLLDRQLRMKSMPRLRFAGQVTGVEGYVES
HHHHHHCCCCCHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCEEECCEECCHHHHHHH
AAMGLLAGRFAAAERLGQRLEPPPPTTAMGALISHITGGHLAEKQTFQPMNVNFGLFPDI
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCC
TDYSKTDENGKRLRGKDKGRAKKIAQAIRALQDFDAWLAGEAVVAAE
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA